DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G09730 |
| fragaria_vesca | FvH4_2g12870 FvH4_2g12870 FvH4_2g12870 FvH4_2g12870 |
| malus_domestica | MD05G1035500.v1.1 MD10G1037800.v1.1 |
| prunus_persica | Prupe.8G043300_v2.0.a1 |
| pyrus_communis | pycom05g02600 pycom10g02570 |
| rosa_chinensis | RchiOBHm_Chr6g0273971 |
| rosa_laevigata | RLG00000013588 |
| rosa_multiflora | Rmu_sc0000045.1_g000081 Rmu_sc0013374.1_g000007 |
| rosa_roxburghii | Rroxscaffold_7G00194840 |
| rosa_rugosa | Rorug06G0077900 |
| rosa_samantha | Rh6AG193500 Rh6BG197100 Rh6CG197000 Rh6DG188900 |
| rosa_wichuraiana | Rw6G016870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1022 |
| Acc36I | ACCTGC | 2 cut(s) | 631, 1611 |
| AccB1I | GGYRCC | 2 cut(s) | 252, 1240 |
| AccBSI | CCGCTC | 1 cut(s) | 605 |
| AccI | GTMKAC | 2 cut(s) | 689, 1350 |
| AccIII | TCCGGA | 1 cut(s) | 1542 |
| AciI | CCGC | 5 cut(s) | 147, 404, 605, 702, 974 |
| AclWI | GGATC | 1 cut(s) | 1197 |
| AcsI | RAATTY | 3 cut(s) | 367, 441, 1643 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AcyI | GRCGYC | 2 cut(s) | 595, 1898 |
| AfaI | GTAC | 1 cut(s) | 1405 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 625, 774, 775, 1186, 1237, 1580, 1781 |
| AflIII | ACRYGT | 1 cut(s) | 528 |
| AgsI | TTSAA | 9 cut(s) | 188, 217, 581, 739, 752, 785, 1004, 1262, 1381 |
| AjnI | CCWGG | 4 cut(s) | 590, 723, 769, 1320 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1457, 1489, 1571, 1603 |
| Alw26I | GTCTC | 5 cut(s) | 238, 304, 712, 958, 1603 |
| AlwI | GGATC | 1 cut(s) | 1197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1631 |
| Ama87I | CYCGRG | 2 cut(s) | 600, 1732 |
| Aor13HI | TCCGGA | 1 cut(s) | 1542 |
| AoxI | GGCC | 3 cut(s) | 134, 299, 522 |
| ApeKI | GCWGC | 3 cut(s) | 74, 1325, 1728 |
| ApoI | RAATTY | 3 cut(s) | 367, 441, 1643 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 839, 871 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1711, 1741 |
| AspLEI | GCGC | 2 cut(s) | 287, 1023 |
| AspS9I | GGNCC | 4 cut(s) | 18, 299, 765, 872 |
| AsuC2I | CCSGG | 2 cut(s) | 115, 505 |
| AsuHPI | GGTGA | 2 cut(s) | 827, 1247 |
| AsuII | TTCGAA | 1 cut(s) | 1835 |
| AvaI | CYCGRG | 2 cut(s) | 600, 1732 |
| AvaII | GGWCC | 3 cut(s) | 18, 765, 872 |
| BanI | GGYRCC | 2 cut(s) | 252, 1240 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1092, 1124 |
| BbvI | GCAGC | 3 cut(s) | 86, 1312, 1740 |
| BccI | CCATC | 6 cut(s) | 317, 412, 791, 920, 1144, 1283 |
| BceAI | ACGGC | 1 cut(s) | 1164 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 629, 663, 1656, 1690, 1713, 1747 |
| BciT130I | CCWGG | 4 cut(s) | 592, 725, 771, 1322 |
| BcnI | CCSGG | 2 cut(s) | 115, 505 |
| BcoDI | GTCTC | 5 cut(s) | 238, 304, 712, 958, 1603 |
| BfuAI | ACCTGC | 2 cut(s) | 631, 1611 |
| BglII | AGATCT | 1 cut(s) | 1212 |
| BisI | GCNGC | 4 cut(s) | 75, 405, 1326, 1729 |
| BlsI | GCNGC | 4 cut(s) | 76, 406, 1327, 1730 |
| Bme1390I | CCNGG | 6 cut(s) | 115, 505, 592, 725, 771, 1322 |
| Bme18I | GGWCC | 3 cut(s) | 18, 765, 872 |
| BmeT110I | CYCGRG | 2 cut(s) | 600, 1732 |
| BmgT120I | GGNCC | 4 cut(s) | 18, 299, 765, 872 |
| BmiI | GGNNCC | 8 cut(s) | 20, 254, 432, 766, 767, 938, 1084, 1242 |
| BmrFI | CCNGG | 6 cut(s) | 115, 505, 592, 725, 771, 1322 |
| BmsI | GCATC | 5 cut(s) | 923, 1058, 1637, 1664, 1676 |
| Bpu14I | TTCGAA | 1 cut(s) | 1835 |
| BpuEI | CTTGAG | 4 cut(s) | 254, 1139, 1687, 1747 |
| BpuMI | CCSGG | 2 cut(s) | 115, 505 |
| BsaHI | GRCGYC | 2 cut(s) | 595, 1898 |
| BsaI | GGTCTC | 2 cut(s) | 712, 958 |
| BsaJI | CCNNGG | 5 cut(s) | 114, 590, 723, 769, 1231 |
| BsaWI | WCCGGW | 1 cut(s) | 1542 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 625, 774, 775, 1186, 1237, 1580, 1781 |
| Bse1I | ACTGG | 5 cut(s) | 1341, 1411, 1719, 1749, 1779 |
| Bse3DI | GCAATG | 2 cut(s) | 224, 1551 |
| BseAI | TCCGGA | 1 cut(s) | 1542 |
| BseBI | CCWGG | 4 cut(s) | 592, 725, 771, 1322 |
| BseDI | CCNNGG | 5 cut(s) | 114, 590, 723, 769, 1231 |
| BseGI | GGATG | 5 cut(s) | 328, 802, 844, 1025, 1351 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 625, 774, 775, 1186, 1237, 1580, 1781 |
| BseMI | GCAATG | 2 cut(s) | 224, 1551 |
| BseMII | CTCAG | 5 cut(s) | 233, 262, 381, 627, 1540 |
| BseNI | ACTGG | 5 cut(s) | 1341, 1411, 1719, 1749, 1779 |
| BseRI | GAGGAG | 5 cut(s) | 21, 31, 41, 1010, 1505 |
| BseXI | GCAGC | 3 cut(s) | 86, 1312, 1740 |
| BseYI | CCCAGC | 3 cut(s) | 70, 460, 543 |
| BsgI | GTGCAG | 1 cut(s) | 1297 |
| BshFI | GGCC | 3 cut(s) | 136, 301, 524 |
| BshNI | GGYRCC | 2 cut(s) | 252, 1240 |
| BsiHKCI | CYCGRG | 2 cut(s) | 600, 1732 |
| BsiSI | CCGG | 3 cut(s) | 114, 504, 1543 |
| BslFI | GGGAC | 6 cut(s) | 572, 778, 881, 1347, 1562, 1875 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 625, 774, 775, 1186, 1237, 1580, 1781 |
| BsmAI | GTCTC | 5 cut(s) | 238, 304, 712, 958, 1603 |
| BsmFI | GGGAC | 6 cut(s) | 572, 778, 881, 1347, 1562, 1875 |
| BsnI | GGCC | 3 cut(s) | 136, 301, 524 |
| Bso31I | GGTCTC | 2 cut(s) | 712, 958 |
| BsoBI | CYCGRG | 2 cut(s) | 600, 1732 |
| Bsp119I | TTCGAA | 1 cut(s) | 1835 |
| Bsp13I | TCCGGA | 1 cut(s) | 1542 |
| Bsp143I | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| Bsp19I | CCATGG | 1 cut(s) | 1231 |
| BspACI | CCGC | 5 cut(s) | 147, 404, 605, 702, 974 |
| BspANI | GGCC | 3 cut(s) | 136, 301, 524 |
| BspCNI | CTCAG | 5 cut(s) | 234, 261, 382, 628, 1539 |
| BspEI | TCCGGA | 1 cut(s) | 1542 |
| BspLI | GGNNCC | 8 cut(s) | 20, 254, 432, 766, 767, 938, 1084, 1242 |
| BspMI | ACCTGC | 2 cut(s) | 631, 1611 |
| BspPI | GGATC | 1 cut(s) | 1197 |
| BspT104I | TTCGAA | 1 cut(s) | 1835 |
| BspT107I | GGYRCC | 2 cut(s) | 252, 1240 |
| BspTNI | GGTCTC | 2 cut(s) | 712, 958 |
| BsrBI | CCGCTC | 1 cut(s) | 605 |
| BsrDI | GCAATG | 2 cut(s) | 224, 1551 |
| BsrI | ACTGG | 5 cut(s) | 1341, 1411, 1719, 1749, 1779 |
| BssECI | CCNNGG | 5 cut(s) | 114, 590, 723, 769, 1231 |
| BssMI | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| BssNI | GRCGYC | 2 cut(s) | 595, 1898 |
| BssT1I | CCWWGG | 1 cut(s) | 1231 |
| Bst2UI | CCWGG | 4 cut(s) | 592, 725, 771, 1322 |
| Bst4CI | ACNGT | 3 cut(s) | 484, 946, 1222 |
| Bst6I | CTCTTC | 2 cut(s) | 347, 1781 |
| BstACI | GRCGYC | 2 cut(s) | 595, 1898 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 226 |
| BstBI | TTCGAA | 1 cut(s) | 1835 |
| BstC8I | GCNNGC | 4 cut(s) | 303, 1245, 1696, 1726 |
| BstDEI | CTNAG | 6 cut(s) | 242, 248, 390, 636, 1516, 1526 |
| BstDSI | CCRYGG | 1 cut(s) | 1231 |
| BstF5I | GGATG | 5 cut(s) | 328, 802, 844, 1025, 1351 |
| BstHHI | GCGC | 2 cut(s) | 287, 1023 |
| BstKTI | GATC | 4 cut(s) | 862, 1192, 1215, 1811 |
| BstMAI | GTCTC | 5 cut(s) | 238, 304, 712, 958, 1603 |
| BstMBI | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 226, 637 |
| BstNI | CCWGG | 4 cut(s) | 592, 725, 771, 1322 |
| BstNSI | RCATGY | 1 cut(s) | 532 |
| BstSCI | CCNGG | 6 cut(s) | 113, 503, 590, 723, 769, 1320 |
| BstV1I | GCAGC | 3 cut(s) | 86, 1312, 1740 |
| BstX2I | RGATCY | 1 cut(s) | 1212 |
| BstYI | RGATCY | 1 cut(s) | 1212 |
| BsuRI | GGCC | 3 cut(s) | 136, 301, 524 |
| BtgI | CCRYGG | 1 cut(s) | 1231 |
| BtsCI | GGATG | 5 cut(s) | 328, 802, 844, 1025, 1351 |
| BtsI | GCAGTG | 1 cut(s) | 1031 |
| BtsIMutI | CAGTG | 7 cut(s) | 452, 1031, 1534, 1574, 1726, 1786, 1899 |
| BveI | ACCTGC | 2 cut(s) | 631, 1611 |
| Cac8I | GCNNGC | 4 cut(s) | 303, 1245, 1696, 1726 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1631 |
| CfoI | GCGC | 2 cut(s) | 287, 1023 |
| Cfr13I | GGNCC | 4 cut(s) | 18, 299, 765, 872 |
| CseI | GACGC | 2 cut(s) | 584, 1887 |
| Csp6I | GTAC | 1 cut(s) | 1404 |
| CviAII | CATG | 5 cut(s) | 529, 674, 853, 1232, 1363 |
| CviQI | GTAC | 1 cut(s) | 1404 |
| DdeI | CTNAG | 6 cut(s) | 242, 248, 390, 636, 1516, 1526 |
| DpnI | GATC | 4 cut(s) | 861, 1191, 1214, 1810 |
| DpnII | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| Eam1104I | CTCTTC | 2 cut(s) | 347, 1781 |
| EarI | CTCTTC | 2 cut(s) | 347, 1781 |
| Eco130I | CCWWGG | 1 cut(s) | 1231 |
| Eco147I | AGGCCT | 1 cut(s) | 136 |
| Eco31I | GGTCTC | 2 cut(s) | 712, 958 |
| Eco47I | GGWCC | 3 cut(s) | 18, 765, 872 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| Eco88I | CYCGRG | 2 cut(s) | 600, 1732 |
| EcoO109I | RGGNCCY | 2 cut(s) | 18, 765 |
| EcoRII | CCWGG | 4 cut(s) | 590, 723, 769, 1320 |
| EcoT14I | CCWWGG | 1 cut(s) | 1231 |
| ErhI | CCWWGG | 1 cut(s) | 1231 |
| FaeI | CATG | 5 cut(s) | 532, 677, 856, 1235, 1366 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1696, 1728 |
| FaqI | GGGAC | 6 cut(s) | 572, 778, 881, 1347, 1562, 1875 |
| FatI | CATG | 5 cut(s) | 528, 673, 852, 1231, 1362 |
| FblI | GTMKAC | 2 cut(s) | 689, 1350 |
| Fnu4HI | GCNGC | 4 cut(s) | 75, 405, 1326, 1729 |
| FokI | GGATG | 5 cut(s) | 335, 809, 851, 1012, 1358 |
| Fsp4HI | GCNGC | 4 cut(s) | 75, 405, 1326, 1729 |
| FspI | TGCGCA | 1 cut(s) | 1022 |
| GlaI | GCGC | 2 cut(s) | 286, 1022 |
| GluI | GCNGC | 4 cut(s) | 75, 405, 1326, 1729 |
| GsaI | CCCAGC | 3 cut(s) | 74, 464, 547 |
| HaeIII | GGCC | 3 cut(s) | 136, 301, 524 |
| HapII | CCGG | 3 cut(s) | 114, 504, 1543 |
| HgaI | GACGC | 2 cut(s) | 584, 1887 |
| HhaI | GCGC | 2 cut(s) | 287, 1023 |
| Hin1I | GRCGYC | 2 cut(s) | 595, 1898 |
| Hin1II | CATG | 5 cut(s) | 532, 677, 856, 1235, 1366 |
| Hin6I | GCGC | 2 cut(s) | 285, 1021 |
| HinP1I | GCGC | 2 cut(s) | 285, 1021 |
| HindIII | AAGCTT | 3 cut(s) | 1073, 1513, 1710 |
| HpaII | CCGG | 3 cut(s) | 114, 504, 1543 |
| HphI | GGTGA | 2 cut(s) | 827, 1247 |
| Hpy166II | GTNNAC | 2 cut(s) | 690, 1351 |
| Hpy188I | TCNGA | 7 cut(s) | 387, 637, 1087, 1212, 1608, 1649, 1879 |
| Hpy8I | GTNNAC | 2 cut(s) | 690, 1351 |
| HpyAV | CCTTC | 6 cut(s) | 32, 467, 549, 1406, 1695, 1785 |
| HpyCH4III | ACNGT | 3 cut(s) | 484, 946, 1222 |
| HpyCH4IV | ACGT | 1 cut(s) | 1356 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 226, 637 |
| HpyF3I | CTNAG | 6 cut(s) | 242, 248, 390, 636, 1516, 1526 |
| HpySE526I | ACGT | 1 cut(s) | 1356 |
| Hsp92I | GRCGYC | 2 cut(s) | 595, 1898 |
| Hsp92II | CATG | 5 cut(s) | 532, 677, 856, 1235, 1366 |
| HspAI | GCGC | 2 cut(s) | 285, 1021 |
| KflI | GGGWCCC | 1 cut(s) | 765 |
| Kpn2I | TCCGGA | 1 cut(s) | 1542 |
| Kzo9I | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| LmnI | GCTCC | 5 cut(s) | 436, 628, 1576, 1639, 1777 |
| Lsp1109I | GCAGC | 3 cut(s) | 86, 1312, 1740 |
| LweI | GCATC | 5 cut(s) | 923, 1058, 1637, 1664, 1676 |
| MaeII | ACGT | 1 cut(s) | 1356 |
| MaeIII | GTNAC | 5 cut(s) | 815, 1107, 1160, 1283, 1441 |
| MalI | GATC | 4 cut(s) | 861, 1191, 1214, 1810 |
| MbiI | CCGCTC | 1 cut(s) | 605 |
| MboI | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| MfeI | CAATTG | 1 cut(s) | 747 |
| MflI | RGATCY | 1 cut(s) | 1212 |
| MluCI | AATT | 7 cut(s) | 367, 441, 747, 1225, 1485, 1566, 1643 |
| MlyI | GAGTC | 3 cut(s) | 240, 511, 1605 |
| MmeI | TCCRAC | 1 cut(s) | 816 |
| MroI | TCCGGA | 1 cut(s) | 1542 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1711, 1741 |
| MseI | TTAA | 7 cut(s) | 122, 902, 1071, 1169, 1278, 1821, 1841 |
| MspA1I | CMGCKG | 3 cut(s) | 464, 547, 1905 |
| MspI | CCGG | 3 cut(s) | 114, 504, 1543 |
| MspR9I | CCNGG | 6 cut(s) | 115, 505, 592, 725, 771, 1322 |
| MunI | CAATTG | 1 cut(s) | 747 |
| MvaI | CCWGG | 4 cut(s) | 592, 725, 771, 1322 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 226, 637 |
| NciI | CCSGG | 2 cut(s) | 115, 505 |
| NcoI | CCATGG | 1 cut(s) | 1231 |
| NdeII | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| NlaIII | CATG | 5 cut(s) | 532, 677, 856, 1235, 1366 |
| NlaIV | GGNNCC | 8 cut(s) | 20, 254, 432, 766, 767, 938, 1084, 1242 |
| NmuCI | GTSAC | 3 cut(s) | 815, 1283, 1441 |
| NsbI | TGCGCA | 1 cut(s) | 1022 |
| NspI | RCATGY | 1 cut(s) | 532 |
| NspV | TTCGAA | 1 cut(s) | 1835 |
| PaeR7I | CTCGAG | 2 cut(s) | 600, 1732 |
| PceI | AGGCCT | 1 cut(s) | 136 |
| PciI | ACATGT | 1 cut(s) | 528 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1711, 1741 |
| PfeI | GAWTC | 8 cut(s) | 456, 577, 681, 731, 1465, 1480, 1520, 1889 |
| PkrI | GCNGC | 4 cut(s) | 76, 406, 1327, 1730 |
| PleI | GAGTC | 3 cut(s) | 240, 511, 1604 |
| PpsI | GAGTC | 3 cut(s) | 240, 511, 1604 |
| PpuMI | RGGWCCY | 2 cut(s) | 18, 765 |
| PscI | ACATGT | 1 cut(s) | 528 |
| Psp5II | RGGWCCY | 2 cut(s) | 18, 765 |
| Psp6I | CCWGG | 4 cut(s) | 590, 723, 769, 1320 |
| PspFI | CCCAGC | 3 cut(s) | 70, 460, 543 |
| PspGI | CCWGG | 4 cut(s) | 590, 723, 769, 1320 |
| PspN4I | GGNNCC | 8 cut(s) | 20, 254, 432, 766, 767, 938, 1084, 1242 |
| PspPI | GGNCC | 4 cut(s) | 18, 299, 765, 872 |
| PspPPI | RGGWCCY | 2 cut(s) | 18, 765 |
| PspXI | VCTCGAGB | 1 cut(s) | 600 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1631 |
| PsuI | RGATCY | 1 cut(s) | 1212 |
| PvuII | CAGCTG | 3 cut(s) | 464, 547, 1905 |
| RsaI | GTAC | 1 cut(s) | 1405 |
| RsaNI | GTAC | 1 cut(s) | 1404 |
| SaqAI | TTAA | 7 cut(s) | 122, 902, 1071, 1169, 1278, 1821, 1841 |
| SatI | GCNGC | 4 cut(s) | 75, 405, 1326, 1729 |
| Sau3AI | GATC | 4 cut(s) | 859, 1189, 1212, 1808 |
| Sau96I | GGNCC | 4 cut(s) | 18, 299, 765, 872 |
| SchI | GAGTC | 3 cut(s) | 240, 511, 1605 |
| ScrFI | CCNGG | 6 cut(s) | 115, 505, 592, 725, 771, 1322 |
| SfaNI | GCATC | 5 cut(s) | 923, 1058, 1637, 1664, 1676 |
| Sfr274I | CTCGAG | 2 cut(s) | 600, 1732 |
| SfuI | TTCGAA | 1 cut(s) | 1835 |
| SinI | GGWCC | 3 cut(s) | 18, 765, 872 |
| SlaI | CTCGAG | 2 cut(s) | 600, 1732 |
| SmlI | CTYRAG | 6 cut(s) | 233, 600, 1118, 1702, 1732, 1762 |
| SmoI | CTYRAG | 6 cut(s) | 233, 600, 1118, 1702, 1732, 1762 |
| Sse9I | AATT | 7 cut(s) | 367, 441, 747, 1225, 1485, 1566, 1643 |
| SseBI | AGGCCT | 1 cut(s) | 136 |
| SsiI | CCGC | 5 cut(s) | 147, 404, 605, 702, 974 |
| SspI | AATATT | 1 cut(s) | 1011 |
| StuI | AGGCCT | 1 cut(s) | 136 |
| StyD4I | CCNGG | 6 cut(s) | 113, 503, 590, 723, 769, 1320 |
| StyI | CCWWGG | 1 cut(s) | 1231 |
| TaaI | ACNGT | 3 cut(s) | 484, 946, 1222 |
| TaiI | ACGT | 1 cut(s) | 1359 |
| TaqI | TCGA | 7 cut(s) | 601, 1057, 1217, 1483, 1733, 1811, 1835 |
| TasI | AATT | 7 cut(s) | 367, 441, 747, 1225, 1485, 1566, 1643 |
| TauI | GCSGC | 1 cut(s) | 407 |
| TfiI | GAWTC | 8 cut(s) | 456, 577, 681, 731, 1465, 1480, 1520, 1889 |
| Tru1I | TTAA | 7 cut(s) | 122, 902, 1071, 1169, 1278, 1821, 1841 |
| Tru9I | TTAA | 7 cut(s) | 122, 902, 1071, 1169, 1278, 1821, 1841 |
| TscAI | CASTG | 7 cut(s) | 452, 1038, 1534, 1581, 1726, 1786, 1899 |
| TseFI | GTSAC | 3 cut(s) | 815, 1283, 1441 |
| TseI | GCWGC | 3 cut(s) | 74, 1325, 1728 |
| Tsp45I | GTSAC | 3 cut(s) | 815, 1283, 1441 |
| TspDTI | ATGAA | 6 cut(s) | 599, 723, 1057, 1218, 1388, 1524 |
| TspRI | CASTG | 7 cut(s) | 452, 1038, 1534, 1581, 1726, 1786, 1899 |
| VpaK11BI | GGWCC | 3 cut(s) | 18, 765, 872 |
| XapI | RAATTY | 3 cut(s) | 367, 441, 1643 |
| XceI | RCATGY | 1 cut(s) | 532 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1183 |
| XhoI | CTCGAG | 2 cut(s) | 600, 1732 |
| XmiI | GTMKAC | 2 cut(s) | 689, 1350 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1711, 1741 |