Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010005

Physical Location & Seq

Genomic Coordinates Reverse (-)

2933311 .. 2936605

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02570.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGAATTGAGGTTCCCACTGAAATTCAGAGCATTGGGATTCCGGCGGTGTTGGAAGGGAAGACTGTGGTCTTGGGTTCTCACACTGGCTCTGGCAAGACTCTGGCTTACATGTTGCCTCTTGCCCAGCTGTTGAGAAAGGATGAGGCTGAAGGTGGTATTCAAATGAAGCCCAGGCGTCCTAGAGCTGTTGTGCTATGCCCCACAAAGGAGTTGTCTGAGCAGGTTTTTCGTGTTTCCAAGTTTGTCAGCCATCATGCAAGATTCAGGTCTACTACGGTAAGTGGCGGTGGTCGGTTGAGACCCCAGGAGGATTCATTGAATAACCCAATTGAAATGGTAGTTGGTACCCCTGGCAGGGTTCTCCAACATATTGAGGATGGCAACTTGGTTTACGGTGACATCAAATATGTGGTATTGGATGAGGCAGATACCATGTTTGATCGTGGCTTTGGTCCAGACATTCGCAAGTTTCTTGTCCCATTAAAACATCGTGCATTGAAACCCGGAGGGCAAGGGTTGCAAGGGTTCCAAACTGTTTTGGTCTCAGCAACAATGACAAAGGCAGTGCAAAACCTGATTGATGAGGAGTTCCAAGGAATATTACACTTGCGCACATCCTCACTGCATAAAAAGATTGCATCTGCACGTCATGATTTCGTTAAAATTTCAGGTGCTGAGAACAAGCTGGAATCACTTCTACAGGTTCTGGAGCCAGGTTTAGCAAAGGGAAATGGAATAATGGTGTTCTGTTACACATTAAGTTCCAGCTGTGCTGTGGATCACTTTCTCAATGAAAACCAGATCTCTACCGTCAATTATCATGGTGAGGTGCCAGCAGAACAAAGGGTTGAAAACCTCAAAAAGTTTAAGAGCAACGATGGAGATTGCCCTACATTGGTATGCACAGACCTGGCTGCAAGGGGACTGGACTTGGATGTAGACCATGTTATAATGTTTGATTTTCCTTTGAACTCTGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0010501 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019843 GO:0022607 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070035 GO:0070180 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0110102 GO:0140098 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

329

Amino Acids

35.98

Weight (kDa)

6.6

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09730
fragaria_vesca	FvH4_2g12870 FvH4_2g12870 FvH4_2g12870 FvH4_2g12870
malus_domestica	MD05G1035500.v1.1 MD10G1037800.v1.1
prunus_persica	Prupe.8G043300_v2.0.a1
pyrus_communis	pycom05g02600 pycom10g02570
rosa_chinensis	RchiOBHm_Chr6g0273971
rosa_laevigata	RLG00000013588
rosa_multiflora	Rmu_sc0000045.1_g000081 Rmu_sc0013374.1_g000007
rosa_roxburghii	Rroxscaffold_7G00194840
rosa_rugosa	Rorug06G0077900
rosa_samantha	Rh6AG193500 Rh6BG197100 Rh6CG197000 Rh6DG188900
rosa_wichuraiana	Rw6G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
Acc16I	TGCGCA	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	214
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	347, 832
AccI	GTMKAC	2 cut(s)	272, 942
AciI	CCGC	2 cut(s)	47, 288
AclWI	GGATC	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	24, 666
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	208, 357, 358, 898
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	6 cut(s)	164, 322, 335, 502, 854, 973
AjiI	CACGTC	1 cut(s)	650
AjnI	CCWGG	5 cut(s)	173, 306, 352, 715, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	130, 188, 688, 771
AluI	AGCT	4 cut(s)	130, 188, 688, 771
Alw26I	GTCTC	2 cut(s)	295, 550
AlwI	GGATC	1 cut(s)	789
AlwNI	CAGNNNCTG	2 cut(s)	677, 709
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	2 cut(s)	24, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	1 cut(s)	696
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	2 cut(s)	410, 839
AvaII	GGWCC	1 cut(s)	455
BanI	GGYRCC	2 cut(s)	347, 832
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	3 cut(s)	261, 374, 875
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	5 cut(s)	175, 308, 354, 717, 914
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	295, 550
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	6 cut(s)	175, 308, 354, 507, 717, 914
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	5 cut(s)	15, 349, 530, 714, 834
BmrFI	CCNGG	6 cut(s)	175, 308, 354, 507, 717, 914
BmsI	GCATC	1 cut(s)	650
BoxI	GACNNNNGTC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	295, 550
BsaJI	CCNNGG	4 cut(s)	173, 306, 352, 595
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 357, 358, 898
Bse1I	ACTGG	2 cut(s)	91, 933
BseBI	CCWGG	5 cut(s)	175, 308, 354, 717, 914
BseDI	CCNNGG	4 cut(s)	173, 306, 352, 595
BseGI	GGATG	5 cut(s)	148, 385, 427, 617, 943
BseLI	CCNNNNNNNGG	4 cut(s)	208, 357, 358, 898
BseMII	CTCAG	3 cut(s)	210, 561, 669
BseNI	ACTGG	2 cut(s)	91, 933
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	904
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	630
BshNI	GGYRCC	2 cut(s)	347, 832
BsiSI	CCGG	2 cut(s)	44, 507
BslFI	GGGAC	2 cut(s)	464, 939
BslI	CCNNNNNNNGG	4 cut(s)	208, 357, 358, 898
BsmAI	GTCTC	2 cut(s)	295, 550
BsmFI	GGGAC	2 cut(s)	464, 939
Bso31I	GGTCTC	2 cut(s)	295, 550
Bsp143I	GATC	3 cut(s)	442, 781, 804
BspACI	CCGC	2 cut(s)	47, 288
BspCNI	CTCAG	3 cut(s)	211, 560, 670
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	5 cut(s)	15, 349, 530, 714, 834
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	789
BspT107I	GGYRCC	2 cut(s)	347, 832
BspTNI	GGTCTC	2 cut(s)	295, 550
BsrI	ACTGG	2 cut(s)	91, 933
BssECI	CCNNGG	4 cut(s)	173, 306, 352, 595
BssMI	GATC	3 cut(s)	442, 781, 804
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	5 cut(s)	175, 308, 354, 717, 914
Bst4CI	ACNGT	5 cut(s)	67, 280, 398, 538, 814
BstACI	GRCGYC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	3 cut(s)	219, 547, 678
BstF5I	GGATG	5 cut(s)	148, 385, 427, 617, 943
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	3 cut(s)	445, 784, 807
BstMAI	GTCTC	2 cut(s)	295, 550
BstMBI	GATC	3 cut(s)	442, 781, 804
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNI	CCWGG	5 cut(s)	175, 308, 354, 717, 914
BstNSI	RCATGY	1 cut(s)	115
BstPAI	GACNNNNGTC	1 cut(s)	68
BstSCI	CCNGG	6 cut(s)	173, 306, 352, 505, 715, 912
BstSFI	CTRYAG	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	650
BtsCI	GGATG	5 cut(s)	148, 385, 427, 617, 943
BtsI	GCAGTG	2 cut(s)	573, 623
BtsIMutI	CAGTG	4 cut(s)	18, 84, 573, 623
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	837
CaiI	CAGNNNCTG	2 cut(s)	677, 709
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	6 cut(s)	112, 257, 436, 653, 824, 947
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	219, 547, 678
DpnI	GATC	3 cut(s)	444, 783, 806
DpnII	GATC	3 cut(s)	442, 781, 804
Eco130I	CCWWGG	1 cut(s)	595
Eco31I	GGTCTC	2 cut(s)	295, 550
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	171
EcoRII	CCWGG	5 cut(s)	173, 306, 352, 715, 912
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	6 cut(s)	115, 260, 439, 656, 827, 950
FaqI	GGGAC	2 cut(s)	464, 939
FatI	CATG	6 cut(s)	111, 256, 435, 652, 823, 946
FblI	GTMKAC	2 cut(s)	272, 942
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	5 cut(s)	155, 392, 434, 604, 950
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	1 cut(s)	918
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	731
HapII	CCGG	2 cut(s)	44, 507
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	615
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	115, 260, 439, 656, 827, 950
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HinfI	GANTC	5 cut(s)	40, 100, 264, 314, 692
HpaII	CCGG	2 cut(s)	44, 507
HphI	GGTGA	2 cut(s)	410, 839
Hpy166II	GTNNAC	3 cut(s)	273, 394, 943
Hpy188I	TCNGA	2 cut(s)	30, 220
Hpy188III	TCNNGA	3 cut(s)	458, 653, 710
Hpy8I	GTNNAC	3 cut(s)	273, 394, 943
HpyAV	CCTTC	2 cut(s)	50, 146
HpyCH4III	ACNGT	5 cut(s)	67, 280, 398, 538, 814
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	9 cut(s)	260, 497, 523, 571, 628, 641, 647, 906, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	3 cut(s)	219, 547, 678
HpySE526I	ACGT	1 cut(s)	649
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	115, 260, 439, 656, 827, 950
HspAI	GCGC	1 cut(s)	613
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	442, 781, 804
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	1 cut(s)	904
LweI	GCATC	1 cut(s)	650
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	398, 752
MalI	GATC	3 cut(s)	444, 783, 806
MboI	GATC	3 cut(s)	442, 781, 804
MboII	GAAGA	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	804
MluCI	AATT	6 cut(s)	6, 24, 330, 666, 817, 982
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	33, 391
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	4 cut(s)	485, 663, 761, 870
MslI	CAYNNNNRTG	1 cut(s)	901
MspA1I	CMGCKG	2 cut(s)	130, 771
MspI	CCGG	2 cut(s)	44, 507
MspR9I	CCNGG	6 cut(s)	175, 308, 354, 507, 717, 914
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	5 cut(s)	175, 308, 354, 717, 914
MwoI	GCNNNNNNNGC	1 cut(s)	520
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	3 cut(s)	442, 781, 804
NlaIII	CATG	6 cut(s)	115, 260, 439, 656, 827, 950
NlaIV	GGNNCC	5 cut(s)	15, 349, 530, 714, 834
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	614
NspI	RCATGY	1 cut(s)	115
PagI	TCATGA	1 cut(s)	652
PciI	ACATGT	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	4 cut(s)	40, 264, 314, 692
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	68
PsiI	TTATAA	1 cut(s)	953
Psp6I	CCWGG	5 cut(s)	173, 306, 352, 715, 912
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	5 cut(s)	173, 306, 352, 715, 912
PspN4I	GGNNCC	5 cut(s)	15, 349, 530, 714, 834
PspPI	GGNCC	1 cut(s)	455
PstNI	CAGNNNCTG	2 cut(s)	677, 709
PsuI	RGATCY	1 cut(s)	804
PvuII	CAGCTG	2 cut(s)	130, 771
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	901
SaqAI	TTAA	4 cut(s)	485, 663, 761, 870
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	3 cut(s)	442, 781, 804
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	6 cut(s)	175, 308, 354, 507, 717, 914
SfaNI	GCATC	1 cut(s)	650
SfcI	CTRYAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	901
Sse9I	AATT	6 cut(s)	6, 24, 330, 666, 817, 982
SsiI	CCGC	2 cut(s)	47, 288
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	6 cut(s)	173, 306, 352, 505, 715, 912
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	5 cut(s)	67, 280, 398, 538, 814
TaiI	ACGT	1 cut(s)	652
TasI	AATT	6 cut(s)	6, 24, 330, 666, 817, 982
TfiI	GAWTC	4 cut(s)	40, 264, 314, 692
Tru1I	TTAA	4 cut(s)	485, 663, 761, 870
Tru9I	TTAA	4 cut(s)	485, 663, 761, 870
TscAI	CASTG	4 cut(s)	25, 91, 573, 630
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	182, 306, 810
TspRI	CASTG	4 cut(s)	25, 91, 573, 630
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	24, 666
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmiI	GTMKAC	2 cut(s)	272, 942
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.