Dicarboxylate transporter 2.1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G64290 |
| fragaria_vesca | FvH4_2g11840 FvH4_2g11840 FvH4_2g11840 |
| malus_domestica | MD05G1045600.v1.1 MD10G1052600.v1.1 |
| prunus_persica | Prupe.8G065200_v2.0.a1 |
| pyrus_communis | pycom05g03800 pycom10g03760 |
| rosa_chinensis | RchiOBHm_Chr6g0271491 |
| rosa_laevigata | RLG00000013737 |
| rosa_multiflora | Rmu_sc0001679.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00196990 |
| rosa_rugosa | Rorug06G0061100 |
| rosa_samantha | Rh6AG180300 Rh6BG186900 Rh6CG180100 Rh6DG172000 |
| rosa_wichuraiana | Rw6G015480 Rw6G015590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1512 |
| Acc65I | GGTACC | 1 cut(s) | 1477 |
| AccB1I | GGYRCC | 2 cut(s) | 278, 1477 |
| AccBSI | CCGCTC | 1 cut(s) | 75 |
| AccI | GTMKAC | 1 cut(s) | 1566 |
| AccII | CGCG | 2 cut(s) | 57, 818 |
| AciI | CCGC | 8 cut(s) | 70, 73, 132, 816, 818, 851, 945, 1551 |
| AclWI | GGATC | 1 cut(s) | 591 |
| AcoI | YGGCCR | 4 cut(s) | 693, 1276, 1355, 1623 |
| AcsI | RAATTY | 2 cut(s) | 1076, 1673 |
| AcuI | CTGAAG | 2 cut(s) | 1319, 1361 |
| AcyI | GRCGYC | 1 cut(s) | 279 |
| AfaI | GTAC | 2 cut(s) | 688, 1479 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 275, 579, 696, 773, 1030, 1204 |
| AflII | CTTAAG | 1 cut(s) | 1216 |
| AgsI | TTSAA | 5 cut(s) | 218, 227, 906, 928, 1606 |
| AhlI | ACTAGT | 1 cut(s) | 973 |
| AjnI | CCWGG | 4 cut(s) | 368, 408, 695, 1480 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 560, 592 |
| Alw21I | GWGCWC | 1 cut(s) | 835 |
| Alw26I | GTCTC | 4 cut(s) | 175, 361, 807, 1114 |
| AlwI | GGATC | 1 cut(s) | 591 |
| Ama87I | CYCGRG | 1 cut(s) | 1046 |
| AoxI | GGCC | 9 cut(s) | 316, 406, 441, 451, 693, 1276, 1355, 1623, 1681 |
| ApeKI | GCWGC | 8 cut(s) | 848, 932, 1361, 1382, 1469, 1493, 1548, 1559 |
| ApoI | RAATTY | 2 cut(s) | 1076, 1673 |
| AseI | ATTAAT | 1 cut(s) | 1632 |
| Asp718I | GGTACC | 1 cut(s) | 1477 |
| AspLEI | GCGC | 5 cut(s) | 59, 281, 330, 437, 856 |
| AspS9I | GGNCC | 4 cut(s) | 337, 441, 1058, 1681 |
| AsuC2I | CCSGG | 1 cut(s) | 748 |
| AsuHPI | GGTGA | 5 cut(s) | 135, 463, 502, 532, 755 |
| AsuNHI | GCTAGC | 1 cut(s) | 935 |
| AvaI | CYCGRG | 1 cut(s) | 1046 |
| AvaII | GGWCC | 2 cut(s) | 337, 1058 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1279, 1312 |
| BalI | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| BanI | GGYRCC | 2 cut(s) | 278, 1477 |
| BanII | GRGCYC | 2 cut(s) | 270, 422 |
| BauI | CACGAG | 1 cut(s) | 555 |
| BbsI | GAAGAC | 2 cut(s) | 575, 1114 |
| Bbv12I | GWGCWC | 1 cut(s) | 835 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 8 cut(s) | 835, 919, 1348, 1394, 1481, 1505, 1546, 1560 |
| BccI | CCATC | 4 cut(s) | 296, 314, 1403, 1615 |
| BceAI | ACGGC | 3 cut(s) | 510, 708, 861 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 936, 970 |
| BciT130I | CCWGG | 4 cut(s) | 370, 410, 697, 1482 |
| BciVI | GTATCC | 1 cut(s) | 1231 |
| BcnI | CCSGG | 1 cut(s) | 748 |
| BcoDI | GTCTC | 4 cut(s) | 175, 361, 807, 1114 |
| BcuI | ACTAGT | 1 cut(s) | 973 |
| BfaI | CTAG | 6 cut(s) | 275, 828, 936, 962, 974, 1262 |
| BfoI | RGCGCY | 2 cut(s) | 282, 438 |
| BfrI | CTTAAG | 1 cut(s) | 1216 |
| BfuI | GTATCC | 1 cut(s) | 1231 |
| Bme1390I | CCNGG | 5 cut(s) | 370, 410, 697, 748, 1482 |
| Bme18I | GGWCC | 2 cut(s) | 337, 1058 |
| BmeT110I | CYCGRG | 1 cut(s) | 1046 |
| BmgT120I | GGNCC | 4 cut(s) | 337, 441, 1058, 1681 |
| BmiI | GGNNCC | 4 cut(s) | 280, 339, 1059, 1479 |
| BmrFI | CCNGG | 5 cut(s) | 370, 410, 697, 748, 1482 |
| BmrI | ACTGGG | 2 cut(s) | 638, 1619 |
| BmsI | GCATC | 2 cut(s) | 1009, 1120 |
| BmtI | GCTAGC | 1 cut(s) | 939 |
| BmuI | ACTGGG | 2 cut(s) | 638, 1619 |
| BpiI | GAAGAC | 2 cut(s) | 575, 1114 |
| BpmI | CTGGAG | 1 cut(s) | 981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 882 |
| BpuMI | CCSGG | 1 cut(s) | 748 |
| BsaHI | GRCGYC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 6 cut(s) | 690, 696, 816, 911, 1029, 1291 |
| BsaWI | WCCGGW | 1 cut(s) | 473 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 11, 41 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 275, 579, 696, 773, 1030, 1204 |
| Bse118I | RCCGGY | 2 cut(s) | 404, 572 |
| Bse1I | ACTGG | 4 cut(s) | 347, 633, 1426, 1614 |
| Bse3DI | GCAATG | 4 cut(s) | 399, 422, 684, 1167 |
| BseBI | CCWGG | 4 cut(s) | 370, 410, 697, 1482 |
| BseDI | CCNNGG | 6 cut(s) | 690, 696, 816, 911, 1029, 1291 |
| BseGI | GGATG | 5 cut(s) | 288, 458, 1213, 1314, 1395 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 275, 579, 696, 773, 1030, 1204 |
| BseMI | GCAATG | 4 cut(s) | 399, 422, 684, 1167 |
| BseMII | CTCAG | 2 cut(s) | 407, 873 |
| BseNI | ACTGG | 4 cut(s) | 347, 633, 1426, 1614 |
| BseRI | GAGGAG | 1 cut(s) | 25 |
| BseXI | GCAGC | 8 cut(s) | 835, 919, 1348, 1394, 1481, 1505, 1546, 1560 |
| BseYI | CCCAGC | 2 cut(s) | 781, 1472 |
| Bsh1236I | CGCG | 2 cut(s) | 57, 818 |
| BshFI | GGCC | 9 cut(s) | 318, 408, 443, 453, 695, 1278, 1357, 1625, 1683 |
| BshNI | GGYRCC | 2 cut(s) | 278, 1477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 835 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1046 |
| BsiSI | CCGG | 5 cut(s) | 405, 474, 573, 674, 747 |
| BslFI | GGGAC | 2 cut(s) | 323, 721 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 275, 579, 696, 773, 1030, 1204 |
| BsmAI | GTCTC | 4 cut(s) | 175, 361, 807, 1114 |
| BsmBI | CGTCTC | 1 cut(s) | 175 |
| BsmFI | GGGAC | 2 cut(s) | 323, 721 |
| BsnI | GGCC | 9 cut(s) | 318, 408, 443, 453, 695, 1278, 1357, 1625, 1683 |
| BsoBI | CYCGRG | 1 cut(s) | 1046 |
| Bsp1286I | GDGCHC | 3 cut(s) | 270, 422, 835 |
| Bsp143I | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| Bsp19I | CCATGG | 1 cut(s) | 1029 |
| BspACI | CCGC | 8 cut(s) | 70, 73, 132, 816, 818, 851, 945, 1551 |
| BspANI | GGCC | 9 cut(s) | 318, 408, 443, 453, 695, 1278, 1357, 1625, 1683 |
| BspCNI | CTCAG | 2 cut(s) | 408, 874 |
| BspFNI | CGCG | 2 cut(s) | 57, 818 |
| BspLI | GGNNCC | 4 cut(s) | 280, 339, 1059, 1479 |
| BspOI | GCTAGC | 1 cut(s) | 939 |
| BspPI | GGATC | 1 cut(s) | 591 |
| BspT107I | GGYRCC | 2 cut(s) | 278, 1477 |
| BspTI | CTTAAG | 1 cut(s) | 1216 |
| BsrBI | CCGCTC | 1 cut(s) | 75 |
| BsrDI | GCAATG | 4 cut(s) | 399, 422, 684, 1167 |
| BsrFI | RCCGGY | 2 cut(s) | 404, 572 |
| BsrI | ACTGG | 4 cut(s) | 347, 633, 1426, 1614 |
| BssAI | RCCGGY | 2 cut(s) | 404, 572 |
| BssECI | CCNNGG | 6 cut(s) | 690, 696, 816, 911, 1029, 1291 |
| BssMI | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| BssNAI | GTATAC | 1 cut(s) | 1567 |
| BssNI | GRCGYC | 1 cut(s) | 279 |
| BssSI | CACGAG | 1 cut(s) | 555 |
| BssT1I | CCWWGG | 3 cut(s) | 911, 1029, 1291 |
| Bst1107I | GTATAC | 1 cut(s) | 1567 |
| Bst2BI | CACGAG | 1 cut(s) | 555 |
| Bst2UI | CCWGG | 4 cut(s) | 370, 410, 697, 1482 |
| Bst6I | CTCTTC | 2 cut(s) | 71, 184 |
| BstACI | GRCGYC | 1 cut(s) | 279 |
| BstAFI | CTTAAG | 1 cut(s) | 1216 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 668, 1454 |
| BstC8I | GCNNGC | 6 cut(s) | 381, 406, 937, 1276, 1355, 1359 |
| BstDEI | CTNAG | 2 cut(s) | 416, 882 |
| BstDSI | CCRYGG | 3 cut(s) | 690, 816, 1029 |
| BstF5I | GGATG | 5 cut(s) | 288, 458, 1213, 1314, 1395 |
| BstFNI | CGCG | 2 cut(s) | 57, 818 |
| BstH2I | RGCGCY | 2 cut(s) | 282, 438 |
| BstHHI | GCGC | 5 cut(s) | 59, 281, 330, 437, 856 |
| BstKTI | GATC | 5 cut(s) | 143, 525, 586, 763, 1591 |
| BstMAI | GTCTC | 4 cut(s) | 175, 361, 807, 1114 |
| BstMBI | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 503, 668, 1454, 1499 |
| BstNI | CCWGG | 4 cut(s) | 370, 410, 697, 1482 |
| BstSCI | CCNGG | 5 cut(s) | 368, 408, 695, 746, 1480 |
| BstUI | CGCG | 2 cut(s) | 57, 818 |
| BstV1I | GCAGC | 8 cut(s) | 835, 919, 1348, 1394, 1481, 1505, 1546, 1560 |
| BstV2I | GAAGAC | 2 cut(s) | 575, 1114 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 369, 1465 |
| BstZ17I | GTATAC | 1 cut(s) | 1567 |
| BsuI | GTATCC | 1 cut(s) | 1231 |
| BsuRI | GGCC | 9 cut(s) | 318, 408, 443, 453, 695, 1278, 1357, 1625, 1683 |
| BtgI | CCRYGG | 3 cut(s) | 690, 816, 1029 |
| BtgZI | GCGATG | 1 cut(s) | 292 |
| BtsCI | GGATG | 5 cut(s) | 288, 458, 1213, 1314, 1395 |
| BtsIMutI | CAGTG | 1 cut(s) | 626 |
| Cac8I | GCNNGC | 6 cut(s) | 381, 406, 937, 1276, 1355, 1359 |
| CfoI | GCGC | 5 cut(s) | 59, 281, 330, 437, 856 |
| Cfr10I | RCCGGY | 2 cut(s) | 404, 572 |
| Cfr13I | GGNCC | 4 cut(s) | 337, 441, 1058, 1681 |
| Cfr42I | CCGCGG | 1 cut(s) | 819 |
| Csp6I | GTAC | 2 cut(s) | 687, 1478 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 583, 618 |
| CviAII | CATG | 5 cut(s) | 1030, 1073, 1233, 1427, 1459 |
| CviQI | GTAC | 2 cut(s) | 687, 1478 |
| DdeI | CTNAG | 2 cut(s) | 416, 882 |
| DinI | GGCGCC | 1 cut(s) | 280 |
| DpnI | GATC | 5 cut(s) | 142, 524, 585, 762, 1590 |
| DpnII | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| EaeI | YGGCCR | 4 cut(s) | 693, 1276, 1355, 1623 |
| Eam1104I | CTCTTC | 2 cut(s) | 71, 184 |
| EarI | CTCTTC | 2 cut(s) | 71, 184 |
| EciI | GGCGGA | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 3 cut(s) | 911, 1029, 1291 |
| Eco147I | AGGCCT | 1 cut(s) | 318 |
| Eco24I | GRGCYC | 2 cut(s) | 270, 422 |
| Eco47I | GGWCC | 2 cut(s) | 337, 1058 |
| Eco57I | CTGAAG | 2 cut(s) | 1319, 1361 |
| Eco88I | CYCGRG | 1 cut(s) | 1046 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1058 |
| EcoRI | GAATTC | 1 cut(s) | 1076 |
| EcoRII | CCWGG | 4 cut(s) | 368, 408, 695, 1480 |
| EcoT14I | CCWWGG | 3 cut(s) | 911, 1029, 1291 |
| EcoT38I | GRGCYC | 2 cut(s) | 270, 422 |
| EgeI | GGCGCC | 1 cut(s) | 280 |
| EheI | GGCGCC | 1 cut(s) | 280 |
| ErhI | CCWWGG | 3 cut(s) | 911, 1029, 1291 |
| Esp3I | CGTCTC | 1 cut(s) | 175 |
| FaeI | CATG | 5 cut(s) | 1033, 1076, 1236, 1430, 1462 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 560, 592 |
| FaqI | GGGAC | 2 cut(s) | 323, 721 |
| FatI | CATG | 5 cut(s) | 1029, 1072, 1232, 1426, 1458 |
| FauI | CCCGC | 3 cut(s) | 139, 811, 952 |
| FauNDI | CATATG | 1 cut(s) | 1053 |
| FblI | GTMKAC | 1 cut(s) | 1566 |
| FokI | GGATG | 5 cut(s) | 275, 445, 1220, 1321, 1382 |
| FriOI | GRGCYC | 2 cut(s) | 270, 422 |
| FspBI | CTAG | 6 cut(s) | 275, 828, 936, 962, 974, 1262 |
| GlaI | GCGC | 5 cut(s) | 58, 280, 329, 436, 855 |
| GsaI | CCCAGC | 2 cut(s) | 785, 1476 |
| GsuI | CTGGAG | 1 cut(s) | 981 |
| HaeII | RGCGCY | 2 cut(s) | 282, 438 |
| HaeIII | GGCC | 9 cut(s) | 318, 408, 443, 453, 695, 1278, 1357, 1625, 1683 |
| HapII | CCGG | 5 cut(s) | 405, 474, 573, 674, 747 |
| HhaI | GCGC | 5 cut(s) | 59, 281, 330, 437, 856 |
| Hin1I | GRCGYC | 1 cut(s) | 279 |
| Hin1II | CATG | 5 cut(s) | 1033, 1076, 1236, 1430, 1462 |
| Hin6I | GCGC | 5 cut(s) | 57, 279, 328, 435, 854 |
| HinP1I | GCGC | 5 cut(s) | 57, 279, 328, 435, 854 |
| HincII | GTYRAC | 1 cut(s) | 648 |
| HindII | GTYRAC | 1 cut(s) | 648 |
| HindIII | AAGCTT | 1 cut(s) | 986 |
| HinfI | GANTC | 1 cut(s) | 1194 |
| HpaII | CCGG | 5 cut(s) | 405, 474, 573, 674, 747 |
| HphI | GGTGA | 5 cut(s) | 135, 463, 502, 532, 755 |
| Hpy166II | GTNNAC | 3 cut(s) | 648, 755, 1567 |
| Hpy188I | TCNGA | 6 cut(s) | 140, 163, 417, 588, 795, 1127 |
| Hpy188III | TCNNGA | 3 cut(s) | 565, 998, 1595 |
| Hpy8I | GTNNAC | 3 cut(s) | 648, 755, 1567 |
| Hpy99I | CGWCG | 1 cut(s) | 434 |
| HpyAV | CCTTC | 6 cut(s) | 49, 112, 184, 304, 553, 1343 |
| HpyCH4IV | ACGT | 1 cut(s) | 1584 |
| HpyCH4V | TGCA | 5 cut(s) | 1160, 1364, 1412, 1448, 1462 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 503, 668, 1454, 1499 |
| HpyF3I | CTNAG | 2 cut(s) | 416, 882 |
| HpySE526I | ACGT | 1 cut(s) | 1584 |
| Hsp92I | GRCGYC | 1 cut(s) | 279 |
| Hsp92II | CATG | 5 cut(s) | 1033, 1076, 1236, 1430, 1462 |
| HspAI | GCGC | 5 cut(s) | 57, 279, 328, 435, 854 |
| KasI | GGCGCC | 1 cut(s) | 278 |
| KpnI | GGTACC | 1 cut(s) | 1481 |
| KroI | GCCGGC | 1 cut(s) | 404 |
| KroNI | GCCGGC | 1 cut(s) | 406 |
| KspI | CCGCGG | 1 cut(s) | 819 |
| Kzo9I | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| LmnI | GCTCC | 2 cut(s) | 676, 1574 |
| Lsp1109I | GCAGC | 8 cut(s) | 835, 919, 1348, 1394, 1481, 1505, 1546, 1560 |
| LweI | GCATC | 2 cut(s) | 1009, 1120 |
| MaeI | CTAG | 6 cut(s) | 275, 828, 936, 962, 974, 1262 |
| MaeII | ACGT | 1 cut(s) | 1584 |
| MaeIII | GTNAC | 5 cut(s) | 469, 821, 1063, 1153, 1580 |
| MalI | GATC | 5 cut(s) | 142, 524, 585, 762, 1590 |
| MbiI | CCGCTC | 1 cut(s) | 75 |
| MboI | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| MboII | GAAGA | 9 cut(s) | 58, 117, 171, 538, 541, 580, 1114, 1367, 1583 |
| MfeI | CAATTG | 2 cut(s) | 374, 1280 |
| MhlI | GDGCHC | 3 cut(s) | 270, 422, 835 |
| MlsI | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| MluNI | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| Mly113I | GGCGCC | 1 cut(s) | 279 |
| MlyI | GAGTC | 1 cut(s) | 1203 |
| Mox20I | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| MroNI | GCCGGC | 1 cut(s) | 404 |
| MscI | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| MseI | TTAA | 6 cut(s) | 726, 842, 873, 1217, 1535, 1632 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1431 |
| Msp20I | TGGCCA | 3 cut(s) | 1278, 1357, 1625 |
| MspA1I | CMGCKG | 4 cut(s) | 818, 1361, 1472, 1551 |
| MspCI | CTTAAG | 1 cut(s) | 1216 |
| MspI | CCGG | 5 cut(s) | 405, 474, 573, 674, 747 |
| MspR9I | CCNGG | 5 cut(s) | 370, 410, 697, 748, 1482 |
| MunI | CAATTG | 2 cut(s) | 374, 1280 |
| MvaI | CCWGG | 4 cut(s) | 370, 410, 697, 1482 |
| MvnI | CGCG | 2 cut(s) | 57, 818 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 503, 668, 1454, 1499 |
| NaeI | GCCGGC | 1 cut(s) | 406 |
| NarI | GGCGCC | 1 cut(s) | 279 |
| NciI | CCSGG | 1 cut(s) | 748 |
| NcoI | CCATGG | 1 cut(s) | 1029 |
| NdeI | CATATG | 1 cut(s) | 1053 |
| NdeII | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| NgoMIV | GCCGGC | 1 cut(s) | 404 |
| NheI | GCTAGC | 1 cut(s) | 935 |
| NlaIII | CATG | 5 cut(s) | 1033, 1076, 1236, 1430, 1462 |
| NlaIV | GGNNCC | 4 cut(s) | 280, 339, 1059, 1479 |
| NmeAIII | GCCGAG | 2 cut(s) | 429, 708 |
| NmuCI | GTSAC | 2 cut(s) | 469, 1063 |
| PaeR7I | CTCGAG | 1 cut(s) | 1046 |
| PceI | AGGCCT | 1 cut(s) | 318 |
| PdiI | GCCGGC | 1 cut(s) | 406 |
| PleI | GAGTC | 1 cut(s) | 1202 |
| PluTI | GGCGCC | 1 cut(s) | 282 |
| PpsI | GAGTC | 1 cut(s) | 1202 |
| PpuMI | RGGWCCY | 1 cut(s) | 1058 |
| PshBI | ATTAAT | 1 cut(s) | 1632 |
| PsiI | TTATAA | 1 cut(s) | 1512 |
| Psp5II | RGGWCCY | 1 cut(s) | 1058 |
| Psp6I | CCWGG | 4 cut(s) | 368, 408, 695, 1480 |
| PspFI | CCCAGC | 2 cut(s) | 781, 1472 |
| PspGI | CCWGG | 4 cut(s) | 368, 408, 695, 1480 |
| PspN4I | GGNNCC | 4 cut(s) | 280, 339, 1059, 1479 |
| PspPI | GGNCC | 4 cut(s) | 337, 441, 1058, 1681 |
| PspPPI | RGGWCCY | 1 cut(s) | 1058 |
| PspXI | VCTCGAGB | 1 cut(s) | 1046 |
| PvuII | CAGCTG | 2 cut(s) | 1361, 1472 |
| RsaI | GTAC | 2 cut(s) | 688, 1479 |
| RsaNI | GTAC | 2 cut(s) | 687, 1478 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1431 |
| SacII | CCGCGG | 1 cut(s) | 819 |
| SaqAI | TTAA | 6 cut(s) | 726, 842, 873, 1217, 1535, 1632 |
| Sau3AI | GATC | 5 cut(s) | 140, 522, 583, 760, 1588 |
| Sau96I | GGNCC | 4 cut(s) | 337, 441, 1058, 1681 |
| SchI | GAGTC | 1 cut(s) | 1203 |
| ScrFI | CCNGG | 5 cut(s) | 370, 410, 697, 748, 1482 |
| SduI | GDGCHC | 3 cut(s) | 270, 422, 835 |
| SfaNI | GCATC | 2 cut(s) | 1009, 1120 |
| SfoI | GGCGCC | 1 cut(s) | 280 |
| Sfr274I | CTCGAG | 1 cut(s) | 1046 |
| Sfr303I | CCGCGG | 1 cut(s) | 819 |
| SgrBI | CCGCGG | 1 cut(s) | 819 |
| SinI | GGWCC | 2 cut(s) | 337, 1058 |
| SlaI | CTCGAG | 1 cut(s) | 1046 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1431 |
| SmlI | CTYRAG | 2 cut(s) | 1046, 1216 |
| SmoI | CTYRAG | 2 cut(s) | 1046, 1216 |
| SpeI | ACTAGT | 1 cut(s) | 973 |
| SseBI | AGGCCT | 1 cut(s) | 318 |
| SsiI | CCGC | 8 cut(s) | 70, 73, 132, 816, 818, 851, 945, 1551 |
| SspDI | GGCGCC | 1 cut(s) | 278 |
| SspMI | CTAG | 6 cut(s) | 275, 828, 936, 962, 974, 1262 |
| StuI | AGGCCT | 1 cut(s) | 318 |
| StyD4I | CCNGG | 5 cut(s) | 368, 408, 695, 746, 1480 |
| StyI | CCWWGG | 3 cut(s) | 911, 1029, 1291 |
| TaiI | ACGT | 1 cut(s) | 1587 |
| TaqI | TCGA | 3 cut(s) | 351, 770, 1047 |
| TauI | GCSGC | 2 cut(s) | 75, 854 |
| Tru1I | TTAA | 6 cut(s) | 726, 842, 873, 1217, 1535, 1632 |
| Tru9I | TTAA | 6 cut(s) | 726, 842, 873, 1217, 1535, 1632 |
| TscAI | CASTG | 1 cut(s) | 633 |
| TseFI | GTSAC | 2 cut(s) | 469, 1063 |
| TseI | GCWGC | 8 cut(s) | 848, 932, 1361, 1382, 1469, 1493, 1548, 1559 |
| Tsp45I | GTSAC | 2 cut(s) | 469, 1063 |
| TspDTI | ATGAA | 4 cut(s) | 94, 286, 1069, 1089 |
| TspGWI | ACGGA | 1 cut(s) | 1587 |
| TspRI | CASTG | 1 cut(s) | 633 |
| Vha464I | CTTAAG | 1 cut(s) | 1216 |
| VpaK11BI | GGWCC | 2 cut(s) | 337, 1058 |
| VspI | ATTAAT | 1 cut(s) | 1632 |
| XapI | RAATTY | 2 cut(s) | 1076, 1673 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 406 |
| XhoI | CTCGAG | 1 cut(s) | 1046 |
| XmiI | GTMKAC | 1 cut(s) | 1566 |
| XspI | CTAG | 6 cut(s) | 275, 828, 936, 962, 974, 1262 |