Rorug06G0061100

Dicarboxylate transporter 2.1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8198096 .. 8198404
309 bp
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UTR
Exon/CDS
Intron
Rorug06G0061100.1

Sequence Viewer

Length: 309 bp
ATGTTGGTATCTCAAAACAACAACTTGTCCACTGATGATCTTGAATTGCCTATCTACATCACGGAAGATGGCGGCAAGACAGCTGGACAATACAATTCTTTGTTGTACCTTCCACCGTCAATACTCCTAGCCAGCAATAACATAACTGGAAATATACCGATTGAAATTGACCAATTGCAGCTTCTCCATCAGTTGTCCCTTAAAAACAATTTCTTCACCGACAAGATTCCAGACCAAACTCCCAACCTCAAACACTTGGCAACATCAGATCTCTCCTTAAATCATTTATCTGGATACCAGCATCATTAA

Protein Analysis

102

Amino Acids

11.37

Weight (kDa)

4.98

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 2 cut(s) 44, 164
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 2 cut(s) 83, 181
AluI AGCT 2 cut(s) 83, 181
ApeKI GCWGC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 208
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 62, 195
BciVI GTATCC 1 cut(s) 287
BfaI CTAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 268
BisI GCNGC 2 cut(s) 73, 179
BlsI GCNGC 2 cut(s) 74, 180
Bse1I ACTGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 37, 268
BspACI CCGC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 151
BssMI GATC 2 cut(s) 37, 268
Bst4CI ACNGT 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 40, 271
BstMBI GATC 2 cut(s) 37, 268
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuI GTATCC 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 3 cut(s) 83, 131, 181
CviKI_1 RGCY 3 cut(s) 83, 131, 181
CviQI GTAC 1 cut(s) 106
DpnI GATC 2 cut(s) 39, 270
DpnII GATC 2 cut(s) 37, 268
FaiI YATR 2 cut(s) 143, 155
FaqI GGGAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 73, 179
Fsp4HI GCNGC 2 cut(s) 73, 179
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 73, 179
HinfI GANTC 1 cut(s) 226
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 41, 230, 291
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 178
Kzo9I GATC 2 cut(s) 37, 268
LpnPI CCDG 5 cut(s) 69, 132, 145, 243, 276
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 128
MalI GATC 2 cut(s) 39, 270
MboI GATC 2 cut(s) 37, 268
MboII GAAGA 2 cut(s) 77, 205
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 268
MluCI AATT 5 cut(s) 44, 94, 165, 173, 208
MnlI CCTC 1 cut(s) 257
MseI TTAA 3 cut(s) 201, 278, 307
MspA1I CMGCKG 1 cut(s) 83
MunI CAATTG 1 cut(s) 173
NdeII GATC 2 cut(s) 37, 268
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 74, 180
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 3 cut(s) 201, 278, 307
SatI GCNGC 2 cut(s) 73, 179
Sau3AI GATC 2 cut(s) 37, 268
SetI ASST 4 cut(s) 85, 111, 183, 249
Sse9I AATT 5 cut(s) 44, 94, 165, 173, 208
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 117
TasI AATT 5 cut(s) 44, 94, 165, 173, 208
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 3 cut(s) 201, 278, 307
Tru9I TTAA 3 cut(s) 201, 278, 307
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 37
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.