Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012575

Physical Location & Seq

Genomic Coordinates Reverse (-)

10536120 .. 10539990

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G072000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTGGGAAGAAATTTGCTGTGCTTTTGTGTGCAGAGGACTCGGAGTACGTGAAGAAGATGTATGGGGGGTACTTTGGGGTTTTTCTGAAAATGCTAGCTGAGGAAGGGGAGGCCTGGGACCTGTACAGAGTGGCGTGTGGGGAGTTCCCATTGGATGAGGAGATTGATGGCTATGACGGGTTTGTGATATCTGGCAGCAGCAGAGATGCCCATGGCAATGATGCTTGGATCTGCAGGCTCTTGGCCCTCCTGAAGAAATTGGATGACATGAAGAAGAAGGTCCTGGGCATTTGCTTTGGCCACCAGATTTTGAGCCGTGCGTTGGGAGGAAAATCCGGCAGGGCCATCACCGGGTGGGACATAGGAATCCGGACCGTCCACTTGTCAGCATCTTCCAAGGCTTTCTCATCTCTCAAAATTCCAGCTCTTCTCTCCATATATGAAATCCATCGAGATGAGGTGTGGGAGCTTCCTCCTAAGGCTGAGTTGATTGCATGGTCGGAGAAGACTGGGGTGGAGATGTTCAAGTATGGAGATCACATCATGGGCATCCAAGGCCACCCTGAGTACACCAAGGACATCCTTCTCAACCTTATTGATCGTCTCGTGAAACTCGAATACATCGTGGACACTGAAACTGAGGAGTTGAAGGCCAAGCTGCAGGCGAGTGAGCCAGACCAAGAGGCATGGAAGAGTGTCTGCAGAAGCTTTCTCAAGGGAGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

244

Amino Acids

27.31

Weight (kDa)

5.48

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11460
malus_domestica	MD10G1055700.v1.1
prunus_persica	Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1
pyrus_communis	pycom05g04040 pycom10g04260
rosa_chinensis	RchiOBHm_Chr6g0270211
rosa_laevigata	RLG00000013808
rosa_multiflora	Rmu_co8416353.1_g000001 Rmu_sc0002817.1_g000002 Rmu_sc0002817.1_g000003 Rmu_sc0042204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198060
rosa_rugosa	Rorug06G0053600
rosa_samantha	Rh6AG172200 Rh6BG176500 Rh6CG172300 Rh6DG163500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	372
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	14, 420
AcuI	CTGAAG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	357
AfaI	GTAC	4 cut(s)	50, 74, 128, 572
AfiI	CCNNNNNNNGG	2 cut(s)	325, 354
AgsI	TTSAA	2 cut(s)	529, 652
AjnI	CCWGG	2 cut(s)	116, 285
AluBI	AGCT	5 cut(s)	101, 428, 472, 661, 711
AluI	AGCT	5 cut(s)	101, 428, 472, 661, 711
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	6 cut(s)	114, 246, 301, 345, 559, 654
ApeKI	GCWGC	3 cut(s)	198, 201, 661
ApoI	RAATTY	2 cut(s)	14, 420
AspS9I	GGNCC	5 cut(s)	121, 247, 283, 345, 375
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	121, 283, 375
AxyI	CCTNAGG	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	303
BauI	CACGAG	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	210, 213, 648
BccI	CCATC	3 cut(s)	164, 356, 459
BceAI	ACGGC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	2 cut(s)	118, 287
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	3 cut(s)	235, 662, 703
BisI	GCNGC	3 cut(s)	199, 202, 662
BlsI	GCNGC	3 cut(s)	200, 203, 663
Bme1390I	CCNGG	3 cut(s)	118, 287, 355
Bme18I	GGWCC	3 cut(s)	121, 283, 375
BmgT120I	GGNCC	5 cut(s)	121, 247, 283, 345, 375
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	3 cut(s)	118, 287, 355
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	4 cut(s)	199, 214, 401, 561
BmtI	GCTAGC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	117, 214, 286, 399, 556, 576
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 354
Bse1I	ACTGG	1 cut(s)	517
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	226
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	118, 287
BseDI	CCNNGG	6 cut(s)	117, 214, 286, 399, 556, 576
BseGI	GGATG	4 cut(s)	163, 271, 552, 582
BseLI	CCNNNNNNNGG	2 cut(s)	325, 354
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	4 cut(s)	93, 477, 558, 633
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	176, 659
BseXI	GCAGC	3 cut(s)	210, 213, 648
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	6 cut(s)	116, 248, 303, 347, 561, 656
BsiSI	CCGG	3 cut(s)	339, 354, 373
BslFI	GGGAC	2 cut(s)	134, 374
BslI	CCNNNNNNNGG	2 cut(s)	325, 354
BsmAI	GTCTC	1 cut(s)	611
BsmBI	CGTCTC	1 cut(s)	611
BsmFI	GGGAC	2 cut(s)	134, 374
BsnI	GGCC	6 cut(s)	116, 248, 303, 347, 561, 656
Bsp13I	TCCGGA	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	231, 538, 601
Bsp19I	CCATGG	1 cut(s)	214
BspANI	GGCC	6 cut(s)	116, 248, 303, 347, 561, 656
BspCNI	CTCAG	4 cut(s)	94, 478, 559, 634
BspEI	TCCGGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	3 cut(s)	239, 666, 707
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	117, 214, 286, 399, 556, 576
BssMI	GATC	3 cut(s)	231, 538, 601
BssSI	CACGAG	1 cut(s)	608
BssT1I	CCWWGG	4 cut(s)	214, 399, 556, 576
Bst2BI	CACGAG	1 cut(s)	608
Bst2UI	CCWGG	2 cut(s)	118, 287
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	435, 689
BstAUI	TGTACA	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	99, 239, 666
BstDEI	CTNAG	5 cut(s)	102, 480, 486, 567, 642
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	4 cut(s)	163, 271, 552, 582
BstKTI	GATC	3 cut(s)	234, 541, 604
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	3 cut(s)	231, 538, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	2 cut(s)	118, 287
BstSCI	CCNGG	3 cut(s)	116, 285, 353
BstSFI	CTRYAG	3 cut(s)	235, 662, 703
BstV1I	GCAGC	3 cut(s)	210, 213, 648
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	6 cut(s)	116, 248, 303, 347, 561, 656
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	163, 271, 552, 582
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	99, 239, 666
Cfr13I	GGNCC	5 cut(s)	121, 247, 283, 345, 375
CpoI	CGGWCCG	1 cut(s)	375
Csp6I	GTAC	4 cut(s)	49, 73, 127, 571
CspI	CGGWCCG	1 cut(s)	375
CviAII	CATG	5 cut(s)	215, 271, 498, 547, 690
CviQI	GTAC	4 cut(s)	49, 73, 127, 571
DdeI	CTNAG	5 cut(s)	102, 480, 486, 567, 642
DpnI	GATC	3 cut(s)	233, 540, 603
DpnII	GATC	3 cut(s)	231, 538, 601
DraIII	CACNNNGTG	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	435, 689
EarI	CTCTTC	2 cut(s)	435, 689
Eco130I	CCWWGG	4 cut(s)	214, 399, 556, 576
Eco147I	AGGCCT	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	121, 283, 375
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	2 cut(s)	121, 283
EcoRII	CCWGG	2 cut(s)	116, 285
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	4 cut(s)	214, 399, 556, 576
ErhI	CCWWGG	4 cut(s)	214, 399, 556, 576
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	5 cut(s)	218, 274, 501, 550, 693
FaqI	GGGAC	2 cut(s)	134, 374
FatI	CATG	5 cut(s)	214, 270, 497, 546, 689
Fnu4HI	GCNGC	3 cut(s)	199, 202, 662
FokI	GGATG	4 cut(s)	170, 278, 539, 569
Fsp4HI	GCNGC	3 cut(s)	199, 202, 662
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	3 cut(s)	199, 202, 662
HaeIII	GGCC	6 cut(s)	116, 248, 303, 347, 561, 656
HapII	CCGG	3 cut(s)	339, 354, 373
Hin1II	CATG	5 cut(s)	218, 274, 501, 550, 693
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	2 cut(s)	41, 369
HpaII	CCGG	3 cut(s)	339, 354, 373
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	382, 573, 631
Hpy188I	TCNGA	3 cut(s)	46, 90, 505
Hpy188III	TCNNGA	4 cut(s)	253, 373, 455, 610
Hpy8I	GTNNAC	3 cut(s)	382, 573, 631
HpyAV	CCTTC	4 cut(s)	101, 274, 596, 646
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	35, 237, 497, 664, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	5 cut(s)	102, 480, 486, 567, 642
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	218, 274, 501, 550, 693
Kpn2I	TCCGGA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	231, 538, 601
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	3 cut(s)	210, 213, 648
LweI	GCATC	4 cut(s)	199, 214, 401, 561
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	51
MalI	GATC	3 cut(s)	233, 540, 603
MboI	GATC	3 cut(s)	231, 538, 601
MflI	RGATCY	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	4 cut(s)	14, 260, 420, 725
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	303
MroI	TCCGGA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	219, 456
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	3 cut(s)	339, 354, 373
MspR9I	CCNGG	3 cut(s)	118, 287, 355
MvaI	CCWGG	2 cut(s)	118, 287
MwoI	GCNNNNNNNGC	1 cut(s)	558
NciI	CCSGG	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	231, 538, 601
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	218, 274, 501, 550, 693
NlaIV	GGNNCC	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	615, 624
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	200, 203, 663
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	52
PpuMI	RGGWCCY	2 cut(s)	121, 283
Psp5II	RGGWCCY	2 cut(s)	121, 283
Psp6I	CCWGG	2 cut(s)	116, 285
PspGI	CCWGG	2 cut(s)	116, 285
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	5 cut(s)	121, 247, 283, 345, 375
PspPPI	RGGWCCY	2 cut(s)	121, 283
PstI	CTGCAG	3 cut(s)	239, 666, 707
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	4 cut(s)	50, 74, 128, 572
RsaNI	GTAC	4 cut(s)	49, 73, 127, 571
RseI	CAYNNNNRTG	2 cut(s)	219, 456
Rsr2I	CGGWCCG	1 cut(s)	375
RsrII	CGGWCCG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	435
SatI	GCNGC	3 cut(s)	199, 202, 662
Sau3AI	GATC	3 cut(s)	231, 538, 601
Sau96I	GGNCC	5 cut(s)	121, 247, 283, 345, 375
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	118, 287, 355
SfaNI	GCATC	4 cut(s)	199, 214, 401, 561
SfcI	CTRYAG	3 cut(s)	235, 662, 703
SinI	GGWCC	3 cut(s)	121, 283, 375
SmiMI	CAYNNNNRTG	2 cut(s)	219, 456
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	4 cut(s)	14, 260, 420, 725
SseBI	AGGCCT	1 cut(s)	116
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	3 cut(s)	116, 285, 353
StyI	CCWWGG	4 cut(s)	214, 399, 556, 576
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	454, 618
TasI	AATT	4 cut(s)	14, 260, 420, 725
TatI	WGTACW	2 cut(s)	126, 570
TfiI	GAWTC	1 cut(s)	369
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	3 cut(s)	198, 201, 661
TspDTI	ATGAA	2 cut(s)	287, 459
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	3 cut(s)	121, 283, 375
XapI	RAATTY	2 cut(s)	14, 420
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.