Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012575

Physical Location & Seq

Genomic Coordinates Reverse (-)

41385261 .. 41390698

Gene Structure 5438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAGGGAAGAAATTTGGGGTTCTGCTGTGCGCAGAGGACTCGGACTTTGTGAAGAAGATGTACGGTGGGTATTTTGGGGTGTTTGTGAAAATGCTGGCGGAGGAAGGCGAGACTTGGGACCTGTACCGAGTGGCCTGCGGCGAGTTTCCCGACGACGACGAGGTCGAGAGCTACGACGGGTTTGTTATCTCCGGGAGTAGCAGAGACGCTCATGGGAATGATGCTTGGATCTGCCGACTCTTGACTCTCCTGACCAAACTGGATTCCCTCAAGAAAAAGGTCCTCGGCATTTGCTTCGGCCATCAGATACTGAGTCGTGCACTGGGTGGCAAATCTGGTAGGGCTATCACAGGGTGGGATATCGGAATCCGAACCGTCCACTTGTCATCGTCTTCCAAGATCTTCTCCTCCCTCAAGATTCCAGCTTTTCTCTCCATCTATGAGATCCATCGAGATGAGGTGTGGGAACTTCCACCAAAGGCTGAGCTAATTGCATGGTCGGAAAAGACTGGGGTTGAGATGTTCAAGTATGGTGATCACATCATGGGCATCCAAGGCCACCCTGAATACACCAAAGACATTCTTCTTAACCTCATTGATCGTCTCGTCAAGCTTAACTTCATCTTGGATTCCGAAACTGAGGAGTTGAAGGCAAAGGTGCTTGCTCGTGAACCAGATAGGGAGGCATGGAGAAGGCTGTGCTTAAACTTTCTGAAAGAGTGCGGTGGTGGAACTGGGTTTAAGCAGAAGGATCTGATCTTGAGGTCGTCTTCTCATATTTCTGTCGCCGGATCTCGAAGGAGGAAGGCTCGTTCTGTTGCATATTGGCGAGCAGGTCGAGTCGAGCAGATTGGGTTGAGTGGTGATCGTTCTGATCGTTGGTGTGCAGATCCAGTTGGTTTTGGATCTTTGCTGATTGCAGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

311

Amino Acids

34.76

Weight (kDa)

8.09

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	55 - 192	4.3e-14	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	84 - 190	5.1e-06	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11460
malus_domestica	MD10G1055700.v1.1
prunus_persica	Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1
pyrus_communis	pycom05g04040 pycom10g04260
rosa_chinensis	RchiOBHm_Chr6g0270211
rosa_laevigata	RLG00000013808
rosa_multiflora	Rmu_co8416353.1_g000001 Rmu_sc0002817.1_g000002 Rmu_sc0002817.1_g000003 Rmu_sc0042204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198060
rosa_rugosa	Rorug06G0053600
rosa_samantha	Rh6AG172200 Rh6BG176500 Rh6CG172300 Rh6DG163500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc16I	TGCGCA	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	827
AciI	CCGC	3 cut(s)	101, 141, 726
AclWI	GGATC	6 cut(s)	239, 442, 762, 802, 887, 916
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	14
AdeI	CACNNNGTG	2 cut(s)	329, 357
AfaI	GTAC	2 cut(s)	65, 128
AgsI	TTSAA	2 cut(s)	529, 652
AloI	GAACNNNNNNTCC	2 cut(s)	799, 831
AluBI	AGCT	4 cut(s)	174, 428, 490, 616
AluI	AGCT	4 cut(s)	174, 428, 490, 616
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	107, 201, 611
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	6 cut(s)	239, 442, 762, 802, 887, 916
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	3 cut(s)	135, 301, 559
ApaLI	GTGCAC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	121, 283
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	548, 878
AvaII	GGWCC	2 cut(s)	121, 283
BaeGI	GKGCMC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BauI	CACGAG	1 cut(s)	669
BbsI	GAAGAC	2 cut(s)	387, 765
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	3 cut(s)	312, 446, 459
BcgI	CGANNNNNNTGC	6 cut(s)	24, 58, 120, 154, 280, 314
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	107, 201, 611
BfuAI	ACCTGC	1 cut(s)	827
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	121, 283
BmgT120I	GGNCC	2 cut(s)	121, 283
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	3 cut(s)	335, 522, 747
BmsI	GCATC	2 cut(s)	214, 561
BmuI	ACTGGG	3 cut(s)	335, 522, 747
BpiI	GAAGAC	2 cut(s)	387, 765
BplI	GAGNNNNNCTC	2 cut(s)	796, 828
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	3 cut(s)	257, 401, 784
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	286, 556
Bse1I	ACTGG	5 cut(s)	267, 330, 517, 742, 896
BseDI	CCNNGG	2 cut(s)	286, 556
BseGI	GGATG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	305, 477, 633
BseNI	ACTGG	5 cut(s)	267, 330, 517, 742, 896
BseRI	GAGGAG	2 cut(s)	400, 659
BseSI	GKGCMC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	3 cut(s)	137, 303, 561
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	195, 792
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	3 cut(s)	107, 201, 611
BsmBI	CGTCTC	2 cut(s)	201, 611
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	137, 303, 561
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	101, 141, 726
BspANI	GGCC	3 cut(s)	137, 303, 561
BspCNI	CTCAG	3 cut(s)	306, 478, 634
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	827
BspPI	GGATC	6 cut(s)	239, 442, 762, 802, 887, 916
BsrI	ACTGG	5 cut(s)	267, 330, 517, 742, 896
BssECI	CCNNGG	2 cut(s)	286, 556
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	68, 379
BstC8I	GCNNGC	4 cut(s)	99, 139, 666, 834
BstDEI	CTNAG	3 cut(s)	314, 486, 642
BstF5I	GGATG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	3 cut(s)	107, 201, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	325
BstV2I	GAAGAC	2 cut(s)	387, 765
BstX2I	RGATCY	7 cut(s)	231, 402, 447, 754, 794, 892, 908
BstYI	RGATCY	7 cut(s)	231, 402, 447, 754, 794, 892, 908
BsuRI	GGCC	3 cut(s)	137, 303, 561
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	827
Cac8I	GCNNGC	4 cut(s)	99, 139, 666, 834
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	121, 283
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	64, 127
CviAII	CATG	4 cut(s)	215, 498, 547, 690
CviQI	GTAC	2 cut(s)	64, 127
DdeI	CTNAG	3 cut(s)	314, 486, 642
DraIII	CACNNNGTG	2 cut(s)	329, 357
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	121, 283
EcoO109I	RGGNCCY	2 cut(s)	121, 283
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
Esp3I	CGTCTC	2 cut(s)	201, 611
FaeI	CATG	4 cut(s)	218, 501, 550, 693
FaiI	YATR	8 cut(s)	216, 444, 499, 534, 548, 691, 780, 826
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 605, 637
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	214, 497, 546, 689
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	142
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	137, 303, 561
HapII	CCGG	2 cut(s)	195, 792
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	218, 501, 550, 693
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	9 cut(s)	41, 240, 247, 266, 316, 369, 421, 632, 843
HpaII	CCGG	2 cut(s)	195, 792
HphI	GGTGA	2 cut(s)	548, 878
Hpy166II	GTNNAC	3 cut(s)	323, 382, 674
Hpy188I	TCNGA	9 cut(s)	46, 309, 368, 374, 505, 637, 717, 759, 877
Hpy8I	GTNNAC	3 cut(s)	323, 382, 674
Hpy99I	CGWCG	4 cut(s)	158, 161, 164, 182
HpyAV	CCTTC	6 cut(s)	101, 646, 690, 745, 795, 802
HpyCH4III	ACNGT	2 cut(s)	68, 379
HpyCH4V	TGCA	5 cut(s)	323, 497, 824, 890, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	3 cut(s)	314, 486, 642
Hsp92II	CATG	4 cut(s)	218, 501, 550, 693
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	538
LweI	GCATC	2 cut(s)	214, 561
MboII	GAAGA	7 cut(s)	22, 67, 70, 387, 397, 578, 765
MflI	RGATCY	7 cut(s)	231, 402, 447, 754, 794, 892, 908
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	14, 492
MlyI	GAGTC	5 cut(s)	35, 234, 241, 325, 852
MmeI	TCCRAC	1 cut(s)	483
MseI	TTAA	4 cut(s)	591, 618, 707, 744
MslI	CAYNNNNRTG	2 cut(s)	219, 456
MspI	CCGG	2 cut(s)	195, 792
MspR9I	CCNGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	558
NciI	CCSGG	1 cut(s)	196
NlaIII	CATG	4 cut(s)	218, 501, 550, 693
NlaIV	GGNNCC	1 cut(s)	122
NmeAIII	GCCGAG	1 cut(s)	267
NsbI	TGCGCA	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 174, 877
PfeI	GAWTC	4 cut(s)	266, 369, 421, 632
PflFI	GACNNNGTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	5 cut(s)	35, 234, 241, 324, 851
PpsI	GAGTC	5 cut(s)	35, 234, 241, 324, 851
PpuMI	RGGWCCY	2 cut(s)	121, 283
Psp5II	RGGWCCY	2 cut(s)	121, 283
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	121, 283
PspPPI	RGGWCCY	2 cut(s)	121, 283
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	7 cut(s)	231, 402, 447, 754, 794, 892, 908
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	65, 128
RsaNI	GTAC	2 cut(s)	64, 127
RseI	CAYNNNNRTG	2 cut(s)	219, 456
SaqAI	TTAA	4 cut(s)	591, 618, 707, 744
SatI	GCNGC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	121, 283
SchI	GAGTC	5 cut(s)	35, 234, 241, 325, 852
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	214, 561
SinI	GGWCC	2 cut(s)	121, 283
SmiMI	CAYNNNNRTG	2 cut(s)	219, 456
SmlI	CTYRAG	3 cut(s)	272, 416, 763
SmoI	CTYRAG	3 cut(s)	272, 416, 763
Sse9I	AATT	2 cut(s)	14, 492
SsiI	CCGC	3 cut(s)	101, 141, 726
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	68, 379
TaqI	TCGA	5 cut(s)	168, 454, 799, 841, 846
TasI	AATT	2 cut(s)	14, 492
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	4 cut(s)	266, 369, 421, 632
Tru1I	TTAA	4 cut(s)	591, 618, 707, 744
Tru9I	TTAA	4 cut(s)	591, 618, 707, 744
TscAI	CASTG	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	2 cut(s)	121, 283
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.