Rmu_sc0042204.1_g000001

glutamine amidotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042204.1
OG0012575
Physical Location & Seq
Reverse (-)
327 .. 905
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042204.1_g000001.1.cds

Sequence Viewer

Length: 408 bp
ctgggtggcaaatctggtagggctatcacagggtgggatatcggaatccgaaccgtccacttgtcatcgtcttccaagatcttctcctccctcaagattccagctcttctgtccatctatgagatccatcgagatgaggtgtgggaacttccaccaaaggctgagctaattgcatggtcggaaaagactggggttgagatgttcaagtacggtgatcacatcatgggcatccaaggccaccctgaatacaccaaagacattcttcttaacctcattgatcgtctggtcaagcttaacttcatcttggattccgaaactgaggatttgaaggcaaaggtgcttgctcgtgaaccagatagggaggcatggagaaggctgtgcttaaactttctgaaaggtggattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATase

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

7.1

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 2 cut(s) 205, 328
AluBI AGCT 3 cut(s) 104, 166, 292
AluI AGCT 3 cut(s) 104, 166, 292
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 224
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 2 cut(s) 122, 135
BclI TGATCA 1 cut(s) 214
BglII AGATCT 1 cut(s) 78
BlpI GCTNAGC 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 153, 309
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 76
BshFI GGCC 1 cut(s) 237
BsnI GGCC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 78, 123, 214, 277
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 154, 310
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 4 cut(s) 78, 123, 214, 277
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 55, 212
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 162, 318
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 4 cut(s) 81, 126, 217, 280
BstMBI GATC 4 cut(s) 78, 123, 214, 277
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 2 cut(s) 78, 123
BstYI RGATCY 2 cut(s) 78, 123
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 174, 223, 366
CviJI RGCY 7 cut(s) 23, 104, 161, 166, 237, 292, 376
CviKI_1 RGCY 7 cut(s) 23, 104, 161, 166, 237, 292, 376
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 162, 318
DpnI GATC 4 cut(s) 80, 125, 216, 279
DpnII GATC 4 cut(s) 78, 123, 214, 277
DraIII CACNNNGTG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 232
Eco32I GATATC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 177, 226, 369
FaiI YATR 5 cut(s) 120, 175, 224, 367, 406
FalI AAGNNNNNCTT 4 cut(s) 246, 278, 281, 313
FatI CATG 3 cut(s) 173, 222, 365
FbaI TGATCA 1 cut(s) 214
FokI GGATG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 3 cut(s) 177, 226, 369
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 45, 97, 308
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 58, 350
Hpy188I TCNGA 5 cut(s) 44, 50, 181, 313, 393
Hpy188III TCNNGA 3 cut(s) 94, 131, 347
Hpy8I GTNNAC 2 cut(s) 58, 350
HpyAV CCTTC 2 cut(s) 322, 366
HpyCH4III ACNGT 2 cut(s) 55, 212
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 162, 318
Hsp92II CATG 3 cut(s) 177, 226, 369
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 78, 123, 214, 277
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 15, 114, 174, 255, 269, 366
LweI GCATC 1 cut(s) 237
MalI GATC 4 cut(s) 80, 125, 216, 279
MboI GATC 4 cut(s) 78, 123, 214, 277
MboII GAAGA 4 cut(s) 63, 73, 98, 254
MflI RGATCY 2 cut(s) 78, 123
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 6 cut(s) 97, 101, 130, 281, 313, 355
MseI TTAA 3 cut(s) 267, 294, 383
MslI CAYNNNNRTG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 4 cut(s) 78, 123, 214, 277
NlaIII CATG 3 cut(s) 177, 226, 369
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 45, 97, 308
PsuI RGATCY 2 cut(s) 78, 123
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 267, 294, 383
Sau3AI GATC 4 cut(s) 78, 123, 214, 277
SetI ASST 7 cut(s) 106, 141, 168, 273, 294, 339, 400
SfaNI GCATC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 168
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 55, 212
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 168
TfiI GAWTC 3 cut(s) 45, 97, 308
Tru1I TTAA 3 cut(s) 267, 294, 383
Tru9I TTAA 3 cut(s) 267, 294, 383
TspDTI ATGAA 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.