Rorug06G0053600

glutamine amidotransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
7415166 .. 7415465
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053600.1

Sequence Viewer

Length: 300 bp
ATGATGGTTAAGGTTTCTAATCTCATTTCTGAACCATTTCCTAGCTTTGATTTTCATCAACCAGAGGCTAAGTCATCTGTTGGCCAGGACGAGTATGCATTGGCCAAGGAAGGACTCCAGAAGATCTTTGATCGGGGGTTAGAAGCTTTAGCTGATGACCAAGTGCAAAAAGAGTTTCTCACTTATACAGCCATGCTTTTATCAGTTGATTCGTGCCCATCGCAGTTGAAGTCTAACCTTTCATCATTCACAGAAAACCTCCCAGAGGAAACCTCCACTTTTGTTCAAGCTAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

4.61

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 82, 102
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 229, 287
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 45, 146, 152, 290
AluI AGCT 4 cut(s) 45, 146, 152, 290
AoxI GGCC 2 cut(s) 82, 102
Asp700I GAANNNNTTC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 218
BalI TGGCCA 2 cut(s) 84, 104
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 218
BshFI GGCC 2 cut(s) 84, 104
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 2 cut(s) 84, 104
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 123, 130
BspANI GGCC 2 cut(s) 84, 104
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 123, 130
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 263
BstKTI GATC 2 cut(s) 126, 133
BstMBI GATC 2 cut(s) 123, 130
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 84, 104
BtgZI GCGATG 1 cut(s) 204
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 45, 68, 84, 104, 146, 152, 191, 290
CviKI_1 RGCY 8 cut(s) 45, 68, 84, 104, 146, 152, 191, 290
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 125, 132
DpnII GATC 2 cut(s) 123, 130
EaeI YGGCCR 2 cut(s) 82, 102
Eco130I CCWWGG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 96, 186, 194
FatI CATG 1 cut(s) 192
FspBI CTAG 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 84, 104
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 2 cut(s) 114, 209
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 98, 166
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 2 cut(s) 123, 130
LpnPI CCDG 5 cut(s) 71, 75, 98, 131, 276
MaeI CTAG 1 cut(s) 42
MalI GATC 2 cut(s) 125, 132
MboI GATC 2 cut(s) 123, 130
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 218
MlsI TGGCCA 2 cut(s) 84, 104
MluNI TGGCCA 2 cut(s) 84, 104
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 4 cut(s) 58, 259, 269, 283
Mox20I TGGCCA 2 cut(s) 84, 104
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 2 cut(s) 84, 104
MseI TTAA 1 cut(s) 9
Msp20I TGGCCA 2 cut(s) 84, 104
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 2 cut(s) 123, 130
NlaIII CATG 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 209
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 2 cut(s) 123, 130
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 218
SetI ASST 8 cut(s) 15, 47, 148, 154, 240, 261, 275, 292
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 105
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 44, 231
XagI CCTNNNNNAGG 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.