Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012575

Physical Location & Seq

Genomic Coordinates Forward (+)

4673304 .. 4677630

Gene Structure 4327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGGGAAGAAATTCGCAGTGCTTCTGTGCGCAGAGGACACGGAGTTTGTGAAAAAGACGTACGGGGGATATTTTGGGGTGTATCTGAGAATGCTGGCGGAGGAGGGGGAGGCTTGGGACTTGTACCGGGTGGCGTGCGGTGAGTTTCCGGAGGATGATGAGATTGAAAGCTACGATGGGTTTGTGATATCCGGAAGCAGCAGGGATGCCCACGGCACTGATGCCTGGATCTGCAGGCTCCTCTCCCTCCTCCAGAAATTGGATTCCATCAGGAAAAAAGTTCTCGGCATTTGCTTTGGTCATCAGATATTGAGCCGTGCATTGGGAGGAAAATCTGGCAGAGCCATCACAGGCTGGGATATCGGAATCCGAACCATCCACGTGTCATCATCTTCCAAGGCCTTATCCACTCTCAAAATTCCAGCTCTTCTCTCCATATATGAAATCCATCGAGATGAGGTGTGGGAACTGCCGCCTAAGGCTGAGTTAATTGCCTGGTCGGATAAGACTGGTGTGGAGATGTTTAAGTATGGAGATCACATGATGGGAATCCAAGGACACCCTGAGTACACCAAAGACATTCTTCTCAATCTTATCGATCACCTTGCCAAACTCGAATACATCTTGGACTCGGAAACTGAAGAATTGAAGGCCAAGGTGGAGGCATGTGAGCCAGACAGAGAGGCATGGAAGAGGGTTTGTAGAAGCTTTCTCAAGGGTGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATase

Protein Analysis

244

Amino Acids

27.37

Weight (kDa)

5.46

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g11460
malus_domestica	MD10G1055700.v1.1
prunus_persica	Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1 Prupe.8G072000_v2.0.a1
pyrus_communis	pycom05g04040 pycom10g04260
rosa_chinensis	RchiOBHm_Chr6g0270211
rosa_laevigata	RLG00000013808
rosa_multiflora	Rmu_co8416353.1_g000001 Rmu_sc0002817.1_g000002 Rmu_sc0002817.1_g000003 Rmu_sc0042204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198060
rosa_rugosa	Rorug06G0053600
rosa_samantha	Rh6AG172200 Rh6BG176500 Rh6CG172300 Rh6DG163500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccIII	TCCGGA	2 cut(s)	151, 194
AciI	CCGC	3 cut(s)	101, 141, 476
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	14, 420
AcuI	CTGAAG	1 cut(s)	663
AcvI	CACGTG	1 cut(s)	385
AfaI	GTAC	3 cut(s)	65, 128, 572
AfiI	CCNNNNNNNGG	2 cut(s)	262, 325
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	170, 652
AjnI	CCWGG	2 cut(s)	227, 497
AluBI	AGCT	3 cut(s)	174, 428, 711
AluI	AGCT	3 cut(s)	174, 428, 711
AlwI	GGATC	1 cut(s)	239
Aor13HI	TCCGGA	2 cut(s)	151, 194
AoxI	GGCC	2 cut(s)	402, 654
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	14, 420
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	155, 596
AxyI	CCTNAGG	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	6 cut(s)	173, 278, 356, 386, 459, 541
BceAI	ACGGC	2 cut(s)	232, 303
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	229, 499
BcnI	CCSGG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	2 cut(s)	202, 476
BlsI	GCNGC	2 cut(s)	203, 477
Bme1390I	CCNGG	3 cut(s)	131, 229, 499
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	131, 229, 499
BmsI	GCATC	2 cut(s)	199, 214
BpmI	CTGGAG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	551
BsaJI	CCNNGG	4 cut(s)	214, 399, 556, 657
BsaWI	WCCGGW	2 cut(s)	151, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 325
Bse1I	ACTGG	1 cut(s)	517
Bse21I	CCTNAGG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	551
BseAI	TCCGGA	2 cut(s)	151, 194
BseBI	CCWGG	2 cut(s)	229, 499
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	4 cut(s)	214, 399, 556, 657
BseGI	GGATG	3 cut(s)	163, 214, 378
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	2 cut(s)	262, 325
BseMII	CTCAG	3 cut(s)	80, 477, 558
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	3 cut(s)	119, 233, 242
BseXI	GCAGC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	357
BshFI	GGCC	2 cut(s)	404, 656
BshVI	ATCGAT	1 cut(s)	600
BsiSI	CCGG	3 cut(s)	130, 152, 195
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	262, 325
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	404, 656
Bsp13I	TCCGGA	2 cut(s)	151, 194
Bsp143I	GATC	3 cut(s)	231, 538, 601
BspACI	CCGC	3 cut(s)	101, 141, 476
BspANI	GGCC	2 cut(s)	404, 656
BspCNI	CTCAG	3 cut(s)	81, 478, 559
BspDI	ATCGAT	1 cut(s)	600
BspEI	TCCGGA	2 cut(s)	151, 194
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	239
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	214, 399, 556, 657
BssMI	GATC	3 cut(s)	231, 538, 601
BssT1I	CCWWGG	3 cut(s)	399, 556, 657
Bst2UI	CCWGG	2 cut(s)	229, 499
Bst6I	CTCTTC	2 cut(s)	435, 689
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	99, 139, 239
BstDEI	CTNAG	4 cut(s)	89, 480, 486, 567
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	3 cut(s)	163, 214, 378
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	234, 541, 604
BstMBI	GATC	3 cut(s)	231, 538, 601
BstNI	CCWGG	2 cut(s)	229, 499
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	3 cut(s)	129, 227, 497
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	404, 656
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	163, 214, 378
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 219
Cac8I	GCNNGC	3 cut(s)	99, 139, 239
CfoI	GCGC	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	3 cut(s)	64, 127, 571
CviAII	CATG	3 cut(s)	544, 669, 690
CviQI	GTAC	3 cut(s)	64, 127, 571
DdeI	CTNAG	4 cut(s)	89, 480, 486, 567
DpnI	GATC	3 cut(s)	233, 540, 603
DpnII	GATC	3 cut(s)	231, 538, 601
Eam1104I	CTCTTC	2 cut(s)	435, 689
EarI	CTCTTC	2 cut(s)	435, 689
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	3 cut(s)	399, 556, 657
Eco147I	AGGCCT	1 cut(s)	404
Eco32I	GATATC	2 cut(s)	192, 364
Eco57I	CTGAAG	1 cut(s)	663
Eco72I	CACGTG	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	227, 497
EcoRV	GATATC	2 cut(s)	192, 364
EcoT14I	CCWWGG	3 cut(s)	399, 556, 657
ErhI	CCWWGG	3 cut(s)	399, 556, 657
FaeI	CATG	3 cut(s)	547, 672, 693
FaiI	YATR	8 cut(s)	440, 442, 444, 534, 545, 670, 691, 730
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	543, 668, 689
Fnu4HI	GCNGC	2 cut(s)	202, 476
FokI	GGATG	3 cut(s)	170, 221, 365
Fsp4HI	GCNGC	2 cut(s)	202, 476
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	202, 476
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	404, 656
HapII	CCGG	3 cut(s)	130, 152, 195
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	547, 672, 693
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	4 cut(s)	266, 369, 552, 632
HpaII	CCGG	3 cut(s)	130, 152, 195
HphI	GGTGA	2 cut(s)	155, 596
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	6 cut(s)	90, 309, 368, 374, 505, 637
Hpy188III	TCNNGA	5 cut(s)	152, 195, 256, 274, 455
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	62, 384
HpyCH4V	TGCA	2 cut(s)	237, 323
HpyF3I	CTNAG	4 cut(s)	89, 480, 486, 567
HpySE526I	ACGT	2 cut(s)	62, 384
Hsp92II	CATG	3 cut(s)	547, 672, 693
HspAI	GCGC	1 cut(s)	33
Kpn2I	TCCGGA	2 cut(s)	151, 194
Kzo9I	GATC	3 cut(s)	231, 538, 601
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	2 cut(s)	199, 214
MaeII	ACGT	2 cut(s)	62, 384
MalI	GATC	3 cut(s)	233, 540, 603
MboI	GATC	3 cut(s)	231, 538, 601
MboII	GAAGA	6 cut(s)	22, 387, 422, 578, 656, 706
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	6 cut(s)	14, 260, 420, 492, 647, 725
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	1 cut(s)	483
MroI	TCCGGA	2 cut(s)	151, 194
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	491, 528
MslI	CAYNNNNRTG	2 cut(s)	383, 456
MspI	CCGG	3 cut(s)	130, 152, 195
MspR9I	CCNGG	3 cut(s)	131, 229, 499
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	229, 499
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	231, 538, 601
NlaIII	CATG	3 cut(s)	547, 672, 693
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	267
NsbI	TGCGCA	1 cut(s)	34
NspI	RCATGY	1 cut(s)	672
PceI	AGGCCT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	266, 369, 552
Pfl23II	CGTACG	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	203, 477
PleI	GAGTC	1 cut(s)	626
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	626
Ppu21I	YACGTR	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	227, 497
PspCI	CACGTG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	2 cut(s)	227, 497
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	3 cut(s)	65, 128, 572
RsaNI	GTAC	3 cut(s)	64, 127, 571
RseI	CAYNNNNRTG	2 cut(s)	383, 456
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	491, 528
SatI	GCNGC	2 cut(s)	202, 476
Sau3AI	GATC	3 cut(s)	231, 538, 601
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	3 cut(s)	131, 229, 499
SetI	ASST	8 cut(s)	65, 176, 387, 430, 465, 609, 663, 713
SfaNI	GCATC	2 cut(s)	199, 214
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	383, 456
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	6 cut(s)	14, 260, 420, 492, 647, 725
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	3 cut(s)	101, 141, 476
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	129, 227, 497
StyI	CCWWGG	3 cut(s)	399, 556, 657
TaiI	ACGT	2 cut(s)	65, 387
TaqI	TCGA	3 cut(s)	454, 600, 618
TasI	AATT	6 cut(s)	14, 260, 420, 492, 647, 725
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	3 cut(s)	266, 369, 552
Tru1I	TTAA	2 cut(s)	491, 528
Tru9I	TTAA	2 cut(s)	491, 528
TscAI	CASTG	2 cut(s)	27, 226
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	27, 226
Van91I	CCANNNNNTGG	1 cut(s)	262
XapI	RAATTY	2 cut(s)	14, 420
XceI	RCATGY	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.