Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015545

Physical Location & Seq

Genomic Coordinates Forward (+)

17920145 .. 17923257

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAACTCGGCAGTTCTGAGAGAGTGGTTCGCCCGAGTTGATTCGGCCAATACGGGAAGCATCACTGCACCGCAGCTCAAGAATGCTCTTGCTGTTGGAAACCTCGACTTCCCTATCTCGGTTGTTCAGCAAATGATCAGGATGTATGATTTTGACCGGAATGGGACGATGAGCTTTGAAGAGTTTGTGGCGCTCAACAAGTTCCTTCTCAAGGTTCAACAAGCCTTCTCAGACCGAGAGAGGGGTCGTGGCTATATTGTTCCTGATGATGTGCATGAGGCATTGGTAAAAATTGGTTTCTCGCTGGACTCTCCCGCTTTCTACACAGTCTGTGAGAGCTTTGATAAAAAGAAGAAAGGAATGTTCCGACTAGATGACTTCATATCTCTTTGTATATTTTTGCAGTCTGCTCGTAATCTGTTTAATTCATTTGATACAGCTAAACAAGGCAGAGTGTCTCTGGATCTCAACCAGTTTGTCTTTTGCACTGCCAATTGCAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7 EF-hand_8

Protein Analysis

170

Amino Acids

19.24

Weight (kDa)

6.58

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16570
malus_domestica	MD10G1139000.v1.1
prunus_persica	Prupe.8G177800_v2.0.a1
pyrus_communis	pycom10g11820
rosa_chinensis	RchiOBHm_Chr6g0280641
rosa_laevigata	RLG00000013041
rosa_multiflora	Rmu_sc0000976.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187850
rosa_rugosa	Rorug06G0133300 Rorug06G0133300 Rorug06G0133300
rosa_samantha	Rh6AG245700 Rh6BG248100 Rh6CG249500 Rh6DG240800
rosa_wichuraiana	Rw6G021270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 318
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	121, 214, 244
AgsI	TTSAA	2 cut(s)	182, 221
AluBI	AGCT	4 cut(s)	79, 177, 342, 443
AluI	AGCT	4 cut(s)	79, 177, 342, 443
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	65, 197
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 214, 244
Bse1I	ACTGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	121, 214, 244
BseMII	CTCAG	2 cut(s)	11, 246
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	121, 214, 244
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	138, 466
BspACI	CCGC	2 cut(s)	74, 318
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	12, 245
BspPI	GGATC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	138, 466
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	20, 232
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	141, 469
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	2 cut(s)	138, 466
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	2 cut(s)	66, 489
BtsIMutI	CAGTG	2 cut(s)	66, 489
CfoI	GCGC	1 cut(s)	196
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	7 cut(s)	50, 79, 177, 227, 255, 342, 443
CviKI_1	RGCY	7 cut(s)	50, 79, 177, 227, 255, 342, 443
DdeI	CTNAG	2 cut(s)	20, 232
DpnI	GATC	2 cut(s)	140, 468
DpnII	GATC	2 cut(s)	138, 466
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	281
FaiI	YATR	6 cut(s)	150, 258, 279, 386, 398, 508
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	44, 311
HpaII	CCGG	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	21, 235, 371
Hpy188III	TCNNGA	4 cut(s)	82, 142, 266, 464
HpyAV	CCTTC	2 cut(s)	218, 238
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	71, 277, 406, 489, 501
HpyF3I	CTNAG	2 cut(s)	20, 232
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 466
LpnPI	CCDG	6 cut(s)	127, 173, 279, 293, 449, 488
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	374
MalI	GATC	2 cut(s)	140, 468
MboI	GATC	2 cut(s)	138, 466
MboII	GAAGA	2 cut(s)	194, 367
MfeI	CAATTG	1 cut(s)	496
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	3 cut(s)	294, 427, 496
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	79, 394
MnlI	CCTC	3 cut(s)	116, 237, 274
MseI	TTAA	1 cut(s)	426
MspI	CCGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	91
NdeII	GATC	2 cut(s)	138, 466
NlaIII	CATG	1 cut(s)	281
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	138, 466
SchI	GAGTC	1 cut(s)	305
SetI	ASST	6 cut(s)	81, 108, 179, 219, 344, 445
SfaNI	GCATC	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	80, 212
SmoI	CTYRAG	2 cut(s)	80, 212
Sse9I	AATT	3 cut(s)	294, 427, 496
SsiI	CCGC	2 cut(s)	74, 318
SspMI	CTAG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	108
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	294, 427, 496
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	2 cut(s)	73, 496
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	373, 420
TspRI	CASTG	2 cut(s)	73, 496
XagI	CCTNNNNNAGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.