Rorug06G0133300

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
18858140 .. 18860979
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0133300.1

Sequence Viewer

Length: 573 bp
ATGAGCTTGCTTCTTCTCATAGTGCTCCAGACATTTATGCCTTGGCGTTTCAGAGAGATGGTTTGGGGTTCCATTTTTTCATTAATATTGCATTGGCATACAAGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGACTCGATTCACCAGTTCTATCATCAAGTTCTCATCTCCACTTGGATCTGTGAAGACTCTCTCCAAGTCTTTTGGCTTGAAAGCATCTGCCTCTGCCCGAACATCAATGGCAGTATACAAGGTTAAGCTGATTGGGCCAGACGGTGAGGAGAACGAGTTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAACGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTGCAGTGGACCAGTCGGATGGTTCCTTCCTTGATGACAACCAAATGAAGGAGGGTTATGTGCTGACCTGTGTCTCGTATCCAACTTCAGACTGTGTGATCCACACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

20.86

Weight (kDa)

5.78

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 103 - 176 7.3e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 285
AclI AACGTT 1 cut(s) 135
AclWI GGATC 2 cut(s) 223, 535
AcuI CTGAAG 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 4 cut(s) 6, 298, 365, 385
AluI AGCT 4 cut(s) 6, 298, 365, 385
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 2 cut(s) 223, 535
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 385
AseI ATTAAT 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 305, 451
AsuHPI GGTGA 2 cut(s) 172, 326
AvaII GGWCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 372
BccI CCATC 3 cut(s) 52, 427, 455
BciVI GTATCC 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 531
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 305, 451
BmiI GGNNCC 2 cut(s) 70, 466
BmsI GCATC 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 230
BpmI CTGGAG 2 cut(s) 11, 321
BsaJI CCNNGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 183, 454
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 3 cut(s) 158, 169, 357
BseNI ACTGG 2 cut(s) 183, 454
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 372
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 2 cut(s) 444, 465
BshFI GGCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 520
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 215, 540
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 3 cut(s) 157, 168, 358
BspLI GGNNCC 2 cut(s) 70, 466
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 2 cut(s) 223, 535
BsrI ACTGG 2 cut(s) 183, 454
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 215, 540
BssNAI GTATAC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 41
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 4 cut(s) 130, 314, 536, 567
BstC8I GCNNGC 3 cut(s) 8, 152, 412
BstDEI CTNAG 4 cut(s) 144, 155, 168, 366
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 218, 543
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 2 cut(s) 215, 540
BstMWI GCNNNNNNNGC 2 cut(s) 304, 371
BstNSI RCATGY 3 cut(s) 115, 154, 414
BstPAI GACNNNNGTC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 286
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 152, 453
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 3 cut(s) 8, 152, 412
Cfr13I GGNCC 2 cut(s) 305, 451
CseI GACGC 1 cut(s) 341
CviAII CATG 4 cut(s) 112, 121, 151, 411
CviJI RGCY 7 cut(s) 6, 246, 298, 307, 365, 385, 404
CviKI_1 RGCY 7 cut(s) 6, 246, 298, 307, 365, 385, 404
DdeI CTNAG 4 cut(s) 144, 155, 168, 366
DpnI GATC 2 cut(s) 217, 542
DpnII GATC 2 cut(s) 215, 540
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 4 cut(s) 115, 124, 154, 414
FaiI YATR 9 cut(s) 20, 38, 99, 113, 122, 152, 286, 412, 501
FatI CATG 4 cut(s) 111, 120, 150, 410
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 386
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 2 cut(s) 11, 321
HaeIII GGCC 1 cut(s) 307
HgaI GACGC 1 cut(s) 341
Hin1II CATG 4 cut(s) 115, 124, 154, 414
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 5 cut(s) 172, 177, 226, 344, 359
HphI GGTGA 2 cut(s) 172, 326
Hpy166II GTNNAC 5 cut(s) 117, 133, 286, 451, 563
Hpy188I TCNGA 4 cut(s) 53, 158, 460, 532
Hpy188III TCNNGA 2 cut(s) 28, 338
Hpy8I GTNNAC 5 cut(s) 117, 133, 286, 451, 563
HpyAV CCTTC 2 cut(s) 478, 484
HpyCH4III ACNGT 4 cut(s) 130, 314, 536, 567
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 91, 150, 164, 399, 425, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 371
HpyF3I CTNAG 4 cut(s) 144, 155, 168, 366
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 115, 124, 154, 414
Kzo9I GATC 2 cut(s) 215, 540
LmnI GCTCC 3 cut(s) 30, 340, 419
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 1 cut(s) 263
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 217, 542
MboI GATC 2 cut(s) 215, 540
MboII GAAGA 2 cut(s) 5, 235
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 3 cut(s) 166, 220, 338
MmeI TCCRAC 2 cut(s) 438, 548
MnlI CCTC 4 cut(s) 151, 271, 310, 487
MseI TTAA 2 cut(s) 83, 294
MspA1I CMGCKG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 304, 371
NdeII GATC 2 cut(s) 215, 540
NlaIII CATG 4 cut(s) 115, 124, 154, 414
NlaIV GGNNCC 2 cut(s) 70, 466
NspI RCATGY 3 cut(s) 115, 154, 414
PaeI GCATGC 2 cut(s) 154, 414
PaqCI CACCTGC 1 cut(s) 431
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 2 cut(s) 177, 359
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 3 cut(s) 166, 220, 338
PpsI GAGTC 3 cut(s) 166, 220, 338
PscI ACATGT 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 512
PshBI ATTAAT 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 70, 466
PspPI GGNCC 2 cut(s) 305, 451
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 83, 294
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 2 cut(s) 215, 540
Sau96I GGNCC 2 cut(s) 305, 451
SchI GAGTC 3 cut(s) 166, 220, 338
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 263
SinI GGWCC 1 cut(s) 451
SphI GCATGC 2 cut(s) 154, 414
SspI AATATT 1 cut(s) 87
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 130, 314, 536, 567
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 175
TfiI GAWTC 2 cut(s) 177, 359
Tru1I TTAA 2 cut(s) 83, 294
Tru9I TTAA 2 cut(s) 83, 294
TscAI CASTG 2 cut(s) 152, 453
TseI GCWGC 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 69, 503
TspRI CASTG 2 cut(s) 152, 453
VpaK11BI GGWCC 1 cut(s) 451
VspI ATTAAT 1 cut(s) 83
XceI RCATGY 3 cut(s) 115, 154, 414
XmiI GTMKAC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.