Rroxscaffold_6G00388740

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000144
Physical Location & Seq
Reverse (-)
1856680 .. 1861867
5188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388740.1

Sequence Viewer

Length: 879 bp
ATGACTCTCTCGAGCTTAGACCTACAAACCCATCTCTTTCGAGCGAATGACTTCAATTTCTTAGGCGCCTCTTCCTTTCCCTTCCTCACCTTCACCCTCTTCTCCCTCGTTGTCACCGTCCCGAACGACCGAGCCTTCTTCGGTTTTGGTTTTTCTCCGCCTCCCGTTCCATCTCTCTCTCCCGCGGCTCACATTCCGCCATCAAAGCTTCCCAAGAAATGCATTGGCTCTTGCATTGAGTCCTGTCGTCGGGGCTCGGTTGATCCGGATGGAGCATTGAGTGATGTGCGGAATTTGGATAGCTTTTACTTCTTTCTTCGAGATAAGCTTCTCGATTGGTTCATGTCCAACGGTGACACACGCACGAGTATCCGGAGAATGTGGGATCCCGTTGCGTATGCTCTTGGGTTCACCGATTTCACAAACCTTATATTTTCCAAACATTGTAAATGTTCATCTCTTCAAGGGATGCTCAACGGAATTCATCAATCGATTGTATGTCCAAGATTTTTCGTGTACCGCGGTAAAGCATCTGTTTTCCTTATCGAATGGCGAACGGCTTTGTGTAGACCTAGAGACAAAAGATGGAGTGTCTACCAAGTATTTGAAGAAAATGAAAATCTTGTCGAGAGAGTGAACAGAATATTGTTTTCCACCACCGGCGTGCTATATGCCTTGGTTACGGGTAACCGCAATGGTCGTGGTGTTGATGCAGACCGCACTTTAAAGTTCGGAGATGAGGCGGTGAAATTGAAGCTGATCTATGACATAGAGGAGTGGTGGATTGATGCAGGGGTTGATCCGGTAGGGCTTTTGTGCATGTCATACTTGTTGGAATCAACAAACAACGAAATTTTATTGAAACATAAGCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

292

Amino Acids

33.22

Weight (kDa)

8.39

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 2 cut(s) 568, 594
AccII CGCG 2 cut(s) 185, 522
AccIII TCCGGA 2 cut(s) 265, 372
AclWI GGATC 4 cut(s) 257, 380, 393, 794
AcsI RAATTY 3 cut(s) 292, 480, 852
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 5 cut(s) 55, 464, 608, 754, 862
AleI CACNNNNGTG 1 cut(s) 662
AluBI AGCT 5 cut(s) 15, 208, 303, 328, 757
AluI AGCT 5 cut(s) 15, 208, 303, 328, 757
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 4 cut(s) 257, 380, 393, 794
Ama87I CYCGRG 1 cut(s) 10
Aor13HI TCCGGA 2 cut(s) 265, 372
ApoI RAATTY 3 cut(s) 292, 480, 852
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 6 cut(s) 79, 85, 106, 365, 403, 757
AvaI CYCGRG 1 cut(s) 10
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 257
BauI CACGAG 1 cut(s) 364
BccI CCATC 5 cut(s) 39, 178, 208, 263, 579
BceAI ACGGC 1 cut(s) 573
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 67, 387
BmsI GCATC 4 cut(s) 459, 539, 700, 778
Bsa29I ATCGAT 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 183, 520, 675
BsaWI WCCGGW 3 cut(s) 265, 372, 802
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 700
BseAI TCCGGA 2 cut(s) 265, 372
BseCI ATCGAT 1 cut(s) 491
BseDI CCNNGG 3 cut(s) 183, 520, 675
BseGI GGATG 2 cut(s) 274, 474
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 788
Bsh1236I CGCG 2 cut(s) 185, 522
Bsh1285I CGRYCG 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 4 cut(s) 266, 373, 660, 803
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 257
Bsp13I TCCGGA 2 cut(s) 265, 372
Bsp143I GATC 4 cut(s) 262, 385, 759, 799
BspDI ATCGAT 1 cut(s) 491
BspEI TCCGGA 2 cut(s) 265, 372
BspFNI CGCG 2 cut(s) 185, 522
BspLI GGNNCC 2 cut(s) 67, 387
BspPI GGATC 4 cut(s) 257, 380, 393, 794
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 3 cut(s) 183, 520, 675
BssMI GATC 4 cut(s) 262, 385, 759, 799
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 118, 353
Bst6I CTCTTC 3 cut(s) 76, 104, 465
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 665
BstDEI CTNAG 2 cut(s) 16, 61
BstDSI CCRYGG 2 cut(s) 183, 520
BstEII GGTNACC 1 cut(s) 686
BstF5I GGATG 2 cut(s) 274, 474
BstFNI CGCG 2 cut(s) 185, 522
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 265, 388, 762, 802
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 4 cut(s) 262, 385, 759, 799
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 823
BstPI GGTNACC 1 cut(s) 686
BstUI CGCG 2 cut(s) 185, 522
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 491
BsuI GTATCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 491
BtgI CCRYGG 2 cut(s) 183, 520
BtsCI GGATG 2 cut(s) 274, 474
Cac8I GCNNGC 1 cut(s) 665
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 659
Cfr42I CCGCGG 2 cut(s) 186, 523
ClaI ATCGAT 1 cut(s) 491
Csp6I GTAC 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 2 cut(s) 343, 820
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 2 cut(s) 16, 61
DinI GGCGCC 1 cut(s) 67
DpnI GATC 4 cut(s) 264, 387, 761, 801
DpnII GATC 4 cut(s) 262, 385, 759, 799
DraI TTTAAA 1 cut(s) 726
Eam1104I CTCTTC 3 cut(s) 76, 104, 465
EarI CTCTTC 3 cut(s) 76, 104, 465
EciI GGCGGA 2 cut(s) 147, 186
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 686
EcoO65I GGTNACC 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 257
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 2 cut(s) 346, 823
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 342, 819
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 2 cut(s) 568, 594
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 281, 481
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 4 cut(s) 266, 373, 660, 803
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 346, 823
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 206, 326
HinfI GANTC 3 cut(s) 4, 239, 836
HpaII CCGG 4 cut(s) 266, 373, 660, 803
HphI GGTGA 6 cut(s) 79, 85, 106, 365, 403, 757
Hpy166II GTNNAC 5 cut(s) 411, 517, 569, 595, 637
Hpy188I TCNGA 1 cut(s) 734
Hpy188III TCNNGA 7 cut(s) 10, 121, 266, 320, 332, 373, 628
Hpy8I GTNNAC 5 cut(s) 411, 517, 569, 595, 637
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 91, 100, 145
HpyCH4III ACNGT 2 cut(s) 118, 353
HpyCH4V TGCA 5 cut(s) 222, 234, 713, 791, 819
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 2 cut(s) 16, 61
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 346, 823
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 265, 372
KspI CCGCGG 2 cut(s) 186, 523
Kzo9I GATC 4 cut(s) 262, 385, 759, 799
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 256, 279, 386, 673, 777, 816
LweI GCATC 4 cut(s) 459, 539, 700, 778
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 112, 353, 679, 686
MalI GATC 4 cut(s) 264, 387, 761, 801
MboI GATC 4 cut(s) 262, 385, 759, 799
MboII GAAGA 6 cut(s) 63, 91, 130, 308, 452, 620
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 5 cut(s) 55, 292, 480, 749, 852
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 372, 813
MnlI CCTC 7 cut(s) 79, 95, 107, 116, 171, 733, 766
Mph1103I ATGCAT 1 cut(s) 224
MroI TCCGGA 2 cut(s) 265, 372
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 2 cut(s) 185, 522
MspI CCGG 4 cut(s) 266, 373, 660, 803
MvnI CGCG 2 cut(s) 185, 522
MwoI GCNNNNNNNGC 1 cut(s) 205
NarI GGCGCC 1 cut(s) 66
NdeII GATC 4 cut(s) 262, 385, 759, 799
NlaIII CATG 2 cut(s) 346, 823
NlaIV GGNNCC 2 cut(s) 67, 387
NmuCI GTSAC 2 cut(s) 112, 353
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 823
OliI CACNNNNGTG 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 836
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 67, 387
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 662
SacII CCGCGG 2 cut(s) 186, 523
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 262, 385, 759, 799
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 257
SetI ASST 9 cut(s) 17, 24, 92, 210, 305, 330, 429, 574, 759
SfaNI GCATC 4 cut(s) 459, 539, 700, 778
SfoI GGCGCC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 10
Sfr303I CCGCGG 2 cut(s) 186, 523
SgrAI CRCCGGYG 1 cut(s) 659
SgrBI CCGCGG 2 cut(s) 186, 523
SlaI CTCGAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 5 cut(s) 55, 292, 480, 749, 852
SspDI GGCGCC 1 cut(s) 65
SspI AATATT 1 cut(s) 645
SspMI CTAG 1 cut(s) 573
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 118, 353
TaqI TCGA 7 cut(s) 11, 40, 319, 333, 491, 546, 627
TaqII GACCGA 1 cut(s) 144
TasI AATT 5 cut(s) 55, 292, 480, 749, 852
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TseFI GTSAC 2 cut(s) 112, 353
Tsp45I GTSAC 2 cut(s) 112, 353
TspDTI ATGAA 4 cut(s) 331, 444, 473, 630
TspGWI ACGGA 1 cut(s) 492
XapI RAATTY 3 cut(s) 292, 480, 852
XceI RCATGY 1 cut(s) 823
XhoI CTCGAG 1 cut(s) 10
XmiI GTMKAC 2 cut(s) 568, 594
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 573
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.