Protein of unknown function (DUF295)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 212, 2964 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| Acc36I | ACCTGC | 1 cut(s) | 1523 |
| AccB1I | GGYRCC | 1 cut(s) | 1924 |
| AccI | GTMKAC | 2 cut(s) | 3051, 3358 |
| AccIII | TCCGGA | 2 cut(s) | 62, 809 |
| AciI | CCGC | 2 cut(s) | 1328, 2380 |
| AclWI | GGATC | 5 cut(s) | 463, 960, 1779, 1792, 1811 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1614, 2082 |
| AcsI | RAATTY | 7 cut(s) | 11, 1772, 2077, 2201, 2271, 2575, 2798 |
| AcuI | CTGAAG | 2 cut(s) | 413, 1299 |
| AcyI | GRCGYC | 1 cut(s) | 1925 |
| AfaI | GTAC | 6 cut(s) | 113, 2254, 2432, 3112, 3202, 3322 |
| AflIII | ACRYGT | 2 cut(s) | 474, 3373 |
| AjnI | CCWGG | 8 cut(s) | 181, 911, 1174, 1465, 1611, 1787, 1900, 2587 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2260, 2292, 2853, 2885 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 4 cut(s) | 1088, 1697, 1735, 3369 |
| AlwI | GGATC | 5 cut(s) | 463, 960, 1779, 1792, 1811 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 92, 353 |
| Aor13HI | TCCGGA | 2 cut(s) | 62, 809 |
| ApeKI | GCWGC | 6 cut(s) | 533, 830, 1331, 1671, 2627, 2929 |
| ApoI | RAATTY | 7 cut(s) | 11, 1772, 2077, 2201, 2271, 2575, 2798 |
| AseI | ATTAAT | 1 cut(s) | 2694 |
| AspA2I | CCTAGG | 1 cut(s) | 2323 |
| AspLEI | GCGC | 2 cut(s) | 1927, 2126 |
| AspS9I | GGNCC | 3 cut(s) | 350, 1030, 2710 |
| AsuC2I | CCSGG | 1 cut(s) | 1565 |
| AsuHPI | GGTGA | 8 cut(s) | 892, 1255, 1277, 1931, 2558, 2572, 2659, 2782 |
| AsuII | TTCGAA | 1 cut(s) | 848 |
| AsuNHI | GCTAGC | 1 cut(s) | 317 |
| AvaII | GGWCC | 1 cut(s) | 1030 |
| AvrII | CCTAGG | 1 cut(s) | 2323 |
| AxyI | CCTNAGG | 2 cut(s) | 2035, 2307 |
| BalI | TGGCCA | 2 cut(s) | 5, 2084 |
| BamHI | GGATCC | 1 cut(s) | 1784 |
| BanI | GGYRCC | 1 cut(s) | 1924 |
| BanII | GRGCYC | 1 cut(s) | 237 |
| BbsI | GAAGAC | 4 cut(s) | 1251, 1252, 2054, 2288 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 6 cut(s) | 520, 842, 1318, 1683, 2614, 2916 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3140, 3174 |
| BciT130I | CCWGG | 8 cut(s) | 183, 913, 1176, 1467, 1613, 1789, 1902, 2589 |
| BciVI | GTATCC | 2 cut(s) | 665, 1173 |
| BcnI | CCSGG | 1 cut(s) | 1565 |
| BcoDI | GTCTC | 4 cut(s) | 1088, 1697, 1735, 3369 |
| BfaI | CTAG | 7 cut(s) | 72, 318, 1931, 2258, 2324, 3038, 3195 |
| BfmI | CTRYAG | 3 cut(s) | 249, 524, 956 |
| BfoI | RGCGCY | 1 cut(s) | 1928 |
| BfuAI | ACCTGC | 1 cut(s) | 1523 |
| BfuI | GTATCC | 2 cut(s) | 665, 1173 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2717 |
| BglII | AGATCT | 1 cut(s) | 3400 |
| BisI | GCNGC | 7 cut(s) | 534, 831, 1329, 1332, 1672, 2628, 2930 |
| BlnI | CCTAGG | 1 cut(s) | 2323 |
| BlsI | GCNGC | 7 cut(s) | 535, 832, 1330, 1333, 1673, 2629, 2931 |
| BmcAI | AGTACT | 1 cut(s) | 2432 |
| Bme1390I | CCNGG | 9 cut(s) | 183, 913, 1176, 1467, 1565, 1613, 1789, 1902, 2589 |
| Bme18I | GGWCC | 1 cut(s) | 1030 |
| BmgT120I | GGNCC | 3 cut(s) | 350, 1030, 2710 |
| BmiI | GGNNCC | 4 cut(s) | 446, 1018, 1786, 1926 |
| BmrFI | CCNGG | 9 cut(s) | 183, 913, 1176, 1467, 1565, 1613, 1789, 1902, 2589 |
| BmsI | GCATC | 8 cut(s) | 438, 588, 758, 773, 829, 955, 1093, 1825 |
| BmtI | GCTAGC | 1 cut(s) | 321 |
| BpiI | GAAGAC | 4 cut(s) | 1251, 1252, 2054, 2288 |
| BpmI | CTGGAG | 2 cut(s) | 83, 2610 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2922, 2952 |
| Bpu14I | TTCGAA | 1 cut(s) | 848 |
| BpuEI | CTTGAG | 2 cut(s) | 55, 3425 |
| BpuMI | CCSGG | 1 cut(s) | 1565 |
| BsaAI | YACGTR | 1 cut(s) | 477 |
| BsaBI | GATNNNNATC | 1 cut(s) | 129 |
| BsaHI | GRCGYC | 1 cut(s) | 1925 |
| BsaJI | CCNNGG | 7 cut(s) | 787, 912, 1175, 1563, 1821, 1901, 2323 |
| BsaWI | WCCGGW | 3 cut(s) | 62, 809, 902 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1710, 1740, 2148, 2178 |
| Bse1I | ACTGG | 3 cut(s) | 954, 1368, 1431 |
| Bse21I | CCTNAGG | 2 cut(s) | 2035, 2307 |
| Bse3DI | GCAATG | 5 cut(s) | 328, 821, 1681, 2364, 2562 |
| Bse8I | GATNNNNATC | 1 cut(s) | 129 |
| BseAI | TCCGGA | 2 cut(s) | 62, 809 |
| BseBI | CCWGG | 8 cut(s) | 183, 913, 1176, 1467, 1613, 1789, 1902, 2589 |
| BseDI | CCNNGG | 7 cut(s) | 787, 912, 1175, 1563, 1821, 1901, 2323 |
| BseGI | GGATG | 6 cut(s) | 274, 871, 1108, 1556, 1840, 2535 |
| BseJI | GATNNNNATC | 1 cut(s) | 129 |
| BseMI | GCAATG | 5 cut(s) | 328, 821, 1681, 2364, 2562 |
| BseMII | CTCAG | 6 cut(s) | 254, 345, 573, 2049, 2966, 3171 |
| BseNI | ACTGG | 3 cut(s) | 954, 1368, 1431 |
| BseRI | GAGGAG | 2 cut(s) | 2506, 3351 |
| BseXI | GCAGC | 6 cut(s) | 520, 842, 1318, 1683, 2614, 2916 |
| BseYI | CCCAGC | 2 cut(s) | 1070, 1520 |
| BshNI | GGYRCC | 1 cut(s) | 1924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiSI | CCGG | 5 cut(s) | 63, 810, 903, 1565, 2708 |
| BslFI | GGGAC | 3 cut(s) | 1087, 2147, 2525 |
| BsmAI | GTCTC | 4 cut(s) | 1088, 1697, 1735, 3369 |
| BsmFI | GGGAC | 3 cut(s) | 1087, 2147, 2525 |
| Bsp119I | TTCGAA | 1 cut(s) | 848 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp13I | TCCGGA | 2 cut(s) | 62, 809 |
| Bsp1407I | TGTACA | 1 cut(s) | 111 |
| Bsp143I | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| Bsp19I | CCATGG | 1 cut(s) | 1821 |
| BspACI | CCGC | 2 cut(s) | 1328, 2380 |
| BspCNI | CTCAG | 6 cut(s) | 253, 346, 574, 2048, 2965, 3172 |
| BspEI | TCCGGA | 2 cut(s) | 62, 809 |
| BspHI | TCATGA | 1 cut(s) | 622 |
| BspLI | GGNNCC | 4 cut(s) | 446, 1018, 1786, 1926 |
| BspMAI | CTGCAG | 3 cut(s) | 253, 528, 960 |
| BspMI | ACCTGC | 1 cut(s) | 1523 |
| BspOI | GCTAGC | 1 cut(s) | 321 |
| BspPI | GGATC | 5 cut(s) | 463, 960, 1779, 1792, 1811 |
| BspQI | GCTCTTC | 1 cut(s) | 545 |
| BspT104I | TTCGAA | 1 cut(s) | 848 |
| BspT107I | GGYRCC | 1 cut(s) | 1924 |
| BsrDI | GCAATG | 5 cut(s) | 328, 821, 1681, 2364, 2562 |
| BsrGI | TGTACA | 1 cut(s) | 111 |
| BsrI | ACTGG | 3 cut(s) | 954, 1368, 1431 |
| BssECI | CCNNGG | 7 cut(s) | 787, 912, 1175, 1563, 1821, 1901, 2323 |
| BssMI | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| BssNI | GRCGYC | 1 cut(s) | 1925 |
| BssT1I | CCWWGG | 3 cut(s) | 787, 1821, 2323 |
| Bst2UI | CCWGG | 8 cut(s) | 183, 913, 1176, 1467, 1613, 1789, 1902, 2589 |
| Bst6I | CTCTTC | 3 cut(s) | 181, 545, 1318 |
| BstACI | GRCGYC | 1 cut(s) | 1925 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 839 |
| BstAUI | TGTACA | 1 cut(s) | 111 |
| BstBAI | YACGTR | 1 cut(s) | 477 |
| BstBI | TTCGAA | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 6 cut(s) | 319, 616, 828, 1348, 1884, 1964 |
| BstDSI | CCRYGG | 1 cut(s) | 1821 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 527, 2038, 2613 |
| BstF5I | GGATG | 6 cut(s) | 274, 871, 1108, 1556, 1840, 2535 |
| BstH2I | RGCGCY | 1 cut(s) | 1928 |
| BstHHI | GCGC | 2 cut(s) | 1927, 2126 |
| BstKTI | GATC | 9 cut(s) | 97, 458, 702, 955, 1297, 1787, 1819, 2638, 3403 |
| BstMAI | GTCTC | 4 cut(s) | 1088, 1697, 1735, 3369 |
| BstMBI | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 578, 727, 839, 1325, 2363, 2372, 2717, 3190 |
| BstNI | CCWGG | 8 cut(s) | 183, 913, 1176, 1467, 1613, 1789, 1902, 2589 |
| BstNSI | RCATGY | 3 cut(s) | 1966, 3377, 3393 |
| BstSCI | CCNGG | 9 cut(s) | 181, 911, 1174, 1465, 1563, 1611, 1787, 1900, 2587 |
| BstSFI | CTRYAG | 3 cut(s) | 249, 524, 956 |
| BstV1I | GCAGC | 6 cut(s) | 520, 842, 1318, 1683, 2614, 2916 |
| BstV2I | GAAGAC | 4 cut(s) | 1251, 1252, 2054, 2288 |
| BstX2I | RGATCY | 4 cut(s) | 455, 952, 1784, 3400 |
| BstYI | RGATCY | 4 cut(s) | 455, 952, 1784, 3400 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2035, 2307 |
| BsuI | GTATCC | 2 cut(s) | 665, 1173 |
| BtgI | CCRYGG | 1 cut(s) | 1821 |
| BtgZI | GCGATG | 1 cut(s) | 672 |
| BtsCI | GGATG | 6 cut(s) | 274, 871, 1108, 1556, 1840, 2535 |
| BtsIMutI | CAGTG | 4 cut(s) | 270, 682, 1375, 1424 |
| BveI | ACCTGC | 1 cut(s) | 1523 |
| Cac8I | GCNNGC | 6 cut(s) | 319, 616, 828, 1348, 1884, 1964 |
| CaiI | CAGNNNCTG | 2 cut(s) | 92, 353 |
| CciI | TCATGA | 1 cut(s) | 622 |
| CfoI | GCGC | 2 cut(s) | 1927, 2126 |
| Cfr13I | GGNCC | 3 cut(s) | 350, 1030, 2710 |
| Csp6I | GTAC | 6 cut(s) | 112, 2253, 2431, 3111, 3201, 3321 |
| CviQI | GTAC | 6 cut(s) | 112, 2253, 2431, 3111, 3201, 3321 |
| DinI | GGCGCC | 1 cut(s) | 1926 |
| DpnI | GATC | 9 cut(s) | 96, 457, 701, 954, 1296, 1786, 1818, 2637, 3402 |
| DpnII | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| DraI | TTTAAA | 2 cut(s) | 2422, 3244 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1145 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1614, 2082 |
| Eam1104I | CTCTTC | 3 cut(s) | 181, 545, 1318 |
| EarI | CTCTTC | 3 cut(s) | 181, 545, 1318 |
| Ecl136II | GAGCTC | 1 cut(s) | 235 |
| Eco130I | CCWWGG | 3 cut(s) | 787, 1821, 2323 |
| Eco147I | AGGCCT | 3 cut(s) | 911, 2322, 3193 |
| Eco24I | GRGCYC | 1 cut(s) | 237 |
| Eco32I | GATATC | 1 cut(s) | 131 |
| Eco47I | GGWCC | 1 cut(s) | 1030 |
| Eco53kI | GAGCTC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 2 cut(s) | 413, 1299 |
| Eco81I | CCTNAGG | 2 cut(s) | 2035, 2307 |
| EcoICRI | GAGCTC | 1 cut(s) | 235 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 527, 2038, 2613 |
| EcoO109I | RGGNCCY | 2 cut(s) | 350, 1030 |
| EcoRII | CCWGG | 8 cut(s) | 181, 911, 1174, 1465, 1611, 1787, 1900, 2587 |
| EcoRV | GATATC | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 3 cut(s) | 787, 1821, 2323 |
| EcoT38I | GRGCYC | 1 cut(s) | 237 |
| EgeI | GGCGCC | 1 cut(s) | 1926 |
| EheI | GGCGCC | 1 cut(s) | 1926 |
| ErhI | CCWWGG | 3 cut(s) | 787, 1821, 2323 |
| FaqI | GGGAC | 3 cut(s) | 1087, 2147, 2525 |
| FauI | CCCGC | 1 cut(s) | 2373 |
| FauNDI | CATATG | 1 cut(s) | 2023 |
| FblI | GTMKAC | 2 cut(s) | 3051, 3358 |
| Fnu4HI | GCNGC | 7 cut(s) | 534, 831, 1329, 1332, 1672, 2628, 2930 |
| FokI | GGATG | 6 cut(s) | 281, 878, 1115, 1543, 1847, 2542 |
| FriOI | GRGCYC | 1 cut(s) | 237 |
| Fsp4HI | GCNGC | 7 cut(s) | 534, 831, 1329, 1332, 1672, 2628, 2930 |
| FspBI | CTAG | 7 cut(s) | 72, 318, 1931, 2258, 2324, 3038, 3195 |
| GlaI | GCGC | 2 cut(s) | 1926, 2125 |
| GluI | GCNGC | 7 cut(s) | 534, 831, 1329, 1332, 1672, 2628, 2930 |
| GsaI | CCCAGC | 2 cut(s) | 1074, 1524 |
| GsuI | CTGGAG | 2 cut(s) | 83, 2610 |
| HaeII | RGCGCY | 1 cut(s) | 1928 |
| HapII | CCGG | 5 cut(s) | 63, 810, 903, 1565, 2708 |
| HhaI | GCGC | 2 cut(s) | 1927, 2126 |
| Hin1I | GRCGYC | 1 cut(s) | 1925 |
| Hin6I | GCGC | 2 cut(s) | 1925, 2124 |
| HinP1I | GCGC | 2 cut(s) | 1925, 2124 |
| HincII | GTYRAC | 1 cut(s) | 3256 |
| HindII | GTYRAC | 1 cut(s) | 3256 |
| HindIII | AAGCTT | 3 cut(s) | 1884, 1977, 2373 |
| HpaII | CCGG | 5 cut(s) | 63, 810, 903, 1565, 2708 |
| HphI | GGTGA | 8 cut(s) | 892, 1255, 1277, 1931, 2558, 2572, 2659, 2782 |
| Hpy166II | GTNNAC | 4 cut(s) | 3052, 3256, 3359, 3395 |
| Hpy188I | TCNGA | 6 cut(s) | 393, 718, 964, 1138, 1816, 2147 |
| Hpy8I | GTNNAC | 4 cut(s) | 3052, 3256, 3359, 3395 |
| HpyCH4IV | ACGT | 3 cut(s) | 476, 1403, 1746 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 578, 727, 839, 1325, 2363, 2372, 2717, 3190 |
| HpySE526I | ACGT | 3 cut(s) | 476, 1403, 1746 |
| Hsp92I | GRCGYC | 1 cut(s) | 1925 |
| HspAI | GCGC | 2 cut(s) | 1925, 2124 |
| KasI | GGCGCC | 1 cut(s) | 1924 |
| Kpn2I | TCCGGA | 2 cut(s) | 62, 809 |
| Kzo9I | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| LguI | GCTCTTC | 1 cut(s) | 545 |
| LmnI | GCTCC | 3 cut(s) | 208, 421, 3229 |
| Lsp1109I | GCAGC | 6 cut(s) | 520, 842, 1318, 1683, 2614, 2916 |
| LweI | GCATC | 8 cut(s) | 438, 588, 758, 773, 829, 955, 1093, 1825 |
| MaeI | CTAG | 7 cut(s) | 72, 318, 1931, 2258, 2324, 3038, 3195 |
| MaeII | ACGT | 3 cut(s) | 476, 1403, 1746 |
| MaeIII | GTNAC | 4 cut(s) | 1283, 2300, 2758, 3033 |
| MalI | GATC | 9 cut(s) | 96, 457, 701, 954, 1296, 1786, 1818, 2637, 3402 |
| MboI | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| MflI | RGATCY | 4 cut(s) | 455, 952, 1784, 3400 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MlsI | TGGCCA | 2 cut(s) | 5, 2084 |
| MluNI | TGGCCA | 2 cut(s) | 5, 2084 |
| Mly113I | GGCGCC | 1 cut(s) | 1925 |
| MlyI | GAGTC | 4 cut(s) | 92, 791, 1211, 1695 |
| MmeI | TCCRAC | 3 cut(s) | 1812, 2215, 2657 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 2084 |
| MroI | TCCGGA | 2 cut(s) | 62, 809 |
| MscI | TGGCCA | 2 cut(s) | 5, 2084 |
| MslI | CAYNNNNRTG | 2 cut(s) | 113, 1290 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 2084 |
| MspA1I | CMGCKG | 1 cut(s) | 1070 |
| MspI | CCGG | 5 cut(s) | 63, 810, 903, 1565, 2708 |
| MspR9I | CCNGG | 9 cut(s) | 183, 913, 1176, 1467, 1565, 1613, 1789, 1902, 2589 |
| MvaI | CCWGG | 8 cut(s) | 183, 913, 1176, 1467, 1613, 1789, 1902, 2589 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 578, 727, 839, 1325, 2363, 2372, 2717, 3190 |
| NarI | GGCGCC | 1 cut(s) | 1925 |
| NciI | CCSGG | 1 cut(s) | 1565 |
| NcoI | CCATGG | 1 cut(s) | 1821 |
| NdeI | CATATG | 1 cut(s) | 2023 |
| NdeII | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| NheI | GCTAGC | 1 cut(s) | 317 |
| NlaIV | GGNNCC | 4 cut(s) | 446, 1018, 1786, 1926 |
| NmuCI | GTSAC | 1 cut(s) | 1283 |
| NspI | RCATGY | 3 cut(s) | 1966, 3377, 3393 |
| NspV | TTCGAA | 1 cut(s) | 848 |
| PaeI | GCATGC | 1 cut(s) | 1966 |
| PagI | TCATGA | 1 cut(s) | 622 |
| PceI | AGGCCT | 3 cut(s) | 911, 2322, 3193 |
| PciI | ACATGT | 1 cut(s) | 3373 |
| PciSI | GCTCTTC | 1 cut(s) | 545 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 305, 695 |
| PfeI | GAWTC | 9 cut(s) | 344, 358, 626, 758, 1124, 1778, 1936, 2584, 2659 |
| PfoI | TCCNGGA | 3 cut(s) | 181, 1787, 2587 |
| PkrI | GCNGC | 7 cut(s) | 535, 832, 1330, 1333, 1673, 2629, 2931 |
| PleI | GAGTC | 4 cut(s) | 91, 791, 1211, 1694 |
| PluTI | GGCGCC | 1 cut(s) | 1928 |
| PpsI | GAGTC | 4 cut(s) | 91, 791, 1211, 1694 |
| Ppu21I | YACGTR | 1 cut(s) | 477 |
| PpuMI | RGGWCCY | 1 cut(s) | 1030 |
| PscI | ACATGT | 1 cut(s) | 3373 |
| PshBI | ATTAAT | 1 cut(s) | 2694 |
| PsiI | TTATAA | 2 cut(s) | 212, 2964 |
| Psp124BI | GAGCTC | 1 cut(s) | 237 |
| Psp5II | RGGWCCY | 1 cut(s) | 1030 |
| Psp6I | CCWGG | 8 cut(s) | 181, 911, 1174, 1465, 1611, 1787, 1900, 2587 |
| PspFI | CCCAGC | 2 cut(s) | 1070, 1520 |
| PspGI | CCWGG | 8 cut(s) | 181, 911, 1174, 1465, 1611, 1787, 1900, 2587 |
| PspN4I | GGNNCC | 4 cut(s) | 446, 1018, 1786, 1926 |
| PspPI | GGNCC | 3 cut(s) | 350, 1030, 2710 |
| PspPPI | RGGWCCY | 1 cut(s) | 1030 |
| PstI | CTGCAG | 3 cut(s) | 253, 528, 960 |
| PstNI | CAGNNNCTG | 2 cut(s) | 92, 353 |
| PsuI | RGATCY | 4 cut(s) | 455, 952, 1784, 3400 |
| PvuII | CAGCTG | 1 cut(s) | 1070 |
| RsaI | GTAC | 6 cut(s) | 113, 2254, 2432, 3112, 3202, 3322 |
| RsaNI | GTAC | 6 cut(s) | 112, 2253, 2431, 3111, 3201, 3321 |
| RseI | CAYNNNNRTG | 2 cut(s) | 113, 1290 |
| SacI | GAGCTC | 1 cut(s) | 237 |
| SapI | GCTCTTC | 1 cut(s) | 545 |
| SatI | GCNGC | 7 cut(s) | 534, 831, 1329, 1332, 1672, 2628, 2930 |
| Sau3AI | GATC | 9 cut(s) | 94, 455, 699, 952, 1294, 1784, 1816, 2635, 3400 |
| Sau96I | GGNCC | 3 cut(s) | 350, 1030, 2710 |
| SbfI | CCTGCAGG | 1 cut(s) | 528 |
| ScaI | AGTACT | 1 cut(s) | 2432 |
| SchI | GAGTC | 4 cut(s) | 92, 791, 1211, 1695 |
| ScrFI | CCNGG | 9 cut(s) | 183, 913, 1176, 1467, 1565, 1613, 1789, 1902, 2589 |
| SdaI | CCTGCAGG | 1 cut(s) | 528 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SfaNI | GCATC | 8 cut(s) | 438, 588, 758, 773, 829, 955, 1093, 1825 |
| SfcI | CTRYAG | 3 cut(s) | 249, 524, 956 |
| SfoI | GGCGCC | 1 cut(s) | 1926 |
| SfuI | TTCGAA | 1 cut(s) | 848 |
| SinI | GGWCC | 1 cut(s) | 1030 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 113, 1290 |
| SmlI | CTYRAG | 2 cut(s) | 34, 3404 |
| SmoI | CTYRAG | 2 cut(s) | 34, 3404 |
| SphI | GCATGC | 1 cut(s) | 1966 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 528 |
| SseBI | AGGCCT | 3 cut(s) | 911, 2322, 3193 |
| SsiI | CCGC | 2 cut(s) | 1328, 2380 |
| SspDI | GGCGCC | 1 cut(s) | 1924 |
| SspI | AATATT | 2 cut(s) | 706, 859 |
| SspMI | CTAG | 7 cut(s) | 72, 318, 1931, 2258, 2324, 3038, 3195 |
| SstI | GAGCTC | 1 cut(s) | 237 |
| StuI | AGGCCT | 3 cut(s) | 911, 2322, 3193 |
| StyD4I | CCNGG | 9 cut(s) | 181, 911, 1174, 1465, 1563, 1611, 1787, 1900, 2587 |
| StyI | CCWWGG | 3 cut(s) | 787, 1821, 2323 |
| TaiI | ACGT | 3 cut(s) | 479, 1406, 1749 |
| TaqI | TCGA | 7 cut(s) | 142, 299, 848, 1008, 1431, 2413, 3214 |
| TatI | WGTACW | 3 cut(s) | 111, 2430, 3200 |
| TauI | GCSGC | 1 cut(s) | 1331 |
| TfiI | GAWTC | 9 cut(s) | 344, 358, 626, 758, 1124, 1778, 1936, 2584, 2659 |
| TscAI | CASTG | 4 cut(s) | 270, 682, 1375, 1431 |
| TseFI | GTSAC | 1 cut(s) | 1283 |
| TseI | GCWGC | 6 cut(s) | 533, 830, 1331, 1671, 2627, 2929 |
| Tsp45I | GTSAC | 1 cut(s) | 1283 |
| TspGWI | ACGGA | 1 cut(s) | 2321 |
| TspRI | CASTG | 4 cut(s) | 270, 682, 1375, 1431 |
| VpaK11BI | GGWCC | 1 cut(s) | 1030 |
| VspI | ATTAAT | 1 cut(s) | 2694 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 527, 2038, 2613 |
| XapI | RAATTY | 7 cut(s) | 11, 1772, 2077, 2201, 2271, 2575, 2798 |
| XceI | RCATGY | 3 cut(s) | 1966, 3377, 3393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1828 |
| XmaJI | CCTAGG | 1 cut(s) | 2323 |
| XmiI | GTMKAC | 2 cut(s) | 3051, 3358 |
| XspI | CTAG | 7 cut(s) | 72, 318, 1931, 2258, 2324, 3038, 3195 |
| ZrmI | AGTACT | 1 cut(s) | 2432 |