Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007214.1

Orthogroup ID

OG0000144

Physical Location & Seq

Genomic Coordinates Forward (+)

31105 .. 35067

Gene Structure 3963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007214.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgatccctttggagcccccatacatgggattcttgcgtttttatctacaaatcagatcaagggctctggttgatccagatggagcattgagtgatgtgcggaatttggatagcataagcttctcagattggttcatgtccaagggtggcacacgcacgagtatccagagaatgtgggatcctgttgcgtacgctcttgggttcactgttgttgcccaaggctgggtgattgaagcagaggatatatacggttcgtatttggtgggccccggggcatggttagctccgcctatggcatgcatccggtatactgacacccgagctacgttgccatggtggaggtcagccggtaaccgcaatggtcgtggtgttgatgcagaccgcactttaaagtttggagatgaggcagtgaaattgaagctgatctatgacatagaggagtggtggattgatgcaggggttgatccggtaggtcttttgtgcatgtcatacttgttggaatcaacaaacaacgaaattttattgaaacataagcaacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

5.17

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica	MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica	Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis	pycom03g01090 pycom17g01570
rosa_chinensis	RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata	RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora	Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii	Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa	Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha	Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana	Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	4 cut(s)	100, 287, 355, 382
AclWI	GGATC	4 cut(s)	68, 173, 186, 458
AcsI	RAATTY	2 cut(s)	103, 516
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	5 cut(s)	25, 26, 222, 223, 276
AgsI	TTSAA	3 cut(s)	233, 418, 526
AluBI	AGCT	4 cut(s)	120, 284, 323, 421
AluI	AGCT	4 cut(s)	120, 284, 323, 421
AlwI	GGATC	4 cut(s)	68, 173, 186, 458
Ama87I	CYCGRG	2 cut(s)	269, 318
AoxI	GGCC	1 cut(s)	265
ApaI	GGGCCC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	103, 516
AspS9I	GGNCC	2 cut(s)	265, 266
AsuC2I	CCSGG	2 cut(s)	270, 271
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	2 cut(s)	269, 318
BaeGI	GKGCMC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	178
BanII	GRGCYC	3 cut(s)	18, 67, 269
BauI	CACGAG	1 cut(s)	157
BccI	CCATC	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	173
BcnI	CCSGG	2 cut(s)	270, 271
BfuI	GTATCC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	270, 271
BmeT110I	CYCGRG	2 cut(s)	269, 318
BmgT120I	GGNCC	2 cut(s)	265, 266
BmiI	GGNNCC	4 cut(s)	15, 180, 267, 268
BmrFI	CCNGG	2 cut(s)	270, 271
BmsI	GCATC	3 cut(s)	309, 364, 442
BpuMI	CCSGG	2 cut(s)	270, 271
BsaJI	CCNNGG	6 cut(s)	141, 217, 268, 269, 270, 332
BsaWI	WCCGGW	2 cut(s)	303, 466
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 26, 222, 223, 276
Bse118I	RCCGGY	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	6 cut(s)	141, 217, 268, 269, 270, 332
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	5 cut(s)	25, 26, 222, 223, 276
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	269
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	269, 318
BsiSI	CCGG	4 cut(s)	270, 304, 348, 467
BsiWI	CGTACG	1 cut(s)	189
BslI	CCNNNNNNNGG	5 cut(s)	25, 26, 222, 223, 276
BsnI	GGCC	1 cut(s)	267
BsoBI	CYCGRG	2 cut(s)	269, 318
Bsp120I	GGGCCC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	18, 67, 269
Bsp143I	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	4 cut(s)	100, 287, 355, 382
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	15, 180, 267, 268
BspPI	GGATC	4 cut(s)	68, 173, 186, 458
BsrDI	GCAATG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	6 cut(s)	141, 217, 268, 269, 270, 332
BssMI	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
BssNAI	GTATAC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	3 cut(s)	141, 217, 332
Bst1107I	GTATAC	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	208, 251
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	332
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	6 cut(s)	6, 59, 76, 181, 426, 466
BstMBI	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	300, 487
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	268, 269
BstSLI	GKGCMC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	204, 414
Cac8I	GCNNGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	265, 266
Cfr9I	CCCGGG	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	6 cut(s)	25, 136, 276, 297, 333, 484
CviJI	RGCY	9 cut(s)	16, 65, 120, 222, 267, 284, 323, 347, 421
CviKI_1	RGCY	9 cut(s)	16, 65, 120, 222, 267, 284, 323, 347, 421
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	6 cut(s)	5, 58, 75, 180, 425, 465
DpnII	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
DraI	TTTAAA	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	3 cut(s)	141, 217, 332
Eco24I	GRGCYC	3 cut(s)	18, 67, 269
Eco88I	CYCGRG	2 cut(s)	269, 318
Eco91I	GGTNACC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	350
EcoT14I	CCWWGG	3 cut(s)	141, 217, 332
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	3 cut(s)	18, 67, 269
ErhI	CCWWGG	3 cut(s)	141, 217, 332
FaeI	CATG	6 cut(s)	28, 139, 279, 300, 336, 487
FatI	CATG	6 cut(s)	24, 135, 275, 296, 332, 483
FblI	GTMKAC	1 cut(s)	308
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	3 cut(s)	18, 67, 269
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	4 cut(s)	270, 304, 348, 467
Hin1II	CATG	6 cut(s)	28, 139, 279, 300, 336, 487
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	2 cut(s)	30, 500
HpaII	CCGG	4 cut(s)	270, 304, 348, 467
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	204, 309
Hpy188I	TCNGA	2 cut(s)	56, 127
Hpy188III	TCNNGA	2 cut(s)	77, 166
Hpy8I	GTNNAC	2 cut(s)	204, 309
HpyCH4III	ACNGT	2 cut(s)	208, 251
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	300, 377, 455, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	6 cut(s)	28, 139, 279, 300, 336, 487
Kzo9I	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
LmnI	GCTCC	3 cut(s)	13, 83, 289
LweI	GCATC	3 cut(s)	309, 364, 442
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	6 cut(s)	5, 58, 75, 180, 425, 465
MboI	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	3 cut(s)	18, 67, 269
MluCI	AATT	3 cut(s)	103, 413, 516
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	232, 333, 397, 430
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	1 cut(s)	389
MspI	CCGG	4 cut(s)	270, 304, 348, 467
MspR9I	CCNGG	2 cut(s)	270, 271
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	270, 271
NcoI	CCATGG	1 cut(s)	332
NdeII	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
NlaIII	CATG	6 cut(s)	28, 139, 279, 300, 336, 487
NlaIV	GGNNCC	4 cut(s)	15, 180, 267, 268
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	2 cut(s)	300, 487
PaeI	GCATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	30, 500
Pfl23II	CGTACG	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	4 cut(s)	15, 180, 267, 268
PspOMI	GGGCCC	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	265, 266
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	6 cut(s)	3, 56, 73, 178, 423, 463
Sau96I	GGNCC	2 cut(s)	265, 266
ScrFI	CCNGG	2 cut(s)	270, 271
SduI	GDGCHC	3 cut(s)	18, 67, 269
SetI	ASST	7 cut(s)	122, 286, 325, 329, 344, 423, 475
SfaNI	GCATC	3 cut(s)	309, 364, 442
SmaI	CCCGGG	1 cut(s)	271
SphI	GCATGC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	103, 413, 516
SsiI	CCGC	4 cut(s)	100, 287, 355, 382
StyD4I	CCNGG	2 cut(s)	268, 269
StyI	CCWWGG	3 cut(s)	141, 217, 332
TaaI	ACNGT	2 cut(s)	208, 251
TaiI	ACGT	1 cut(s)	329
TasI	AATT	3 cut(s)	103, 413, 516
TfiI	GAWTC	2 cut(s)	30, 500
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	211, 414
TspDTI	ATGAA	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	211, 414
XapI	RAATTY	2 cut(s)	103, 516
XceI	RCATGY	2 cut(s)	300, 487
XmaI	CCCGGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.