Rh7AG407700

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000144
Physical Location & Seq
Forward (+)
54181787 .. 54182140
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG407700.1

Sequence Viewer

Length: 354 bp
ATGTATGCAGCAGTTCATAATAGTGGCGAACTGGCTTTGTGTAGACCTAGAGACAAAAGCTGGAGTGTCTACCAAGTATTTGAAGAAAATGAAAATCTTGTCGAGAGAGTCAACAGAATATTGTTTTCCACCACTGGCGTGCTATATGCCTTGGTTACAGGTAACCGCAATGGTCGTGGTGTTGATGCAGACCGCACTTTAAAGTTCGGAGATGAGGCAGTGAAATTGAAGCTGATCTATGACATAGAGGAGTGGTGGATTGATGCAGGGGTTGATCCGGTAGGGCTTTTGTGCATGTCATACTTATTGGAATCAACAAACAATGAAATTTTATTGAAACATAAGCAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

117

Amino Acids

13.37

Weight (kDa)

5.32

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 43, 69
AciI CCGC 2 cut(s) 166, 193
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 327
AgsI TTSAA 3 cut(s) 83, 229, 337
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 2 cut(s) 60, 232
AluI AGCT 2 cut(s) 60, 232
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 327
BbvI GCAGC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmsI GCATC 2 cut(s) 175, 253
BpmI CTGGAG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 36, 139
Bse3DI GCAATG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 36, 139
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 234, 274
BspACI CCGC 2 cut(s) 166, 193
BspPI GGATC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 36, 139
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 234, 274
BssT1I CCWWGG 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 161
BstKTI GATC 2 cut(s) 237, 277
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 234, 274
BstNSI RCATGY 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 132, 225
Cac8I GCNNGC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 295
CviJI RGCY 4 cut(s) 35, 60, 232, 286
CviKI_1 RGCY 4 cut(s) 35, 60, 232, 286
DpnI GATC 2 cut(s) 236, 276
DpnII GATC 2 cut(s) 234, 274
DraI TTTAAA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 298
FaiI YATR 9 cut(s) 6, 18, 145, 147, 240, 245, 296, 301, 342
FatI CATG 1 cut(s) 294
FblI GTMKAC 2 cut(s) 43, 69
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 82
HapII CCGG 1 cut(s) 278
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 108, 311
HpaII CCGG 1 cut(s) 278
Hpy166II GTNNAC 3 cut(s) 44, 70, 112
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 3 cut(s) 44, 70, 112
HpyCH4V TGCA 4 cut(s) 8, 188, 266, 294
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 2 cut(s) 234, 274
LpnPI CCDG 6 cut(s) 17, 46, 120, 144, 252, 291
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 175, 253
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 154, 161
MalI GATC 2 cut(s) 236, 276
MboI GATC 2 cut(s) 234, 274
MboII GAAGA 1 cut(s) 95
MluCI AATT 2 cut(s) 224, 327
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 2 cut(s) 208, 241
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 21, 137
MspI CCGG 1 cut(s) 278
NdeII GATC 2 cut(s) 234, 274
NlaIII CATG 1 cut(s) 298
NspI RCATGY 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 21, 137
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 234, 274
SchI GAGTC 1 cut(s) 117
SetI ASST 4 cut(s) 49, 62, 163, 234
SfaNI GCATC 2 cut(s) 175, 253
SmiMI CAYNNNNRTG 2 cut(s) 21, 137
Sse9I AATT 2 cut(s) 224, 327
SsiI CCGC 2 cut(s) 166, 193
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 224, 327
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 2 cut(s) 139, 225
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 5, 105, 339
TspRI CASTG 2 cut(s) 139, 225
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 2 cut(s) 43, 69
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.