Rorug03G0315200

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000144
Physical Location & Seq
Reverse (-)
33964679 .. 33966293
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0315200.1

Sequence Viewer

Length: 807 bp
ATGATGCCTTTGCTCTTTGTCTTCCTCCGTTGCCCTGGATTGCTCTACACCGTTTCTCGCTATTTCTATTTCTATTTCAAAGTTGGGCTCTGTTTGATGAGAAATTTTGCATGGGATTATGGGAACGTAAGTATATACAGTCGTGCTTTAGGATCAGTCTTGATTGTGGCCGGGCTCCATTCTGTTCTTTGGGGGAAGACCAAGGAGACTGCGAAGCTTGAGGGAATGAGGCCAAAGAAACAGACACAAGGAGAAATTTGTGTGACCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTCTGATCCTAATGTTCATCAAGGACCCCAGGTCGATAAAAAGCAGTTTGAGAAAATTTTGACCTACATTGAGCATGGGAAAAGAGAAGGAGCAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGATATGCTTATTGCCAAGGATGACATATTCGGACCTGTAACAGCTAATGAAGTTCAAGTAAGCACAAGCCTGATTCCTTTTGTTTCATTTAGCCTATCTGATAAGCTAAAAATGGACATAAGTTTTGCTTATAACCCTGAGCAATTTTGCAGGACCATTGAGGAGGGAGTAGCGAGAGCCAACAACACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAGGAACATCATGTGGCCAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

268

Amino Acids

30.07

Weight (kDa)

8.86

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 82 - 190 4.7e-38 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AccII CGCG 1 cut(s) 788
AciI CCGC 1 cut(s) 786
AclWI GGATC 4 cut(s) 160, 347, 356, 360
AcoI YGGCCR 2 cut(s) 168, 761
AcsI RAATTY 4 cut(s) 103, 255, 294, 411
AgsI TTSAA 3 cut(s) 79, 287, 584
AhdI GACNNNNNGTC 1 cut(s) 386
AjnI CCWGG 3 cut(s) 34, 384, 746
AluBI AGCT 4 cut(s) 217, 572, 634, 731
AluI AGCT 4 cut(s) 217, 572, 634, 731
Alw26I GTCTC 2 cut(s) 200, 777
AlwI GGATC 4 cut(s) 160, 347, 356, 360
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 4 cut(s) 168, 230, 724, 761
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 4 cut(s) 103, 255, 294, 411
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 3 cut(s) 380, 560, 681
AsuC2I CCSGG 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 3 cut(s) 380, 560, 681
BalI TGGCCA 1 cut(s) 763
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 90, 177
BarI GAAGNNNNNNTAC 2 cut(s) 476, 508
BbsI GAAGAC 2 cut(s) 13, 203
BbvI GCAGC 1 cut(s) 718
BciT130I CCWGG 3 cut(s) 36, 386, 748
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 200, 777
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 733
Bme1390I CCNGG 4 cut(s) 36, 172, 386, 748
Bme18I GGWCC 3 cut(s) 380, 560, 681
BmeRI GACNNNNNGTC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 380, 560, 681
BmiI GGNNCC 3 cut(s) 176, 354, 382
BmrFI CCNGG 4 cut(s) 36, 172, 386, 748
BpiI GAAGAC 2 cut(s) 13, 203
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 239, 759
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 34, 201, 384, 543
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 36, 386, 748
BseDI CCNNGG 4 cut(s) 34, 201, 384, 543
BseGI GGATG 2 cut(s) 532, 553
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 4 cut(s) 170, 232, 726, 763
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 200, 777
BsmBI CGTCTC 1 cut(s) 777
BsnI GGCC 4 cut(s) 170, 232, 726, 763
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 90, 177
Bsp143I GATC 4 cut(s) 152, 352, 361, 778
BspACI CCGC 1 cut(s) 786
BspANI GGCC 4 cut(s) 170, 232, 726, 763
BspCNI CTCAG 1 cut(s) 658
BspFNI CGCG 1 cut(s) 788
BspLI GGNNCC 3 cut(s) 176, 354, 382
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 4 cut(s) 160, 347, 356, 360
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 4 cut(s) 34, 201, 384, 543
BssMI GATC 4 cut(s) 152, 352, 361, 778
BssT1I CCWWGG 2 cut(s) 201, 543
Bst2UI CCWGG 3 cut(s) 36, 386, 748
Bst4CI ACNGT 4 cut(s) 52, 140, 508, 771
BstC8I GCNNGC 2 cut(s) 736, 792
BstDEI CTNAG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 532, 553
BstFNI CGCG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 4 cut(s) 155, 355, 364, 781
BstMAI GTCTC 2 cut(s) 200, 777
BstMBI GATC 4 cut(s) 152, 352, 361, 778
BstNI CCWGG 3 cut(s) 36, 386, 748
BstSCI CCNGG 4 cut(s) 34, 170, 384, 746
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 1 cut(s) 718
BstV2I GAAGAC 2 cut(s) 13, 203
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 4 cut(s) 170, 232, 726, 763
BtsCI GGATG 2 cut(s) 532, 553
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 736, 792
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 3 cut(s) 380, 560, 681
CviAII CATG 3 cut(s) 111, 431, 757
DdeI CTNAG 1 cut(s) 666
DpnI GATC 4 cut(s) 154, 354, 363, 780
DpnII GATC 4 cut(s) 152, 352, 361, 778
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 2 cut(s) 168, 761
Eam1105I GACNNNNNGTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 201, 543
Eco24I GRGCYC 2 cut(s) 90, 177
Eco47I GGWCC 3 cut(s) 380, 560, 681
Eco88I CYCGRG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 3 cut(s) 34, 384, 746
EcoT14I CCWWGG 2 cut(s) 201, 543
EcoT38I GRGCYC 2 cut(s) 90, 177
ErhI CCWWGG 2 cut(s) 201, 543
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 3 cut(s) 114, 434, 760
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FatI CATG 3 cut(s) 110, 430, 756
Fnu4HI GCNGC 1 cut(s) 732
FokI GGATG 2 cut(s) 539, 560
FriOI GRGCYC 2 cut(s) 90, 177
Fsp4HI GCNGC 1 cut(s) 732
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 789
GluI GCNGC 1 cut(s) 732
HaeIII GGCC 4 cut(s) 170, 232, 726, 763
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 790
Hin1II CATG 3 cut(s) 114, 434, 760
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 276, 601
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 3 cut(s) 361, 560, 628
Hpy188III TCNNGA 4 cut(s) 160, 273, 287, 776
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 5 cut(s) 284, 322, 366, 437, 478
HpyCH4III ACNGT 4 cut(s) 52, 140, 508, 771
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 110, 322, 678, 734
HpyF3I CTNAG 1 cut(s) 666
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 3 cut(s) 114, 434, 760
HspAI GCGC 1 cut(s) 788
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 4 cut(s) 152, 352, 361, 778
LmnI GCTCC 2 cut(s) 180, 446
Lsp1109I GCAGC 1 cut(s) 718
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 262, 565, 742
MalI GATC 4 cut(s) 154, 354, 363, 780
MboI GATC 4 cut(s) 152, 352, 361, 778
MboII GAAGA 4 cut(s) 13, 208, 325, 493
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 90, 177
MlsI TGGCCA 1 cut(s) 763
MluCI AATT 5 cut(s) 103, 255, 294, 411, 671
MluNI TGGCCA 1 cut(s) 763
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 6 cut(s) 35, 214, 222, 458, 682, 685
Mox20I TGGCCA 1 cut(s) 763
MscI TGGCCA 1 cut(s) 763
MseI TTAA 1 cut(s) 458
Msp20I TGGCCA 1 cut(s) 763
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 4 cut(s) 36, 172, 386, 748
MvaI CCWGG 3 cut(s) 36, 386, 748
MvnI CGCG 1 cut(s) 788
NciI CCSGG 1 cut(s) 172
NdeII GATC 4 cut(s) 152, 352, 361, 778
NlaIII CATG 3 cut(s) 114, 434, 760
NlaIV GGNNCC 3 cut(s) 176, 354, 382
NmuCI GTSAC 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 273
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 733
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 380
PsiI TTATAA 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 3 cut(s) 34, 384, 746
PspGI CCWGG 3 cut(s) 34, 384, 746
PspN4I GGNNCC 3 cut(s) 176, 354, 382
PspPI GGNCC 3 cut(s) 380, 560, 681
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 1 cut(s) 736
PsuI RGATCY 1 cut(s) 352
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 1 cut(s) 732
Sau3AI GATC 4 cut(s) 152, 352, 361, 778
Sau96I GGNCC 3 cut(s) 380, 560, 681
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 4 cut(s) 36, 172, 386, 748
SduI GDGCHC 2 cut(s) 90, 177
SetI ASST 8 cut(s) 129, 219, 390, 422, 565, 574, 636, 733
SfcI CTRYAG 1 cut(s) 732
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 3 cut(s) 380, 560, 681
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 218, 273, 774
SmoI CTYRAG 3 cut(s) 218, 273, 774
Sse9I AATT 5 cut(s) 103, 255, 294, 411, 671
SsiI CCGC 1 cut(s) 786
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 4 cut(s) 34, 170, 384, 746
StyI CCWWGG 2 cut(s) 201, 543
TaaI ACNGT 4 cut(s) 52, 140, 508, 771
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 274, 390
TasI AATT 5 cut(s) 103, 255, 294, 411, 671
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 4 cut(s) 318, 362, 591, 603
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 3 cut(s) 380, 560, 681
XapI RAATTY 4 cut(s) 103, 255, 294, 411
XhoI CTCGAG 1 cut(s) 273
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.