Rroxscaffold_7G00205790

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000144
Physical Location & Seq
Forward (+)
55432235 .. 55433395
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205790.1

Sequence Viewer

Length: 1161 bp
ATGGTCATGCTCTCTCTATATTTGTCTTACAGTAACTTGGGACACTACCTCCGCTGGTTTACCAGGTCTGTTTCCTTCAAGCAATTACATGAACACAAAATATCTGCAGGCAAGAGAAAACAAATCGAGAACTGCAACGACGACCAAATTACTTGTCATGGGTCAGTTGGGTGCTGGCAGACACCGCCACAAGACATCATGGAGGAGATTCTACAGAAAATGGGTTTAATTGCTCGTACACGCTTAGCCAAGGTCTGCATGTCTTGGAGTTCACTTGTTATGAGAGCTGATATCCGCAGTGCTCCGCAACTGCCATGGTTAGTACACCCTCAAACCCCAAACACCAACTACTTAACCTTTTCCAGCCTCTCTGAGGGTGAAGTTGTGAACTTGGAGCTCCCAAAGCGATTCCGAGGACAAGGCAAGTTCAAGTTTCGAGCGTCTTCTAAAGGTTGGTTGATCATTTTACAAGAAAAAGGATTCGGCTTTGATATGTTCCTATACAATCCGATTTCTAGAGCCCAACACCAACTTCCTTCCTTAAACACTATTCCATCTTTCCTATCTTTCCAACTAGCAAGAATGCTAGGGAAGGTTATCAACAATCATGCCAACAAACATGCCGAGAATTTTGTATCTAAAGTTGTGTTGTCTAGTCCAAATGTCTCAGAATGCATTGTGGCTGCCGTTTTCGAACCTCAGCATGAATTGGGATTATGCAGACCTGGAGACAAAAGCTGGACTGTCTTTGAGATACTGAATCATGAGGACGACTTCCTCATGGATTTACTTTTTTCGCAGGGCATGCTATACGGCTTTGTTGATAATAGCAAGTCCAGCAAGAATGGCATCGGCGCAGCTCGCATCTTAAACTTTGGAGATGATCAGGCAATGACAGTGGAATTGAAATTGGTCTACGGCCATAAAGAAGTTGGTAATACTACAGAATATCACGATGGCTTTCTAATCTTTTTAAATAGAGACTACAACTCATATTTGTTAGAATCAACAACAAATAGCGACAAGGAAATCTTGTTGATCCATCAAATGCTCGATTGTTTAATCCCCAACTGTGCTGATGATGATGATGATGATGATGATTATGAGTCGGAAATCGAATATCAGAGGACAAGCGGGTTTGCAGTATACATGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

386

Amino Acids

44.07

Weight (kDa)

5.63

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 120 - 384 1.2e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 915, 1146
AciI CCGC 5 cut(s) 52, 185, 295, 305, 1134
AclWI GGATC 1 cut(s) 1033
AcoI YGGCCR 1 cut(s) 919
AcsI RAATTY 1 cut(s) 628
AfaI GTAC 2 cut(s) 238, 324
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 3 cut(s) 79, 430, 907
AjnI CCWGG 2 cut(s) 62, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 4 cut(s) 287, 397, 738, 860
AluI AGCT 4 cut(s) 287, 397, 738, 860
Alw21I GWGCWC 2 cut(s) 304, 399
Alw26I GTCTC 3 cut(s) 670, 723, 975
AlwI GGATC 1 cut(s) 1033
AoxI GGCC 1 cut(s) 919
ApeKI GCWGC 2 cut(s) 683, 857
ApoI RAATTY 1 cut(s) 628
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 1 cut(s) 857
AsuHPI GGTGA 1 cut(s) 389
AsuII TTCGAA 1 cut(s) 693
BanII GRGCYC 2 cut(s) 399, 523
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 304, 399
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 2 cut(s) 670, 869
BccI CCATC 3 cut(s) 562, 950, 1050
BceAI ACGGC 3 cut(s) 671, 829, 934
BciT130I CCWGG 2 cut(s) 64, 726
BclI TGATCA 2 cut(s) 459, 883
BcoDI GTCTC 3 cut(s) 670, 723, 975
BfaI CTAG 4 cut(s) 516, 575, 587, 654
BfmI CTRYAG 3 cut(s) 105, 212, 942
BisI GCNGC 2 cut(s) 684, 858
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 2 cut(s) 685, 859
Bme1390I CCNGG 2 cut(s) 64, 726
BmrFI CCNGG 2 cut(s) 64, 726
BmsI GCATC 2 cut(s) 858, 873
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 249, 314, 412
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 897
BseBI CCWGG 2 cut(s) 64, 726
BseDI CCNNGG 3 cut(s) 249, 314, 412
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 3 cut(s) 363, 681, 713
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 670, 869
BshFI GGCC 1 cut(s) 921
BsiHKAI GWGCWC 2 cut(s) 304, 399
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 670, 723, 975
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 2 cut(s) 588, 677
BsnI GGCC 1 cut(s) 921
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 3 cut(s) 304, 399, 523
Bsp143I GATC 3 cut(s) 459, 883, 1038
Bsp1720I GCTNAGC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 5 cut(s) 52, 185, 295, 305, 1134
BspANI GGCC 1 cut(s) 921
BspCNI CTCAG 3 cut(s) 364, 680, 712
BspHI TCATGA 1 cut(s) 763
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 1033
BspT104I TTCGAA 1 cut(s) 693
BsrDI GCAATG 1 cut(s) 897
BssECI CCNNGG 3 cut(s) 249, 314, 412
BssMI GATC 3 cut(s) 459, 883, 1038
BssNAI GTATAC 1 cut(s) 1147
BssT1I CCWWGG 2 cut(s) 249, 314
Bst1107I GTATAC 1 cut(s) 1147
Bst2UI CCWGG 2 cut(s) 64, 726
Bst4CI ACNGT 4 cut(s) 32, 745, 898, 1073
BstAPI GCANNNNNTGC 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 4 cut(s) 109, 176, 806, 862
BstDEI CTNAG 4 cut(s) 244, 372, 667, 699
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 3 cut(s) 462, 886, 1041
BstMAI GTCTC 3 cut(s) 670, 723, 975
BstMBI GATC 3 cut(s) 459, 883, 1038
BstMWI GCNNNNNNNGC 6 cut(s) 184, 403, 805, 837, 846, 861
BstNI CCWGG 2 cut(s) 64, 726
BstNSI RCATGY 4 cut(s) 262, 623, 808, 1153
BstSCI CCNGG 2 cut(s) 62, 724
BstSFI CTRYAG 3 cut(s) 105, 212, 942
BstV1I GCAGC 2 cut(s) 670, 869
BstV2I GAAGAC 1 cut(s) 435
BstZ17I GTATAC 1 cut(s) 1147
BsuRI GGCC 1 cut(s) 921
BtgI CCRYGG 1 cut(s) 314
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 903
Cac8I GCNNGC 4 cut(s) 109, 176, 806, 862
CciI TCATGA 1 cut(s) 763
CfoI GCGC 1 cut(s) 857
CseI GACGC 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 62
Csp6I GTAC 2 cut(s) 237, 323
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviQI GTAC 2 cut(s) 237, 323
DdeI CTNAG 4 cut(s) 244, 372, 667, 699
DpnI GATC 3 cut(s) 461, 885, 1040
DpnII GATC 3 cut(s) 459, 883, 1038
DraI TTTAAA 1 cut(s) 975
EaeI YGGCCR 1 cut(s) 919
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 249, 314
Eco24I GRGCYC 2 cut(s) 399, 523
Eco32I GATATC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 62, 724
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 249, 314
EcoT22I ATGCAT 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 399, 523
ErhI CCWWGG 2 cut(s) 249, 314
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 1 cut(s) 1127
FbaI TGATCA 2 cut(s) 459, 883
FblI GTMKAC 2 cut(s) 915, 1146
Fnu4HI GCNGC 2 cut(s) 684, 858
FriOI GRGCYC 2 cut(s) 399, 523
Fsp4HI GCNGC 2 cut(s) 684, 858
FspBI CTAG 4 cut(s) 516, 575, 587, 654
GlaI GCGC 1 cut(s) 856
GluI GCNGC 2 cut(s) 684, 858
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 921
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 857
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HinfI GANTC 6 cut(s) 208, 408, 480, 760, 1004, 1106
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 7 cut(s) 60, 239, 272, 325, 388, 916, 1147
Hpy188I TCNGA 6 cut(s) 373, 413, 510, 670, 1111, 1125
Hpy188III TCNNGA 4 cut(s) 127, 516, 764, 953
Hpy8I GTNNAC 7 cut(s) 60, 239, 272, 325, 388, 916, 1147
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 85, 546, 586
HpyCH4III ACNGT 4 cut(s) 32, 745, 898, 1073
HpyCH4V TGCA 7 cut(s) 107, 135, 258, 675, 720, 1142, 1153
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 403, 805, 837, 846, 861
HpyF3I CTNAG 4 cut(s) 244, 372, 667, 699
HspAI GCGC 1 cut(s) 855
Ksp22I TGATCA 2 cut(s) 459, 883
Kzo9I GATC 3 cut(s) 459, 883, 1038
LmnI GCTCC 3 cut(s) 307, 394, 402
Lsp1109I GCAGC 2 cut(s) 670, 869
LweI GCATC 2 cut(s) 858, 873
MabI ACCWGGT 1 cut(s) 62
MaeI CTAG 4 cut(s) 516, 575, 587, 654
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 461, 885, 1040
MboI GATC 3 cut(s) 459, 883, 1038
MboII GAAGA 1 cut(s) 435
MhlI GDGCHC 3 cut(s) 304, 399, 523
MluCI AATT 7 cut(s) 83, 147, 228, 628, 707, 902, 908
MlyI GAGTC 1 cut(s) 1115
MmeI TCCRAC 2 cut(s) 595, 1089
Mph1103I ATGCAT 1 cut(s) 677
MseI TTAA 6 cut(s) 227, 353, 542, 869, 974, 1061
MspA1I CMGCKG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 64, 726
Mva1269I GAATGC 2 cut(s) 588, 677
MvaI CCWGG 2 cut(s) 64, 726
MwoI GCNNNNNNNGC 6 cut(s) 184, 403, 805, 837, 846, 861
NcoI CCATGG 1 cut(s) 314
NdeII GATC 3 cut(s) 459, 883, 1038
NmeAIII GCCGAG 1 cut(s) 649
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 4 cut(s) 262, 623, 808, 1153
NspV TTCGAA 1 cut(s) 693
PaeI GCATGC 1 cut(s) 808
PagI TCATGA 1 cut(s) 763
PctI GAATGC 2 cut(s) 588, 677
PfeI GAWTC 5 cut(s) 208, 408, 480, 760, 1004
PkrI GCNGC 2 cut(s) 685, 859
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 62, 724
PspGI CCWGG 2 cut(s) 62, 724
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 2 cut(s) 238, 324
RsaNI GTAC 2 cut(s) 237, 323
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 6 cut(s) 227, 353, 542, 869, 974, 1061
SatI GCNGC 2 cut(s) 684, 858
Sau3AI GATC 3 cut(s) 459, 883, 1038
SchI GAGTC 1 cut(s) 1115
ScrFI CCNGG 2 cut(s) 64, 726
SduI GDGCHC 3 cut(s) 304, 399, 523
SexAI ACCWGGT 1 cut(s) 62
SfaNI GCATC 2 cut(s) 858, 873
SfcI CTRYAG 3 cut(s) 105, 212, 942
SfuI TTCGAA 1 cut(s) 693
SphI GCATGC 1 cut(s) 808
Sse9I AATT 7 cut(s) 83, 147, 228, 628, 707, 902, 908
SsiI CCGC 5 cut(s) 52, 185, 295, 305, 1134
SspMI CTAG 4 cut(s) 516, 575, 587, 654
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 62, 724
StyI CCWWGG 2 cut(s) 249, 314
TaaI ACNGT 4 cut(s) 32, 745, 898, 1073
TaqI TCGA 5 cut(s) 126, 436, 693, 1053, 1116
TasI AATT 7 cut(s) 83, 147, 228, 628, 707, 902, 908
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 5 cut(s) 208, 408, 480, 760, 1004
Tru1I TTAA 6 cut(s) 227, 353, 542, 869, 974, 1061
Tru9I TTAA 6 cut(s) 227, 353, 542, 869, 974, 1061
TscAI CASTG 2 cut(s) 304, 903
TseI GCWGC 2 cut(s) 683, 857
TspDTI ATGAA 2 cut(s) 105, 720
TspRI CASTG 2 cut(s) 304, 903
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 628
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 4 cut(s) 262, 623, 808, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmiI GTMKAC 2 cut(s) 915, 1146
XspI CTAG 4 cut(s) 516, 575, 587, 654
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.