Rh6BG056000

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000144
Physical Location & Seq
Reverse (-)
9014278 .. 9015139
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG056000.1

Sequence Viewer

Length: 862 bp
ATGTCTACACGGGATGGTTATAATTCTTCAAGCAATTTTACTGTAGCTGCAATTTTCGATGATCGGAATACTTTATGTTTGTGCAGACCCGGAGACGAGAAATGGAGTGTCTTCCCGGTATTAGACTACCTCATTGATATATTGTTTTCTTCTGGCACGTTATATGCTTTAGTTTTGAGTGAACAAAATGATGGCGGCGTCGCACCTACTTGCCTCTTAAACTTTGCATATCATGATGCTGTACACTTGAAGTTGAAGTTGGTATATGATAAACACCAAAGCAAGAATAACATCATTGATGAATATCATAGTAACTATAAGATAGCTTCCAATGCATCATACGCATCAATGTTGTTAGAATCAACCAGCAAGGAAGTTCTGTTAATCCATCAAATGTTTGATTATGTTTTGAAGACAACAAATGATGGTGATGAACAAATTAATGAGAATGATGGCGGTCAAGGCCTAAACAATGATGGTGATGAGGAAGACATTGATGGTGTTGAAGGGAATAATGACGATGAAGGTGGTGGTGATGACAGTGATGATGAACAAGTAGTCGATGAGAATACTAGAAACATACGTCATCGCACAAGAAGTTTTAGAACATACAAGATTGATCCATACAACAAGAATTTTCATATGATGCAATCCTTGGGTGACCAATTGTTATTTTGTGGAAACGATGATGCTTTCTCCCTTCCTGCTAGTAACATCAAACAAATAGAAAATAATTGCATCTACTTTGCAATGAATATGTACCCAAAAAACGTGGACTTGGAATGGATTGCAAAGACGTATATGTCTAATGAGTTTGGCATATTCTACTTAGATGGTCAAAGAACTGAGAGGCCATTTCAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

287

Amino Acids

32.66

Weight (kDa)

4.42

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 9 - 268 1.1e-20 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AasI GACNNNNNNGTC 1 cut(s) 802
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 195, 456
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 1 cut(s) 634
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 243, 761
AgsI TTSAA 6 cut(s) 30, 250, 256, 412, 506, 860
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 2 cut(s) 47, 326
AluI AGCT 2 cut(s) 47, 326
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 614
AoxI GGCC 2 cut(s) 463, 851
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 634
AseI ATTAAT 1 cut(s) 441
AsuC2I CCSGG 2 cut(s) 90, 116
AsuHPI GGTGA 4 cut(s) 440, 491, 545, 671
BbsI GAAGAC 3 cut(s) 103, 419, 495
BbvI GCAGC 1 cut(s) 34
BccI CCATC 8 cut(s) 8, 185, 396, 419, 446, 470, 491, 827
BcnI CCSGG 2 cut(s) 90, 116
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 573, 708
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 48, 196
BlsI GCNGC 2 cut(s) 49, 197
Bme1390I CCNGG 2 cut(s) 90, 116
BmrFI CCNGG 2 cut(s) 90, 116
BmsI GCATC 6 cut(s) 226, 344, 353, 636, 679, 747
BpiI GAAGAC 3 cut(s) 103, 419, 495
BpuMI CCSGG 2 cut(s) 90, 116
BsaBI GATNNNNATC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 303
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 1 cut(s) 837
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 465, 853
BsiSI CCGG 2 cut(s) 90, 116
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 2 cut(s) 465, 853
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 61, 619
BspACI CCGC 2 cut(s) 195, 456
BspANI GGCC 2 cut(s) 465, 853
BspCNI CTCAG 1 cut(s) 838
BspHI TCATGA 1 cut(s) 232
BspPI GGATC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 756
BsrGI TGTACA 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 2 cut(s) 61, 619
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 43, 542
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 829, 846
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 64, 622
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 61, 619
BstMWI GCNNNNNNNGC 3 cut(s) 332, 341, 462
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 88, 114
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 3 cut(s) 103, 419, 495
BsuRI GGCC 2 cut(s) 465, 853
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 547
CciI TCATGA 1 cut(s) 232
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 242, 760
CspCI CAANNNNNGTGG 2 cut(s) 753, 788
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 47, 326, 465, 853
CviKI_1 RGCY 4 cut(s) 47, 326, 465, 853
CviQI GTAC 2 cut(s) 242, 760
DdeI CTNAG 2 cut(s) 829, 846
DpnI GATC 2 cut(s) 63, 621
DpnII GATC 2 cut(s) 61, 619
DrdI GACNNNNNNGTC 1 cut(s) 802
DseDI GACNNNNNNGTC 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 654
Eco147I AGGCCT 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 236
FatI CATG 1 cut(s) 232
FauNDI CATATG 1 cut(s) 642
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 48, 196
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 48, 196
FspBI CTAG 2 cut(s) 573, 708
GluI GCNGC 2 cut(s) 48, 196
HaeIII GGCC 2 cut(s) 465, 853
HapII CCGG 2 cut(s) 90, 116
HgaI GACGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 236
HinfI GANTC 1 cut(s) 359
HpaII CCGG 2 cut(s) 90, 116
HphI GGTGA 4 cut(s) 440, 491, 545, 671
Hpy166II GTNNAC 4 cut(s) 6, 182, 244, 775
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 4 cut(s) 6, 182, 244, 775
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 500, 518, 710
HpyCH4III ACNGT 2 cut(s) 43, 542
HpyCH4IV ACGT 4 cut(s) 158, 583, 771, 797
HpyCH4V TGCA 8 cut(s) 50, 84, 227, 335, 649, 738, 749, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 341, 462
HpyF3I CTNAG 2 cut(s) 829, 846
HpySE526I ACGT 4 cut(s) 158, 583, 771, 797
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 2 cut(s) 61, 619
LpnPI CCDG 5 cut(s) 103, 129, 138, 379, 717
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 6 cut(s) 226, 344, 353, 636, 679, 747
MaeI CTAG 2 cut(s) 573, 708
MaeII ACGT 4 cut(s) 158, 583, 771, 797
MaeIII GTNAC 3 cut(s) 311, 659, 710
MalI GATC 2 cut(s) 63, 621
MboI GATC 2 cut(s) 61, 619
MboII GAAGA 5 cut(s) 18, 103, 141, 424, 500
MfeI CAATTG 1 cut(s) 665
MluCI AATT 7 cut(s) 22, 34, 51, 438, 634, 665, 733
MnlI CCTC 4 cut(s) 140, 224, 478, 843
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 3 cut(s) 218, 383, 441
MspI CCGG 2 cut(s) 90, 116
MspR9I CCNGG 2 cut(s) 90, 116
MunI CAATTG 1 cut(s) 665
MwoI GCNNNNNNNGC 3 cut(s) 332, 341, 462
NciI CCSGG 2 cut(s) 90, 116
NdeI CATATG 1 cut(s) 642
NdeII GATC 2 cut(s) 61, 619
NlaIII CATG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 659
NsiI ATGCAT 1 cut(s) 337
PagI TCATGA 1 cut(s) 232
PceI AGGCCT 1 cut(s) 465
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 49, 197
PshBI ATTAAT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 21
PspEI GGTNACC 1 cut(s) 659
RsaI GTAC 2 cut(s) 243, 761
RsaNI GTAC 2 cut(s) 242, 760
SaqAI TTAA 3 cut(s) 218, 383, 441
SatI GCNGC 2 cut(s) 48, 196
Sau3AI GATC 2 cut(s) 61, 619
ScrFI CCNGG 2 cut(s) 90, 116
SetI ASST 9 cut(s) 49, 132, 161, 208, 328, 529, 586, 774, 800
SfaNI GCATC 6 cut(s) 226, 344, 353, 636, 679, 747
SfcI CTRYAG 1 cut(s) 42
Sse9I AATT 7 cut(s) 22, 34, 51, 438, 634, 665, 733
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 2 cut(s) 195, 456
SspMI CTAG 2 cut(s) 573, 708
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 88, 114
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 43, 542
TaiI ACGT 4 cut(s) 161, 586, 774, 800
TaqI TCGA 2 cut(s) 57, 561
TasI AATT 7 cut(s) 22, 34, 51, 438, 634, 665, 733
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 218, 383, 441
Tru9I TTAA 3 cut(s) 218, 383, 441
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 6 cut(s) 315, 447, 537, 564, 629, 767
TspRI CASTG 1 cut(s) 547
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 573, 708
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.