Rroxscaffold_6G00406660

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000144
Physical Location & Seq
Forward (+)
29176575 .. 29177714
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406660.1

Sequence Viewer

Length: 1140 bp
ATGGAGTACATTCTACAACGTCTTAGTTTATGGGATCGAATACAGTTAAGGATGGTGTCCAAGTCTTGGAGGTCAGTAGCTATGCGAAGAGATATTCGTAGCTCTCCAACTGAAACGCCCTGGTTACTATTGCCTCCATCTGAATCACCAAATCTCAGCAATAACAACTACATAAGCTTTTTCAGCCTTTCTGATGGCAAAGTTCACAAACTGACGCTGCCTAGGGCATTTGGAGGAGGATGGGTTCATGGGTCTTCTAAAGGTTGGTTGGTTATGGTCAAGGGTGCATACTCTAAAATGTTTTTACTAAACCCTATTTCAGGTGCCCAACAGGAACTTCCATCGTTAAAAACTGTCTTTCCATACTATGCAATTCTCAAAGAGTTGAAAGCAGAGTTGGAGGGCACACATGTCTTGGACAGTTTGTGTAATCAAGTTGTGTTATCTACCTCGGATATTTATTCAGATGATTGTATTGTAGCAGCAATTTTTAGGGATCATATACTGGCTTTGTGCAAACCTGGAGACAAAAGATGGAGGAAAGTCTTGGACTTCAAGGAATCAGATAGGGCGAAGCTTTCTGAAATATTGTTTTCTTGTGGTATGCTATATGCCTTGGTTGATCGTGATGGAAATAACGAGCTTGTTATTCCAGCTCGAACCGAAATCTTTGGAGGACACAAGCAGGAAGTAAAGTTCGTCTATGATAGATATCCACTACGTTTATCTACTATGCATTGGCAATGCCAACCACACTTGTTAGAATCAACCTCCAAAAATGAAGTCTTGTTGATCCATCAAATCCAAAATATTTATGGGGAAATAATATCGTTTATAGTATACAAGATGGACGGTGAGACTGAAAACTTCCATGAGGTACAACACTTGGGAGAACAAATAATACTCTTATCAGATTTCGGATCCTCGTCGATCGCCTCAGCTGCATTGAAAGGGAATCGCATTTGTTTTGCAACACATGCTTTTAACAATCAGCAATTAAACCTTGCTATGGGTATATTCTACCTAAGCAGTGGAAGAATTAAGCAAAATATTTGTTTTGTCGACAGATCAGTAATGCTACGGCTGGGCAGTTCAGTTGCTAGAGACCGAGGGACTTGTTGGTTTACTCCGAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

379

Amino Acids

43.09

Weight (kDa)

8.68

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 31 7.5e-06 F-box domain
Beta-prop_KIB1-4 PF03478 60 - 326 1.7e-37 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 2 cut(s) 840, 1062
AclWI GGATC 5 cut(s) 42, 504, 787, 915, 928
AfaI GTAC 2 cut(s) 8, 879
AfiI CCNNNNNNNGG 3 cut(s) 66, 320, 1009
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 388, 556, 949
AjnI CCWGG 2 cut(s) 119, 520
AjuI GAANNNNNNNTTGG 4 cut(s) 321, 353, 380, 412
AloI GAACNNNNNNTCC 4 cut(s) 228, 260, 680, 712
AluBI AGCT 7 cut(s) 80, 102, 177, 577, 643, 656, 941
AluI AGCT 7 cut(s) 80, 102, 177, 577, 643, 656, 941
Alw26I GTCTC 3 cut(s) 519, 851, 1098
AlwI GGATC 5 cut(s) 42, 504, 787, 915, 928
ApeKI GCWGC 3 cut(s) 217, 482, 941
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
AspA2I CCTAGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 138, 866
AvrII CCTAGG 1 cut(s) 221
BaeGI GKGCMC 2 cut(s) 328, 407
BamHI GGATCC 1 cut(s) 920
BanI GGYRCC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 937
BbvI GCAGC 3 cut(s) 204, 494, 928
BccI CCATC 9 cut(s) 46, 145, 188, 234, 349, 528, 623, 804, 841
BceAI ACGGC 1 cut(s) 1097
BciT130I CCWGG 2 cut(s) 121, 522
BcoDI GTCTC 3 cut(s) 519, 851, 1098
BfaI CTAG 2 cut(s) 222, 1101
BisI GCNGC 3 cut(s) 218, 483, 942
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 3 cut(s) 219, 484, 943
Bme1390I CCNGG 2 cut(s) 121, 522
BmiI GGNNCC 2 cut(s) 325, 922
BmrFI CCNGG 2 cut(s) 121, 522
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 2 cut(s) 937, 1025
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 5 cut(s) 119, 221, 450, 615, 1108
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 320, 1009
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 749
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 2 cut(s) 121, 522
BseDI CCNNGG 5 cut(s) 119, 221, 450, 615, 1108
BseGI GGATG 2 cut(s) 57, 245
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 3 cut(s) 66, 320, 1009
BseMI GCAATG 1 cut(s) 749
BseMII CTCAG 2 cut(s) 169, 951
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 249
BseSI GKGCMC 2 cut(s) 328, 407
BseXI GCAGC 3 cut(s) 204, 494, 928
BseYI CCCAGC 1 cut(s) 1084
Bsh1285I CGRYCG 1 cut(s) 933
BshNI GGYRCC 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 933
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 3 cut(s) 66, 320, 1009
BsmAI GTCTC 3 cut(s) 519, 851, 1098
BsmFI GGGAC 1 cut(s) 1126
Bso31I GGTCTC 1 cut(s) 1098
Bsp1286I GDGCHC 2 cut(s) 328, 407
Bsp143I GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
BspCNI CTCAG 2 cut(s) 168, 950
BspLI GGNNCC 2 cut(s) 325, 922
BspPI GGATC 5 cut(s) 42, 504, 787, 915, 928
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 1098
BsrDI GCAATG 1 cut(s) 749
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 5 cut(s) 119, 221, 450, 615, 1108
BssMI GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
BssNAI GTATAC 1 cut(s) 841
BssT1I CCWWGG 2 cut(s) 221, 615
Bst1107I GTATAC 1 cut(s) 841
Bst2UI CCWGG 2 cut(s) 121, 522
Bst4CI ACNGT 4 cut(s) 45, 355, 422, 854
Bst6I CTCTTC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 977
BstDEI CTNAG 4 cut(s) 23, 155, 937, 1025
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 57, 245
BstKTI GATC 7 cut(s) 37, 499, 625, 795, 923, 933, 1070
BstMAI GTCTC 3 cut(s) 519, 851, 1098
BstMBI GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 3 cut(s) 183, 941, 977
BstNI CCWGG 2 cut(s) 121, 522
BstNSI RCATGY 2 cut(s) 413, 980
BstSCI CCNGG 2 cut(s) 119, 520
BstSLI GKGCMC 2 cut(s) 328, 407
BstV1I GCAGC 3 cut(s) 204, 494, 928
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 841
BtsCI GGATG 2 cut(s) 57, 245
BtsI GCAGTG 1 cut(s) 1036
BtsIMutI CAGTG 1 cut(s) 1036
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 7, 878
CviAII CATG 4 cut(s) 248, 410, 872, 977
CviQI GTAC 2 cut(s) 7, 878
DdeI CTNAG 4 cut(s) 23, 155, 937, 1025
DpnI GATC 7 cut(s) 36, 498, 624, 794, 922, 932, 1069
DpnII GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 221, 615
Eco31I GGTCTC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 713
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 119, 520
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 221, 615
EcoT22I ATGCAT 1 cut(s) 738
ErhI CCWWGG 2 cut(s) 221, 615
FaeI CATG 4 cut(s) 251, 413, 875, 980
FaqI GGGAC 1 cut(s) 1126
FatI CATG 4 cut(s) 247, 409, 871, 976
FblI GTMKAC 2 cut(s) 840, 1062
Fnu4HI GCNGC 3 cut(s) 218, 483, 942
FokI GGATG 2 cut(s) 64, 252
Fsp4HI GCNGC 3 cut(s) 218, 483, 942
FspBI CTAG 2 cut(s) 222, 1101
GluI GCNGC 3 cut(s) 218, 483, 942
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 1 cut(s) 543
HgaI GACGC 1 cut(s) 223
Hin1II CATG 4 cut(s) 251, 413, 875, 980
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 2 cut(s) 175, 575
HinfI GANTC 4 cut(s) 143, 560, 764, 955
HphI GGTGA 2 cut(s) 138, 866
Hpy166II GTNNAC 4 cut(s) 205, 841, 1063, 1125
Hpy188I TCNGA 9 cut(s) 142, 193, 454, 466, 565, 583, 913, 920, 1131
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 4 cut(s) 205, 841, 1063, 1125
Hpy99I CGWCG 1 cut(s) 931
HpyCH4III ACNGT 4 cut(s) 45, 355, 422, 854
HpyCH4IV ACGT 2 cut(s) 19, 721
HpyCH4V TGCA 6 cut(s) 287, 371, 516, 736, 944, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 941, 977
HpyF3I CTNAG 4 cut(s) 23, 155, 937, 1025
HpySE526I ACGT 2 cut(s) 19, 721
Hsp92II CATG 4 cut(s) 251, 413, 875, 980
Kzo9I GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
Lsp1109I GCAGC 3 cut(s) 204, 494, 928
MaeI CTAG 2 cut(s) 222, 1101
MaeII ACGT 2 cut(s) 19, 721
MaeIII GTNAC 1 cut(s) 123
MalI GATC 7 cut(s) 36, 498, 624, 794, 922, 932, 1069
MboI GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
MboII GAAGA 3 cut(s) 99, 246, 1047
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 2 cut(s) 328, 407
MluCI AATT 4 cut(s) 372, 486, 995, 1038
MmeI TCCRAC 2 cut(s) 131, 378
Mph1103I ATGCAT 1 cut(s) 738
MseI TTAA 5 cut(s) 47, 347, 984, 998, 1041
MspA1I CMGCKG 1 cut(s) 941
MspR9I CCNGG 2 cut(s) 121, 522
MvaI CCWGG 2 cut(s) 121, 522
MwoI GCNNNNNNNGC 3 cut(s) 183, 941, 977
NdeII GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
NlaIII CATG 4 cut(s) 251, 413, 875, 980
NlaIV GGNNCC 2 cut(s) 325, 922
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 2 cut(s) 413, 980
PciI ACATGT 1 cut(s) 409
PfeI GAWTC 4 cut(s) 143, 560, 764, 955
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 3 cut(s) 219, 484, 943
Ple19I CGATCG 1 cut(s) 933
PscI ACATGT 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 119, 520
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 2 cut(s) 119, 520
PspN4I GGNNCC 2 cut(s) 325, 922
PsrI GAACNNNNNNTAC 2 cut(s) 885, 917
PsuI RGATCY 1 cut(s) 920
PvuI CGATCG 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 2 cut(s) 8, 879
RsaNI GTAC 2 cut(s) 7, 878
SalI GTCGAC 1 cut(s) 1061
SaqAI TTAA 5 cut(s) 47, 347, 984, 998, 1041
SatI GCNGC 3 cut(s) 218, 483, 942
Sau3AI GATC 7 cut(s) 34, 496, 622, 792, 920, 930, 1067
ScrFI CCNGG 2 cut(s) 121, 522
SduI GDGCHC 2 cut(s) 328, 407
Sse9I AATT 4 cut(s) 372, 486, 995, 1038
SspI AATATT 3 cut(s) 588, 811, 1051
SspMI CTAG 2 cut(s) 222, 1101
StyD4I CCNGG 2 cut(s) 119, 520
StyI CCWWGG 2 cut(s) 221, 615
TaaI ACNGT 4 cut(s) 45, 355, 422, 854
TaiI ACGT 2 cut(s) 22, 724
TaqI TCGA 4 cut(s) 37, 658, 929, 1062
TaqII GACCGA 1 cut(s) 1122
TasI AATT 4 cut(s) 372, 486, 995, 1038
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 4 cut(s) 143, 560, 764, 955
Tru1I TTAA 5 cut(s) 47, 347, 984, 998, 1041
Tru9I TTAA 5 cut(s) 47, 347, 984, 998, 1041
TscAI CASTG 1 cut(s) 1036
TseI GCWGC 3 cut(s) 217, 482, 941
TspDTI ATGAA 2 cut(s) 236, 795
TspRI CASTG 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 318
XceI RCATGY 2 cut(s) 413, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmaJI CCTAGG 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 840, 1062
XspI CTAG 2 cut(s) 222, 1101
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.