Rh7AG429300

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000144
Physical Location & Seq
Forward (+)
57686078 .. 57687061
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG429300.1

Sequence Viewer

Length: 984 bp
ATGGATATATTGTTTTCTTCTGGTACTCTATATGCTTTGGTCCATAGTAGTCAAAAGAATGCTGAAGTTGCAGCTACTCGCACTTTAAAGTTTGAAGATGACGGGGTAAGATTGAAATTGAAGTTGGTCTACGACAAGCATGAAAACAAAAATGAGAGTATTGATGAAATGCATAGTGACTATATGGTGGTTTATAATGCAGAGTACCGGTCAATGTTGTCTGAATCCACCAACAGTGAAGTGTTGATAATCCATCATATGCTAGATGCATTTTGGAGGATAGAAGATGTTGAAGGCAATAATAACAATGGCGTCGGCGACGGCAATGTGATTATTAATGATCAAGACTATGATAATAATGAAGGTAATGTTGACAATAATGGTGGCGGCTTGAATATTGTTGAGGAGAATGACGAGAACATATATCAGGAGCTTGATGATGAAGCCAATAATGAAAACAATGATGGCGACCTCAGTGTTGTTGAGGCTGATGAGGAAGACATCTATGAGGAATATGATGATTATGATAATGGCGGCGACCTCAATATTATCGAGGATAATGAGGAAGATATGTATGAGGATCACGATGACAATAATCATGAAGAAGACAATCATCAGGATGAAGAAGCTATTGATGAAGAGGTGCCTCGCTATAATCCATATACGCCGGCAAGGAGTTTTAGAACATACAAGATTGACCCAGATAATGACAACTTTGTCCCGATGCAAAGCTTGGGAAACCAATTGTTATTTTTAGGAGAAGGTGGATCATTTTCTCTTCCAGCTAGTGATTTCGAAGAGAAAGAAAAGAATTGCATTTATTTTGCAACAAATTATGTTCCTCAGTTTCAATTTGCTCCCAAAACATTTATATCTCGTGAGATTGGTGTATTCTACTTCAGTGGTGAAAGAATTGAGCGGTCTTTTCCAAGTCTCGACATGTCACCGAGGTATCAACCCTCTTGGTTCACTCCATGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

327

Amino Acids

37.71

Weight (kDa)

4.05

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 222 - 298 3.7e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AasI GACNNNNNNGTC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 643
AccBSI CCGCTC 1 cut(s) 919
AccI GTMKAC 1 cut(s) 129
AciI CCGC 3 cut(s) 387, 534, 919
AclWI GGATC 2 cut(s) 588, 775
AcuI CTGAAG 2 cut(s) 84, 883
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 25, 206
AflIII ACRYGT 1 cut(s) 939
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 6 cut(s) 95, 115, 121, 293, 394, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 5 cut(s) 74, 433, 629, 732, 785
AluI AGCT 5 cut(s) 74, 433, 629, 732, 785
Alw26I GTCTC 1 cut(s) 938
AlwI GGATC 2 cut(s) 588, 775
ApeKI GCWGC 1 cut(s) 71
AseI ATTAAT 1 cut(s) 336
AsiGI ACCGGT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 917, 936
AsuII TTCGAA 1 cut(s) 795
AvaII GGWCC 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 935, 968
BanI GGYRCC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BauI CACGAG 1 cut(s) 876
BbsI GAAGAC 2 cut(s) 504, 612
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 261, 458
BceAI ACGGC 1 cut(s) 337
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 938
BfaI CTAG 2 cut(s) 263, 786
BisI GCNGC 3 cut(s) 72, 388, 535
BlsI GCNGC 3 cut(s) 73, 389, 536
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 645
BmsI GCATC 2 cut(s) 256, 714
BpiI GAAGAC 2 cut(s) 504, 612
Bpu14I TTCGAA 1 cut(s) 795
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 947
BsaWI WCCGGW 1 cut(s) 207
Bse118I RCCGGY 2 cut(s) 207, 667
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 947
BseGI GGATG 1 cut(s) 625
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 487, 857
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 643
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 2 cut(s) 208, 668
BslFI GGGAC 1 cut(s) 704
BsmAI GTCTC 1 cut(s) 938
BsmFI GGGAC 1 cut(s) 704
BsmI GAATGC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 795
Bsp143I GATC 3 cut(s) 340, 580, 767
BspACI CCGC 3 cut(s) 387, 534, 919
BspCNI CTCAG 2 cut(s) 486, 856
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 2 cut(s) 588, 775
BspT104I TTCGAA 1 cut(s) 795
BspT107I GGYRCC 1 cut(s) 643
BsrBI CCGCTC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 207, 667
BssAI RCCGGY 2 cut(s) 207, 667
BssECI CCNNGG 1 cut(s) 947
BssMI GATC 3 cut(s) 340, 580, 767
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 876
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 3 cut(s) 633, 783, 792
BstACI GRCGYC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 2 cut(s) 473, 843
BstF5I GGATG 1 cut(s) 625
BstKTI GATC 3 cut(s) 343, 583, 770
BstMAI GTCTC 1 cut(s) 938
BstMBI GATC 3 cut(s) 340, 580, 767
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 943
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 2 cut(s) 504, 612
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 241, 481, 907
Cac8I GCNNGC 1 cut(s) 669
CciI TCATGA 1 cut(s) 598
Cfr10I RCCGGY 2 cut(s) 207, 667
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 24, 205
CspAI ACCGGT 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 4 cut(s) 140, 599, 940, 975
CviJI RGCY 8 cut(s) 74, 390, 433, 446, 488, 629, 732, 785
CviKI_1 RGCY 8 cut(s) 74, 390, 433, 446, 488, 629, 732, 785
CviQI GTAC 2 cut(s) 24, 205
DdeI CTNAG 2 cut(s) 473, 843
DpnI GATC 3 cut(s) 342, 582, 769
DpnII GATC 3 cut(s) 340, 580, 767
DraI TTTAAA 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
Eam1104I CTCTTC 3 cut(s) 633, 783, 792
EarI CTCTTC 3 cut(s) 633, 783, 792
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 84, 883
EcoT22I ATGCAT 2 cut(s) 174, 271
FaeI CATG 4 cut(s) 143, 602, 943, 978
FaqI GGGAC 1 cut(s) 704
FatI CATG 4 cut(s) 139, 598, 939, 974
FauNDI CATATG 1 cut(s) 258
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 72, 388, 535
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 3 cut(s) 72, 388, 535
FspBI CTAG 2 cut(s) 263, 786
GluI GCNGC 3 cut(s) 72, 388, 535
HapII CCGG 2 cut(s) 208, 668
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 4 cut(s) 143, 602, 943, 978
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 208, 668
HphI GGTGA 2 cut(s) 917, 936
Hpy166II GTNNAC 3 cut(s) 130, 373, 969
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 8 cut(s) 344, 428, 584, 599, 617, 721, 878, 935
Hpy8I GTNNAC 3 cut(s) 130, 373, 969
Hpy99I CGWCG 2 cut(s) 317, 323
HpyAV CCTTC 3 cut(s) 287, 356, 755
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 7 cut(s) 71, 172, 200, 269, 727, 816, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 473, 843
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 4 cut(s) 143, 602, 943, 978
KroI GCCGGC 1 cut(s) 667
KroNI GCCGGC 1 cut(s) 669
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 340, 580, 767
LmnI GCTCC 2 cut(s) 430, 862
LpnPI CCDG 7 cut(s) 6, 221, 413, 602, 681, 714, 795
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 2 cut(s) 256, 714
MaeI CTAG 2 cut(s) 263, 786
MaeIII GTNAC 2 cut(s) 176, 942
MalI GATC 3 cut(s) 342, 582, 769
MbiI CCGCTC 1 cut(s) 919
MboI GATC 3 cut(s) 340, 580, 767
MfeI CAATTG 1 cut(s) 743
MluCI AATT 6 cut(s) 116, 743, 811, 832, 851, 912
Mph1103I ATGCAT 2 cut(s) 174, 271
MroNI GCCGGC 1 cut(s) 667
MseI TTAA 2 cut(s) 86, 336
MslI CAYNNNNRTG 1 cut(s) 618
MspI CCGG 2 cut(s) 208, 668
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 68
NaeI GCCGGC 1 cut(s) 669
NdeI CATATG 1 cut(s) 258
NdeII GATC 3 cut(s) 340, 580, 767
NgoMIV GCCGGC 1 cut(s) 667
NlaIII CATG 4 cut(s) 143, 602, 943, 978
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 2 cut(s) 176, 942
NsiI ATGCAT 2 cut(s) 174, 271
NspI RCATGY 1 cut(s) 943
NspV TTCGAA 1 cut(s) 795
PagI TCATGA 1 cut(s) 598
PciI ACATGT 1 cut(s) 939
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 3 cut(s) 73, 389, 536
PscI ACATGT 1 cut(s) 939
PshBI ATTAAT 1 cut(s) 336
PsiI TTATAA 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 1 cut(s) 40
RsaI GTAC 2 cut(s) 25, 206
RsaNI GTAC 2 cut(s) 24, 205
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 86, 336
SatI GCNGC 3 cut(s) 72, 388, 535
Sau3AI GATC 3 cut(s) 340, 580, 767
Sau96I GGNCC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 256, 714
SfuI TTCGAA 1 cut(s) 795
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 618
Sse9I AATT 6 cut(s) 116, 743, 811, 832, 851, 912
SsiI CCGC 3 cut(s) 387, 534, 919
SspI AATATT 2 cut(s) 397, 547
SspMI CTAG 2 cut(s) 263, 786
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 552, 795, 936
TasI AATT 6 cut(s) 116, 743, 811, 832, 851, 912
TauI GCSGC 2 cut(s) 390, 537
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 86, 336
Tru9I TTAA 2 cut(s) 86, 336
TscAI CASTG 3 cut(s) 241, 481, 907
TseFI GTSAC 2 cut(s) 176, 942
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 2 cut(s) 176, 942
TspDTI ATGAA 8 cut(s) 156, 180, 375, 456, 468, 615, 636, 651
TspRI CASTG 3 cut(s) 241, 481, 907
VpaK11BI GGWCC 1 cut(s) 40
VspI ATTAAT 1 cut(s) 336
XceI RCATGY 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 2 cut(s) 263, 786
Zsp2I ATGCAT 2 cut(s) 174, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.