Rh7BG403000

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000144
Physical Location & Seq
Forward (+)
44939568 .. 44940368
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG403000.1

Sequence Viewer

Length: 801 bp
ATGGTGGTTTATAATGCAGACTACCGGTCAATGTTGTCTGAATCCACCAACAATGAAGTGTTGATAATCCATCATATGCTAGATGCATTTTGGAGGAAAGAAGATGTTGAAGGCAATAATAACAATGGCGTCGGCGACGGCAATGTGATTATTAATGATCAAGACTATGATAATAATGAAGGTAATGTTGACGATAATGGTGGCGGCTTGAATATTGTTGAGGAGAATGACGAGAACATATATCAGGAGCATGATGATGAAGCCAATAATGAAAACAACGATGGCGACCTCAGTGTTGTTGAGGCTGATGAGGAAGACATCTATGAGGAATATGATGATTATGATAATGGCGGCGACCTCAATATTATCGAGGATAATGAGGAAGATATGCATGAGGATCACGATGACAATAATCATGAAGAAGACAATCATCAGGATGAAGAAGCTATTGATGAAGAGGTGCCTCGCTATAATCCATATATGCCGGCAAGGAGTTTTAGAACATACAAGATTGACCCAGATAATGACAACTTTGTCCCGATGCAAAGCTTGGGAAACCAATTGTTATTTTTAGGAGAAGGTGGATCATTTTCTCTTCCAGCTAGTGATTTCGAAGAAAAAGAAAAGAATTGCATTTATTTTGCAACAAATTATGTTCCTCAGTTTCAATTTGCTCCCAAAACATTTATATCTCGTGAGATTGGTGTATTCTACTTCAGTGGTGAAAGAATTGAGCGGTCTTTTCCAAGTCTCGACATGTCACCGAGGTATCAACCCTCTTGGTTCACTCCATGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

266

Amino Acids

30.78

Weight (kDa)

4.05

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 161 - 237 2.3e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AasI GACNNNNNNGTC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 736
AciI CCGC 3 cut(s) 204, 351, 736
AclWI GGATC 2 cut(s) 405, 592
AcuI CTGAAG 1 cut(s) 700
AcyI GRCGYC 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 110, 211, 668
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 3 cut(s) 446, 549, 602
AluI AGCT 3 cut(s) 446, 549, 602
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 2 cut(s) 405, 592
AseI ATTAAT 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 734, 753
AsuII TTCGAA 1 cut(s) 612
BaeI ACNNNNGTAYC 2 cut(s) 752, 785
BanI GGYRCC 1 cut(s) 460
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 2 cut(s) 321, 429
BccI CCATC 2 cut(s) 78, 275
BceAI ACGGC 1 cut(s) 154
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 2 cut(s) 80, 603
BisI GCNGC 2 cut(s) 205, 352
BlsI GCNGC 2 cut(s) 206, 353
BmeRI GACNNNNNGTC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 462
BmsI GCATC 2 cut(s) 73, 531
BpiI GAAGAC 2 cut(s) 321, 429
Bpu14I TTCGAA 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 764
BsaWI WCCGGW 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 24, 484
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 304, 674
BseRI GAGGAG 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 460
BshTI ACCGGT 1 cut(s) 24
BsiSI CCGG 2 cut(s) 25, 485
BslFI GGGAC 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 755
BsmFI GGGAC 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 157, 397, 584
BspACI CCGC 3 cut(s) 204, 351, 736
BspCNI CTCAG 2 cut(s) 303, 673
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 2 cut(s) 405, 592
BspT104I TTCGAA 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 460
BsrBI CCGCTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 24, 484
BssAI RCCGGY 2 cut(s) 24, 484
BssECI CCNNGG 1 cut(s) 764
BssMI GATC 3 cut(s) 157, 397, 584
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 693
Bst2BI CACGAG 1 cut(s) 693
Bst6I CTCTTC 2 cut(s) 450, 600
BstACI GRCGYC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 290, 660
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 3 cut(s) 160, 400, 587
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 3 cut(s) 157, 397, 584
BstNSI RCATGY 1 cut(s) 760
BstV2I GAAGAC 2 cut(s) 321, 429
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 298, 724
Cac8I GCNNGC 1 cut(s) 486
CciI TCATGA 1 cut(s) 415
Cfr10I RCCGGY 2 cut(s) 24, 484
CseI GACGC 1 cut(s) 118
CspAI ACCGGT 1 cut(s) 24
CviAII CATG 5 cut(s) 251, 392, 416, 757, 792
CviJI RGCY 6 cut(s) 207, 263, 305, 446, 549, 602
CviKI_1 RGCY 6 cut(s) 207, 263, 305, 446, 549, 602
DdeI CTNAG 2 cut(s) 290, 660
DpnI GATC 3 cut(s) 159, 399, 586
DpnII GATC 3 cut(s) 157, 397, 584
DrdI GACNNNNNNGTC 1 cut(s) 533
DriI GACNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 533
Eam1104I CTCTTC 2 cut(s) 450, 600
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 2 cut(s) 450, 600
Eco57I CTGAAG 1 cut(s) 700
EcoT22I ATGCAT 2 cut(s) 88, 393
FaeI CATG 5 cut(s) 254, 395, 419, 760, 795
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 250, 391, 415, 756, 791
FauNDI CATATG 1 cut(s) 75
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 205, 352
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 205, 352
FspBI CTAG 2 cut(s) 80, 603
GluI GCNGC 2 cut(s) 205, 352
HapII CCGG 2 cut(s) 25, 485
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 5 cut(s) 254, 395, 419, 760, 795
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 25, 485
HphI GGTGA 2 cut(s) 734, 753
Hpy166II GTNNAC 2 cut(s) 190, 786
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 8 cut(s) 161, 245, 401, 416, 434, 538, 695, 752
Hpy8I GTNNAC 2 cut(s) 190, 786
Hpy99I CGWCG 2 cut(s) 134, 140
HpyAV CCTTC 3 cut(s) 104, 173, 572
HpyCH4V TGCA 6 cut(s) 17, 86, 391, 544, 633, 644
HpyF3I CTNAG 2 cut(s) 290, 660
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 5 cut(s) 254, 395, 419, 760, 795
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 157, 397, 584
LmnI GCTCC 2 cut(s) 247, 679
LpnPI CCDG 6 cut(s) 38, 230, 419, 498, 531, 612
LweI GCATC 2 cut(s) 73, 531
MaeI CTAG 2 cut(s) 80, 603
MaeIII GTNAC 1 cut(s) 759
MalI GATC 3 cut(s) 159, 399, 586
MbiI CCGCTC 1 cut(s) 736
MboI GATC 3 cut(s) 157, 397, 584
MboII GAAGA 9 cut(s) 113, 326, 395, 431, 434, 452, 467, 587, 626
MfeI CAATTG 1 cut(s) 560
MluCI AATT 5 cut(s) 560, 628, 649, 668, 729
Mph1103I ATGCAT 2 cut(s) 88, 393
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 255, 435
MspI CCGG 2 cut(s) 25, 485
MunI CAATTG 1 cut(s) 560
NaeI GCCGGC 1 cut(s) 486
NdeI CATATG 1 cut(s) 75
NdeII GATC 3 cut(s) 157, 397, 584
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 5 cut(s) 254, 395, 419, 760, 795
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 759
NsiI ATGCAT 2 cut(s) 88, 393
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 1 cut(s) 612
PagI TCATGA 1 cut(s) 415
PciI ACATGT 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 24
PkrI GCNGC 2 cut(s) 206, 353
PscI ACATGT 1 cut(s) 756
PshBI ATTAAT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 462
RseI CAYNNNNRTG 2 cut(s) 255, 435
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 205, 352
Sau3AI GATC 3 cut(s) 157, 397, 584
SetI ASST 9 cut(s) 184, 291, 360, 448, 462, 551, 583, 604, 770
SfaNI GCATC 2 cut(s) 73, 531
SfuI TTCGAA 1 cut(s) 612
SmiMI CAYNNNNRTG 2 cut(s) 255, 435
Sse9I AATT 5 cut(s) 560, 628, 649, 668, 729
SsiI CCGC 3 cut(s) 204, 351, 736
SspI AATATT 2 cut(s) 214, 364
SspMI CTAG 2 cut(s) 80, 603
TaqI TCGA 3 cut(s) 369, 612, 753
TasI AATT 5 cut(s) 560, 628, 649, 668, 729
TauI GCSGC 2 cut(s) 207, 354
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 298, 724
TseFI GTSAC 1 cut(s) 759
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 7 cut(s) 69, 192, 273, 285, 432, 453, 468
TspRI CASTG 2 cut(s) 298, 724
VspI ATTAAT 1 cut(s) 153
XceI RCATGY 1 cut(s) 760
XspI CTAG 2 cut(s) 80, 603
Zsp2I ATGCAT 2 cut(s) 88, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.