RLG00000003555

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000144
Physical Location & Seq
Forward (+)
49969725 .. 49970809
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003555

Sequence Viewer

Length: 783 bp
ATGAACAAGCTTCCATATTTCAAAGGGTTTGTTGAACTAATAGGACCTGATCATGAAGCAGGTCTTTTCTTTGATCACATTATATTATCTAGCTCTGATATTTCAAATTTTATTGTTGCTGCAGCTATCAATTGTGAATTGGGTTTGTGCAGACTCGGAAACAAAAGCTGCAGTGTCTCCAAGATCTTGGATGAAAATGAGTATTTTAGCAACATATTGTTTTCTTGTGGAATGCTATATCCCTTGGTCAATAATGATGACATGGATGGAGTTATAGTAGCTCGGACTTTAGTGTTTGAAGATCATGAAGTGGAATTGAAGTTGGTCTATGACAAGAGAGAAAAAATATTCAATGATGATATGGAAAACAATGAGGGTGAAGATGAAGGCGACAACAACAATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGATGAGGAGGGTGGCAATGGTGATGATGAGGAAGGCTCTTTCAAAATATACAAGATTGGATCCGAGAAAGACAACCTTATTAGTATAGATAATTTGGGGGACCGAATACTTATTTTGGAAGACCAAGGTTCTTCGTTGTCCCTCTCAACAAGTGACTTCGAAGAGTTAGAAGGAAATTGCATGTATTTTGGGTCAGATAATGGAAACAACAAGTTAGATCCTCTAGAAACCCTTAAACCAAATATAGCGCGCGACTTAGACGCCTTCTACTTAATAGATGGAGCAATTGAGCCATCATTTCCAAATCTCAACATGCCAATACAGTTGTTCACTCCAATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

261

Amino Acids

29.23

Weight (kDa)

4.05

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 22 - 212 1e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AccII CGCG 2 cut(s) 688, 690
AclWI GGATC 3 cut(s) 492, 505, 650
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 699
AgsI TTSAA 7 cut(s) 22, 35, 105, 299, 319, 352, 481
AluBI AGCT 5 cut(s) 10, 93, 125, 168, 281
AluI AGCT 5 cut(s) 10, 93, 125, 168, 281
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 3 cut(s) 492, 505, 650
ApeKI GCWGC 3 cut(s) 119, 122, 168
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 2 cut(s) 688, 690
AspS9I GGNCC 2 cut(s) 44, 538
AsuHPI GGTGA 2 cut(s) 389, 470
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 2 cut(s) 44, 538
BamHI GGATCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 3 cut(s) 106, 134, 155
BccI CCATC 3 cut(s) 260, 710, 739
BclI TGATCA 2 cut(s) 49, 73
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 90, 662
BfmI CTRYAG 2 cut(s) 120, 169
BfuAI ACCTGC 1 cut(s) 50
BglII AGATCT 1 cut(s) 183
BisI GCNGC 3 cut(s) 120, 123, 169
BlsI GCNGC 3 cut(s) 121, 124, 170
Bme18I GGWCC 2 cut(s) 44, 538
BmgT120I GGNCC 2 cut(s) 44, 538
BmiI GGNNCC 2 cut(s) 499, 539
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 458, 490
Bpu14I TTCGAA 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 243, 562
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse3DI GCAATG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 243, 562
BseGI GGATG 3 cut(s) 196, 271, 445
BseMI GCAATG 1 cut(s) 460
BsePI GCGCGC 1 cut(s) 686
BseRI GAGGAG 2 cut(s) 449, 458
BseXI GCAGC 3 cut(s) 106, 134, 155
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 2 cut(s) 688, 690
BslFI GGGAC 2 cut(s) 551, 562
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 551, 562
BsmI GAATGC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 597
Bsp143I GATC 6 cut(s) 49, 73, 183, 301, 497, 655
BspFNI CGCG 2 cut(s) 688, 690
BspHI TCATGA 2 cut(s) 52, 304
BspLI GGNNCC 2 cut(s) 499, 539
BspMAI CTGCAG 2 cut(s) 124, 173
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 3 cut(s) 492, 505, 650
BspT104I TTCGAA 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 243, 562
BssHII GCGCGC 1 cut(s) 686
BssMI GATC 6 cut(s) 49, 73, 183, 301, 497, 655
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 2 cut(s) 243, 562
Bst4CI ACNGT 1 cut(s) 762
Bst6I CTCTTC 3 cut(s) 420, 426, 594
BstACI GRCGYC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 688
BstDEI CTNAG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 196, 271, 445
BstFNI CGCG 2 cut(s) 688, 690
BstHHI GCGC 2 cut(s) 688, 690
BstKTI GATC 6 cut(s) 52, 76, 186, 304, 500, 658
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 6 cut(s) 49, 73, 183, 301, 497, 655
BstNSI RCATGY 2 cut(s) 622, 754
BstSFI CTRYAG 2 cut(s) 120, 169
BstUI CGCG 2 cut(s) 688, 690
BstV1I GCAGC 3 cut(s) 106, 134, 155
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 3 cut(s) 183, 497, 655
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 3 cut(s) 183, 497, 655
BtsCI GGATG 3 cut(s) 196, 271, 445
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 688
CciI TCATGA 2 cut(s) 52, 304
CfoI GCGC 2 cut(s) 688, 690
Cfr13I GGNCC 2 cut(s) 44, 538
CseI GACGC 1 cut(s) 707
CviAII CATG 5 cut(s) 53, 262, 305, 619, 751
CviJI RGCY 7 cut(s) 10, 93, 125, 168, 281, 474, 730
CviKI_1 RGCY 7 cut(s) 10, 93, 125, 168, 281, 474, 730
DdeI CTNAG 1 cut(s) 694
DpnI GATC 6 cut(s) 51, 75, 185, 303, 499, 657
DpnII GATC 6 cut(s) 49, 73, 183, 301, 497, 655
Eam1104I CTCTTC 3 cut(s) 420, 426, 594
EarI CTCTTC 3 cut(s) 420, 426, 594
Eco130I CCWWGG 2 cut(s) 243, 562
Eco47I GGWCC 2 cut(s) 44, 538
EcoO109I RGGNCCY 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 243, 562
ErhI CCWWGG 2 cut(s) 243, 562
FaeI CATG 5 cut(s) 56, 265, 308, 622, 754
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 498, 530
FaqI GGGAC 2 cut(s) 551, 562
FatI CATG 5 cut(s) 52, 261, 304, 618, 750
FbaI TGATCA 2 cut(s) 49, 73
Fnu4HI GCNGC 3 cut(s) 120, 123, 169
FokI GGATG 3 cut(s) 203, 278, 452
Fsp4HI GCNGC 3 cut(s) 120, 123, 169
FspBI CTAG 2 cut(s) 90, 662
GlaI GCGC 2 cut(s) 687, 689
GluI GCNGC 3 cut(s) 120, 123, 169
HgaI GACGC 1 cut(s) 707
HhaI GCGC 2 cut(s) 688, 690
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 5 cut(s) 56, 265, 308, 622, 754
Hin6I GCGC 2 cut(s) 686, 688
HinP1I GCGC 2 cut(s) 686, 688
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 153
HphI GGTGA 2 cut(s) 389, 470
Hpy166II GTNNAC 1 cut(s) 768
Hpy188I TCNGA 5 cut(s) 97, 158, 285, 502, 634
Hpy188III TCNNGA 3 cut(s) 53, 305, 662
Hpy8I GTNNAC 1 cut(s) 768
HpyAV CCTTC 4 cut(s) 380, 464, 602, 712
HpyCH4III ACNGT 1 cut(s) 762
HpyCH4V TGCA 4 cut(s) 122, 150, 171, 618
HpyF3I CTNAG 1 cut(s) 694
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 5 cut(s) 56, 265, 308, 622, 754
HspAI GCGC 2 cut(s) 686, 688
Ksp22I TGATCA 2 cut(s) 49, 73
Kzo9I GATC 6 cut(s) 49, 73, 183, 301, 497, 655
LmnI GCTCC 1 cut(s) 719
LpnPI CCDG 2 cut(s) 45, 60
Lsp1109I GCAGC 3 cut(s) 106, 134, 155
MaeI CTAG 2 cut(s) 90, 662
MaeIII GTNAC 1 cut(s) 590
MalI GATC 6 cut(s) 51, 75, 185, 303, 499, 657
MboI GATC 6 cut(s) 49, 73, 183, 301, 497, 655
MfeI CAATTG 2 cut(s) 130, 723
MflI RGATCY 3 cut(s) 183, 497, 655
MluCI AATT 8 cut(s) 106, 130, 137, 314, 529, 613, 723, 774
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 9 cut(s) 367, 421, 427, 430, 436, 439, 460, 590, 669
MseI TTAA 2 cut(s) 672, 710
MunI CAATTG 2 cut(s) 130, 723
Mva1269I GAATGC 1 cut(s) 237
MvnI CGCG 2 cut(s) 688, 690
NdeII GATC 6 cut(s) 49, 73, 183, 301, 497, 655
NlaIII CATG 5 cut(s) 56, 265, 308, 622, 754
NlaIV GGNNCC 2 cut(s) 499, 539
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 2 cut(s) 622, 754
NspV TTCGAA 1 cut(s) 597
PagI TCATGA 2 cut(s) 52, 304
PauI GCGCGC 1 cut(s) 686
PctI GAATGC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 121, 124, 170
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 499, 539
PspPI GGNCC 2 cut(s) 44, 538
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 2 cut(s) 124, 173
PsuI RGATCY 3 cut(s) 183, 497, 655
PteI GCGCGC 1 cut(s) 686
SaqAI TTAA 2 cut(s) 672, 710
SatI GCNGC 3 cut(s) 120, 123, 169
Sau3AI GATC 6 cut(s) 49, 73, 183, 301, 497, 655
Sau96I GGNCC 2 cut(s) 44, 538
SchI GAGTC 1 cut(s) 147
SetI ASST 9 cut(s) 12, 49, 64, 95, 127, 170, 283, 516, 568
SfcI CTRYAG 2 cut(s) 120, 169
SfuI TTCGAA 1 cut(s) 597
SinI GGWCC 2 cut(s) 44, 538
Sse9I AATT 8 cut(s) 106, 130, 137, 314, 529, 613, 723, 774
SspI AATATT 1 cut(s) 348
SspMI CTAG 2 cut(s) 90, 662
StyI CCWWGG 2 cut(s) 243, 562
TaaI ACNGT 1 cut(s) 762
TaqI TCGA 1 cut(s) 597
TaqII GACCGA 1 cut(s) 555
TasI AATT 8 cut(s) 106, 130, 137, 314, 529, 613, 723, 774
Tru1I TTAA 2 cut(s) 672, 710
Tru9I TTAA 2 cut(s) 672, 710
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 3 cut(s) 119, 122, 168
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 6 cut(s) 17, 69, 207, 321, 399, 417
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 44, 538
XapI RAATTY 1 cut(s) 106
XbaI TCTAGA 1 cut(s) 661
XceI RCATGY 2 cut(s) 622, 754
XspI CTAG 2 cut(s) 90, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.