Rorug05G0553600

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
74148262 .. 74148875
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0553600.1

Sequence Viewer

Length: 411 bp
ATGATTCCTATCATAACAGGGAATTCTCAATTGCAATGCTTGGAAAACTTTTATGGAGATAATGTTCGGGTCAGAAATCGCACATTTCCATCAGAGCAGCAGAGCAAAATTGTAATGGCTTCTTGCAATGGGCTGGTAATTCTAGAGGTCTATTTGGATGTGGATGTCAACATCTTCATCTTCTCGGTGAGAGCTAACTCCTGGAGCAGTTGTAAAGGCTCTCATTGGACATTCCCCAGAATTGGCTGGTGGAGGCACTGCGGGGCTCTTTCAAATGACGCAATCCATTGGGTTGTTAACTTCTTTGAATATGATGTGGATGGGAGTATGATTGAAGAATTCTGTATCTATGCTTTTGATTTGGCAAGTGAAGAGTTACGACTAATGCCTGTTCCTGGTTGTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.62

Weight (kDa)

5.04

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 22, 338
AfiI CCNNNNNNNGG 2 cut(s) 242, 395
AgsI TTSAA 3 cut(s) 273, 308, 335
AjnI CCWGG 2 cut(s) 200, 394
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 2 cut(s) 22, 338
AsuHPI GGTGA 1 cut(s) 199
BanII GRGCYC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 97, 314
BciT130I CCWGG 2 cut(s) 202, 396
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 202, 396
BmrFI CCNGG 2 cut(s) 202, 396
BpmI CTGGAG 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 8
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 395
Bse3DI GCAATG 2 cut(s) 41, 133
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 202, 396
BseGI GGATG 3 cut(s) 163, 169, 325
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 242, 395
BseMI GCAATG 2 cut(s) 41, 133
BseXI GCAGC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 242, 395
Bsp1286I GDGCHC 1 cut(s) 268
BspACI CCGC 1 cut(s) 261
BsrDI GCAATG 2 cut(s) 41, 133
Bst2UI CCWGG 2 cut(s) 202, 396
Bst6I CTCTTC 1 cut(s) 366
BstF5I GGATG 3 cut(s) 163, 169, 325
BstNI CCWGG 2 cut(s) 202, 396
BstSCI CCNGG 2 cut(s) 200, 394
BstV1I GCAGC 1 cut(s) 109
BtsCI GGATG 3 cut(s) 163, 169, 325
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
CseI GACGC 1 cut(s) 287
CviJI RGCY 6 cut(s) 119, 133, 194, 219, 246, 266
CviKI_1 RGCY 6 cut(s) 119, 133, 194, 219, 246, 266
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 268
EcoRI GAATTC 2 cut(s) 22, 338
EcoRII CCWGG 2 cut(s) 200, 394
EcoT38I GRGCYC 1 cut(s) 268
FaiI YATR 5 cut(s) 14, 54, 312, 329, 351
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 3 cut(s) 170, 176, 332
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 223
HgaI GACGC 1 cut(s) 287
HincII GTYRAC 2 cut(s) 169, 298
HindII GTYRAC 2 cut(s) 169, 298
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 298
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 169, 298
Hpy188I TCNGA 2 cut(s) 74, 94
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 169, 298
HpyCH4V TGCA 2 cut(s) 34, 126
KspAI GTTAAC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 8 cut(s) 3, 119, 187, 214, 232, 250, 381, 402
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 375
MboII GAAGA 4 cut(s) 166, 172, 347, 383
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 6 cut(s) 22, 29, 108, 138, 240, 338
MnlI CCTC 2 cut(s) 139, 246
MseI TTAA 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 202, 396
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 2 cut(s) 202, 396
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 200, 394
PspGI CCWGG 2 cut(s) 200, 394
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 202, 396
SduI GDGCHC 1 cut(s) 268
SetI ASST 2 cut(s) 150, 196
Sse9I AATT 6 cut(s) 22, 29, 108, 138, 240, 338
SsiI CCGC 1 cut(s) 261
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 200, 394
TasI AATT 6 cut(s) 22, 29, 108, 138, 240, 338
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 263
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 263
XapI RAATTY 2 cut(s) 22, 338
XbaI TCTAGA 1 cut(s) 142
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.