Rroxscaffold_7G00187810

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000144
Physical Location & Seq
Reverse (-)
27262216 .. 27263115
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187810.1

Sequence Viewer

Length: 900 bp
ATGTCTAAGATGTACGGATGGCTGAATTCTGAACAATTGTTTTTACTGAATCCAATTTCAGGAGCACGGCACCAACTACCCTACTTAGTGAATTGTTCCACTATTGAGGTACTCGCGTTATCCAGCAATGATATCTCAGAATGTATAGTGGCAGTAGTTCTAAATGATGACAAAGAATTGGGATTGTGTAGACCTGGAGACAAAAGCTGGAGTGTGTTCCAAGTATTAGATGAGACCAACTATGTGGGTGACATAACCAGGTTATTGTTTTCCTCTTCGGGTACGCTATTTGCCTTGGTTGAGTACTGTAGTGGTGCCAATGGTGTTGGTGCAGTTCAGACTTTGAAACTTGGAGGAGACATTGAAGTGAAATTGCAGTTGGTCTATTACGAACAACAATGGTGGATCAATAATGAGCTGATCGATGTCTTTCCAGGAGTGGCATACCATGCATATTTGTTAGAATCAACCAACAACGAAGTTCTGTTGATCCATCATTTTTATGAGGATATGGGAGGAGAAGGCAATAATGAGGAGAATGAGGATAATAAACCAGCTGGCTTTGTTTACTTTAGGACAAAATGTTTCGGAATATATAAGATTGATGCTGACAATTGCAACTTTCTAAAGGTACAAACTTTGGGGGACCAAATATTATTTGTGGCAAACTATGGTTCTTCCTTGGCCCTTCCGGCTTCTGATTTCAAAGAGTTGCACGGGAATTGCATATATTTTGCAACAATAGGAGGCTTTAGTCCACATTTAGAATCCTGTATATCTCGTGAGATTGGCATCTTCTACCTAGATAGTGGAAGAGTCGAGCGACCCTTTCCAAGTATGATGATACCAACAGACGGCTGTGGACCGAGTTGGTTTACTCCAAGTTTACTGGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

299

Amino Acids

33.36

Weight (kDa)

4.54

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 9 - 266 1.6e-27 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 69, 314
AccI GTMKAC 1 cut(s) 190
AccII CGCG 1 cut(s) 116
AclWI GGATC 2 cut(s) 413, 484
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 5 cut(s) 14, 111, 283, 305, 633
AfiI CCNNNNNNNGG 2 cut(s) 59, 854
AgsI TTSAA 3 cut(s) 346, 365, 706
AjnI CCWGG 3 cut(s) 193, 257, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 207, 418, 557
AluI AGCT 3 cut(s) 207, 418, 557
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 3 cut(s) 192, 227, 351
AlwI GGATC 2 cut(s) 413, 484
AoxI GGCC 1 cut(s) 684
ApoI RAATTY 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 646, 685, 863
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 646, 863
BaeI ACNNNNGTAYC 2 cut(s) 101, 134
BanI GGYRCC 2 cut(s) 69, 314
BauI CACGAG 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 67
BccI CCATC 2 cut(s) 12, 501
BceAI ACGGC 2 cut(s) 83, 871
BciT130I CCWGG 3 cut(s) 195, 259, 435
BcoDI GTCTC 3 cut(s) 192, 227, 351
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 692
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 195, 259, 435
Bme18I GGWCC 2 cut(s) 646, 863
BmgT120I GGNCC 3 cut(s) 646, 685, 863
BmiI GGNNCC 3 cut(s) 71, 316, 647
BmrFI CCNGG 3 cut(s) 195, 259, 435
BmsI GCATC 2 cut(s) 595, 801
BpmI CTGGAG 2 cut(s) 216, 229
Bsa29I ATCGAT 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 294, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 854
Bse1I ACTGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 791
BseBI CCWGG 3 cut(s) 195, 259, 435
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 294, 681
BseGI GGATG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 2 cut(s) 59, 854
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 894
BseRI GAGGAG 3 cut(s) 369, 531, 548
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 686
BshNI GGYRCC 2 cut(s) 69, 314
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 2 cut(s) 59, 854
BsmAI GTCTC 3 cut(s) 192, 227, 351
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 1 cut(s) 686
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 3 cut(s) 405, 420, 489
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 71, 316, 647
BspPI GGATC 2 cut(s) 413, 484
BspT107I GGYRCC 2 cut(s) 69, 314
BspTNI GGTCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 894
BssECI CCNNGG 2 cut(s) 294, 681
BssMI GATC 3 cut(s) 405, 420, 489
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 294, 681
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 3 cut(s) 195, 259, 435
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 280, 808
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 3 cut(s) 6, 85, 136
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 3 cut(s) 408, 423, 492
BstMAI GTCTC 3 cut(s) 192, 227, 351
BstMBI GATC 3 cut(s) 405, 420, 489
BstMWI GCNNNNNNNGC 2 cut(s) 449, 692
BstNI CCWGG 3 cut(s) 195, 259, 435
BstSCI CCNGG 3 cut(s) 193, 257, 433
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 1 cut(s) 686
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 559
Cfr13I GGNCC 3 cut(s) 646, 685, 863
ClaI ATCGAT 1 cut(s) 423
CsiI ACCWGGT 1 cut(s) 257
Csp6I GTAC 5 cut(s) 13, 110, 282, 304, 632
CspCI CAANNNNNGTGG 2 cut(s) 383, 418
CviAII CATG 1 cut(s) 449
CviJI RGCY 9 cut(s) 22, 207, 418, 557, 561, 686, 695, 750, 858
CviKI_1 RGCY 9 cut(s) 22, 207, 418, 557, 561, 686, 695, 750, 858
CviQI GTAC 5 cut(s) 13, 110, 282, 304, 632
DdeI CTNAG 3 cut(s) 6, 85, 136
DpnI GATC 3 cut(s) 407, 422, 491
DpnII GATC 3 cut(s) 405, 420, 489
Eam1104I CTCTTC 2 cut(s) 280, 808
EarI CTCTTC 2 cut(s) 280, 808
Eco130I CCWWGG 2 cut(s) 294, 681
Eco31I GGTCTC 1 cut(s) 227
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 646, 863
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 193, 257, 433
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 294, 681
EcoT22I ATGCAT 1 cut(s) 454
ErhI CCWWGG 2 cut(s) 294, 681
FaeI CATG 1 cut(s) 452
FaqI GGGAC 1 cut(s) 659
FatI CATG 1 cut(s) 448
FblI GTMKAC 1 cut(s) 190
FokI GGATG 1 cut(s) 30
FspBI CTAG 1 cut(s) 803
GsuI CTGGAG 2 cut(s) 216, 229
HaeIII GGCC 1 cut(s) 686
HapII CCGG 1 cut(s) 692
Hin1II CATG 1 cut(s) 452
HinfI GANTC 4 cut(s) 49, 464, 767, 816
HpaII CCGG 1 cut(s) 692
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 6 cut(s) 191, 568, 758, 863, 876, 887
Hpy188I TCNGA 5 cut(s) 31, 139, 339, 590, 700
Hpy188III TCNNGA 2 cut(s) 60, 782
Hpy8I GTNNAC 6 cut(s) 191, 568, 758, 863, 876, 887
HpyAV CCTTC 2 cut(s) 515, 698
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 7 cut(s) 332, 376, 452, 618, 715, 726, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 692
HpyF3I CTNAG 3 cut(s) 6, 85, 136
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 3 cut(s) 405, 420, 489
LmnI GCTCC 1 cut(s) 62
LweI GCATC 2 cut(s) 595, 801
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 1 cut(s) 803
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 407, 422, 491
MboI GATC 3 cut(s) 405, 420, 489
MboII GAAGA 4 cut(s) 267, 669, 787, 825
MfeI CAATTG 2 cut(s) 35, 613
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 8 cut(s) 25, 35, 54, 91, 176, 371, 613, 721
MlyI GAGTC 1 cut(s) 825
MnlI CCTC 8 cut(s) 100, 283, 347, 499, 509, 526, 535, 740
Mph1103I ATGCAT 1 cut(s) 454
MslI CAYNNNNRTG 2 cut(s) 365, 501
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 3 cut(s) 195, 259, 435
MunI CAATTG 2 cut(s) 35, 613
MvaI CCWGG 3 cut(s) 195, 259, 435
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 449, 692
NdeII GATC 3 cut(s) 405, 420, 489
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 3 cut(s) 71, 316, 647
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 454
PfeI GAWTC 3 cut(s) 49, 464, 767
PfoI TCCNGGA 1 cut(s) 433
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
Psp6I CCWGG 3 cut(s) 193, 257, 433
PspGI CCWGG 3 cut(s) 193, 257, 433
PspN4I GGNNCC 3 cut(s) 71, 316, 647
PspPI GGNCC 3 cut(s) 646, 685, 863
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 5 cut(s) 14, 111, 283, 305, 633
RsaNI GTAC 5 cut(s) 13, 110, 282, 304, 632
RseI CAYNNNNRTG 2 cut(s) 365, 501
Sau3AI GATC 3 cut(s) 405, 420, 489
Sau96I GGNCC 3 cut(s) 646, 685, 863
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 825
ScrFI CCNGG 3 cut(s) 195, 259, 435
SduI GDGCHC 1 cut(s) 67
SetI ASST 8 cut(s) 111, 196, 209, 263, 420, 559, 633, 804
SexAI ACCWGGT 1 cut(s) 257
SfaNI GCATC 2 cut(s) 595, 801
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 646, 863
SmiMI CAYNNNNRTG 2 cut(s) 365, 501
Sse9I AATT 8 cut(s) 25, 35, 54, 91, 176, 371, 613, 721
SspI AATATT 1 cut(s) 654
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 3 cut(s) 193, 257, 433
StyI CCWWGG 2 cut(s) 294, 681
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 423, 819
TaqII GACCGA 1 cut(s) 880
TasI AATT 8 cut(s) 25, 35, 54, 91, 176, 371, 613, 721
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 3 cut(s) 49, 464, 767
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 646, 863
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 1 cut(s) 803
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.