Rh3AG195300

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000144
Physical Location & Seq
Reverse (-)
19043365 .. 19044055
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG195300.1

Sequence Viewer

Length: 480 bp
ATGAGCAATGGACAATCCCGTAAGAAACAGAAGAAGATCAATGGGCATTCCCGTAAGAAAACGAGTAAGATCAATGGGCAATCCCGTTGCAGTTGGCAGACACTGCCAGACGATATCATGGAGTACATTCTACAACGTCTGAGTTTATGGGATCGAATACAGTTAAGGATGGTGTCCAAGTCTTGGAGGTCAGTAGCTATGCGAAGAGATATTCGTAGCTCTCCAACTGAAATACCCTGGTTACTATTGCCTCCATCTGAATCACCAAATCTCAGCAATAACAACTACATAAGCTTTTTCAGCCTTTCTGATGCCAAAGTTCACAAACTGACGCTGCCTAGGGCATTTGGAGGAGGATGGGTTCATGGGTCTTCTAAAGGTTGGTTGGTTATGGTCAAGGGGATCATATACTGGCTTTGTGCAAACCTGGAGACAAAAGATGGAGGAAAGTCTTGGACTTCAAGGAATCAGATAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

159

Amino Acids

18.22

Weight (kDa)

10.47

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 70 7.8e-11 F-box domain
F-box-like PF12937 32 - 68 6.9e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AclWI GGATC 2 cut(s) 159, 410
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 1 cut(s) 462
AjnI CCWGG 2 cut(s) 236, 426
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 3 cut(s) 197, 219, 294
AluI AGCT 3 cut(s) 197, 219, 294
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 2 cut(s) 159, 410
AlwNI CAGNNNCTG 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 334
AspA2I CCTAGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 255
AvrII CCTAGG 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 321
BccI CCATC 4 cut(s) 163, 262, 351, 434
BciT130I CCWGG 2 cut(s) 238, 428
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 335
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 238, 428
BmrFI CCNGG 2 cut(s) 238, 428
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 236, 338
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 2 cut(s) 238, 428
BseDI CCNNGG 2 cut(s) 236, 338
BseGI GGATG 2 cut(s) 174, 362
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 2 cut(s) 131, 286
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 46
Bsp143I GATC 4 cut(s) 36, 69, 151, 402
BspCNI CTCAG 2 cut(s) 132, 285
BspPI GGATC 2 cut(s) 159, 410
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 236, 338
BssMI GATC 4 cut(s) 36, 69, 151, 402
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 238, 428
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 140, 272
BstF5I GGATG 2 cut(s) 174, 362
BstKTI GATC 4 cut(s) 39, 72, 154, 405
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 4 cut(s) 36, 69, 151, 402
BstMWI GCNNNNNNNGC 2 cut(s) 103, 300
BstNI CCWGG 2 cut(s) 238, 428
BstSCI CCNGG 2 cut(s) 236, 426
BstV1I GCAGC 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 174, 362
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 103
CseI GACGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 118, 365
CviJI RGCY 6 cut(s) 197, 219, 294, 303, 415, 477
CviKI_1 RGCY 6 cut(s) 197, 219, 294, 303, 415, 477
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 140, 272
DpnI GATC 4 cut(s) 38, 71, 153, 404
DpnII GATC 4 cut(s) 36, 69, 151, 402
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 338
Eco32I GATATC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 236, 426
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 121, 368
FaiI YATR 8 cut(s) 119, 148, 200, 290, 366, 392, 407, 409
FatI CATG 2 cut(s) 117, 364
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 2 cut(s) 181, 369
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 449
HgaI GACGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 121, 368
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 2 cut(s) 260, 466
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 141, 259, 310, 471
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 90, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 300
HpyF3I CTNAG 2 cut(s) 140, 272
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 2 cut(s) 121, 368
Kzo9I GATC 4 cut(s) 36, 69, 151, 402
LpnPI CCDG 6 cut(s) 120, 223, 250, 397, 413, 440
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 301
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 240
MalI GATC 4 cut(s) 38, 71, 153, 404
MboI GATC 4 cut(s) 36, 69, 151, 402
MboII GAAGA 4 cut(s) 43, 46, 216, 363
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 180, 261, 344, 347, 437
MseI TTAA 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 238, 428
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 238, 428
MwoI GCNNNNNNNGC 2 cut(s) 103, 300
NdeII GATC 4 cut(s) 36, 69, 151, 402
NlaIII CATG 2 cut(s) 121, 368
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 260, 466
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 236, 426
PspGI CCWGG 2 cut(s) 236, 426
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 4 cut(s) 36, 69, 151, 402
ScrFI CCNGG 2 cut(s) 238, 428
SetI ASST 7 cut(s) 139, 191, 199, 221, 296, 382, 429
SfaNI GCATC 1 cut(s) 301
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 236, 426
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 154
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 2 cut(s) 260, 466
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 183
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.