RchiOBHm_Chr6g0280611

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000144
Physical Location & Seq
Forward (+)
44007556 .. 44010130
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25163

Sequence Viewer

Length: 687 bp
ATGGTGGCAGCAGTTCATAATAGTGGCGAACTGGCTTTGTGTAGACCTAGAGACAAAAGCTGGAGTGTCTACCAAGTATTTGAAGAAAATGAAAATCTTGTCAAGAGAGTCAACAGAATATTGTTTTCCAGCACTGGCGTGCTATATGCCTTGGTTACAGGTAGCCGCAATGGTGGTGGTGTTGATGCAGACCGCACTTTAAAGTTCGGAGATGAGGCAGTGAAATTGAAGCTGATCTATGACATAGAGGAGTGGTGGATAGATGCCGGGGTTGATCCGGTAGGGCTTTTGTGCATGTCATACTTGTTGGAATCAACAAACAACGAAATTTTATTGATCCATCAAATTCTGAGAATGGATGTTGATGAAGATGATGAGGAATTTATGGAAGGCCATGAGGACAACGAGGATAGCAATAACAACGAAGAAGAAGAAGGGGATGATAATAACATGGAAGATAATGAGGAGCATGAGAGCATTCTTGAGTGGGCTGGACAAATCTTACTCGGTGTTTATGCTAAAGCAAAGCAACTAAACCCAGATTTTAATATTGACAAGGAAGATCCAAAGACAATATGTTTTAGGGTATACAAGATTGATCCAGACAATAACTACTATCATAAGGTAGAAAACCTAGGGGATCAAATATTTTTTGTGGCAGAGGATGGTTCTTCCTTGAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

228

Amino Acids

26.0

Weight (kDa)

4.23

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 224 3.1e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 43, 69, 588
AciI CCGC 2 cut(s) 166, 193
AclWI GGATC 5 cut(s) 269, 331, 557, 593, 648
AcsI RAATTY 3 cut(s) 327, 345, 380
AgsI TTSAA 2 cut(s) 83, 229
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 2 cut(s) 60, 232
AluI AGCT 2 cut(s) 60, 232
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 5 cut(s) 269, 331, 557, 593, 648
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 3 cut(s) 327, 345, 380
AspA2I CCTAGG 1 cut(s) 634
AsuC2I CCSGG 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 634
BbvI GCAGC 1 cut(s) 20
BccI CCATC 2 cut(s) 348, 659
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 48, 635
BisI GCNGC 2 cut(s) 9, 166
BlnI CCTAGG 1 cut(s) 634
BlsI GCNGC 2 cut(s) 10, 167
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 2 cut(s) 175, 253
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 150, 267, 634
BsaWI WCCGGW 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 36, 139
Bse3DI GCAATG 1 cut(s) 175
BseDI CCNNGG 3 cut(s) 150, 267, 634
BseGI GGATG 3 cut(s) 364, 445, 670
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 36, 139
BseRI GAGGAG 2 cut(s) 263, 479
BseXI GCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 267, 278
BsmAI GTCTC 1 cut(s) 45
BsmI GAATGC 1 cut(s) 477
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 6 cut(s) 234, 274, 336, 562, 598, 640
BspACI CCGC 2 cut(s) 166, 193
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 342
BspPI GGATC 5 cut(s) 269, 331, 557, 593, 648
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 36, 139
BssECI CCNNGG 3 cut(s) 150, 267, 634
BssMI GATC 6 cut(s) 234, 274, 336, 562, 598, 640
BssNAI GTATAC 1 cut(s) 589
BssT1I CCWWGG 2 cut(s) 150, 634
Bst1107I GTATAC 1 cut(s) 589
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 364, 445, 670
BstKTI GATC 6 cut(s) 237, 277, 339, 565, 601, 643
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 6 cut(s) 234, 274, 336, 562, 598, 640
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 3 cut(s) 364, 445, 670
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 132, 225
Cac8I GCNNGC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 4 cut(s) 295, 395, 451, 470
CviJI RGCY 7 cut(s) 35, 60, 165, 232, 286, 393, 491
CviKI_1 RGCY 7 cut(s) 35, 60, 165, 232, 286, 393, 491
DdeI CTNAG 1 cut(s) 350
DpnI GATC 6 cut(s) 236, 276, 338, 564, 600, 642
DpnII GATC 6 cut(s) 234, 274, 336, 562, 598, 640
DraI TTTAAA 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 150, 634
EcoT14I CCWWGG 2 cut(s) 150, 634
ErhI CCWWGG 2 cut(s) 150, 634
FaeI CATG 4 cut(s) 298, 398, 454, 473
FatI CATG 4 cut(s) 294, 394, 450, 469
FblI GTMKAC 3 cut(s) 43, 69, 588
Fnu4HI GCNGC 2 cut(s) 9, 166
FokI GGATG 3 cut(s) 371, 452, 677
Fsp4HI GCNGC 2 cut(s) 9, 166
FspBI CTAG 2 cut(s) 48, 635
GluI GCNGC 2 cut(s) 9, 166
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 267, 278
Hin1II CATG 4 cut(s) 298, 398, 454, 473
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 108, 311, 679
HpaII CCGG 2 cut(s) 267, 278
Hpy166II GTNNAC 4 cut(s) 44, 70, 112, 589
Hpy188I TCNGA 2 cut(s) 209, 351
Hpy188III TCNNGA 3 cut(s) 103, 482, 602
Hpy8I GTNNAC 4 cut(s) 44, 70, 112, 589
HpyAV CCTTC 2 cut(s) 383, 428
HpyCH4V TGCA 2 cut(s) 188, 294
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 4 cut(s) 298, 398, 454, 473
Kzo9I GATC 6 cut(s) 234, 274, 336, 562, 598, 640
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 175, 253
MaeI CTAG 2 cut(s) 48, 635
MaeIII GTNAC 1 cut(s) 154
MalI GATC 6 cut(s) 236, 276, 338, 564, 600, 642
MboI GATC 6 cut(s) 234, 274, 336, 562, 598, 640
MboII GAAGA 8 cut(s) 95, 380, 437, 440, 443, 467, 572, 663
MflI RGATCY 1 cut(s) 562
MluCI AATT 4 cut(s) 224, 327, 345, 380
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 7 cut(s) 208, 241, 370, 391, 400, 457, 655
MseI TTAA 2 cut(s) 200, 546
MslI CAYNNNNRTG 2 cut(s) 21, 137
MspI CCGG 2 cut(s) 267, 278
MspR9I CCNGG 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 477
NciI CCSGG 1 cut(s) 268
NdeII GATC 6 cut(s) 234, 274, 336, 562, 598, 640
NlaIII CATG 4 cut(s) 298, 398, 454, 473
NspI RCATGY 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 137
PctI GAATGC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 10, 167
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 562
RseI CAYNNNNRTG 2 cut(s) 21, 137
SaqAI TTAA 2 cut(s) 200, 546
SatI GCNGC 2 cut(s) 9, 166
Sau3AI GATC 6 cut(s) 234, 274, 336, 562, 598, 640
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 268
SetI ASST 6 cut(s) 49, 62, 163, 234, 627, 636
SfaNI GCATC 2 cut(s) 175, 253
SmiMI CAYNNNNRTG 2 cut(s) 21, 137
SmlI CTYRAG 2 cut(s) 482, 676
SmoI CTYRAG 2 cut(s) 482, 676
Sse9I AATT 4 cut(s) 224, 327, 345, 380
SsiI CCGC 2 cut(s) 166, 193
SspI AATATT 3 cut(s) 120, 550, 648
SspMI CTAG 2 cut(s) 48, 635
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 150, 634
TasI AATT 4 cut(s) 224, 327, 345, 380
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 200, 546
Tru9I TTAA 2 cut(s) 200, 546
TscAI CASTG 2 cut(s) 139, 225
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 5, 105, 381
TspRI CASTG 2 cut(s) 139, 225
XapI RAATTY 3 cut(s) 327, 345, 380
XceI RCATGY 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 634
XmiI GTMKAC 3 cut(s) 43, 69, 588
XspI CTAG 2 cut(s) 48, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.