Rmu_sc0009578.1_g000013

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009578.1
OG0000144
Physical Location & Seq
Forward (+)
57652 .. 58823
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009578.1_g000013.1.cds

Sequence Viewer

Length: 858 bp
atggttactaatgagtatagttggcagacaccacctgtagatatcatggagaacattctacaacgtgtcaattcaggagatcgaatacggttaagaaactcttgcaagtattggaagtcaattgttatgcgaagagacatccctggggctccgcatgaactcccatggttactgctgcctcaagcccccaaatgcagcaacaagtgcttgagctttgccagcctcactgagaggaaagaagtcaagttaaagcttcctaaggaagttcgaggaagctggatttatgggtcttctaaaggtcaagggccagaagacattggagaaggtgctggtgatttcaatgacattgaagaagacgacggcaatattattgtggataatcaggaaggcgttgatcaagataatgatggtgatgaaggcaatcatgagaatgatcatgaggaaggcaacttggaagctaataatcaagatggaggagaaattgatgatgttgaatatgttattgatgaagacatgcccggctttaatccacatgtcacaacaaggagttttagagtatacaagattgatccaaataataacaatttgcttccagtgcagaacttggggaaccaagtgttctttttgggagatggtggtggatctgtctctcttccggctggtaatttcccagaagtaaaaaggaattgtatttattttgcaacaaattatgtatggagtatagaattgactcctaaaacatataggtctcgtgagatcggcatattctacttagatggtgaaagaattatacggcctttttcgagtgtcagaatatcattgttgtatcaagccacatggttcactccaaatttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

285

Amino Acids

32.29

Weight (kDa)

4.66

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 563, 649
AcsI RAATTY 1 cut(s) 850
AflIII ACRYGT 2 cut(s) 64, 532
AgsI TTSAA 3 cut(s) 340, 350, 494
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 213, 253, 276, 458
AluI AGCT 4 cut(s) 213, 253, 276, 458
Alw26I GTCTC 3 cut(s) 129, 652, 753
AlwI GGATC 2 cut(s) 563, 649
AoxI GGCC 2 cut(s) 305, 794
ApeKI GCWGC 2 cut(s) 175, 195
ApoI RAATTY 1 cut(s) 850
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 344, 422, 791
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 4 cut(s) 282, 318, 360, 516
BbvI GCAGC 2 cut(s) 162, 207
BccI CCATC 4 cut(s) 401, 464, 626, 770
BceAI ACGGC 2 cut(s) 376, 809
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 2 cut(s) 394, 433
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 129, 652, 753
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 2 cut(s) 176, 196
BlsI GCNGC 2 cut(s) 177, 197
Bme1390I CCNGG 2 cut(s) 144, 519
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 150, 611
BmrFI CCNGG 2 cut(s) 144, 519
BpiI GAAGAC 4 cut(s) 282, 318, 360, 516
BpuEI CTTGAG 2 cut(s) 165, 229
BpuMI CCSGG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 142, 143, 164
Bse1I ACTGG 1 cut(s) 593
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 142, 143, 164
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 2 cut(s) 162, 207
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 2 cut(s) 307, 796
BsiSI CCGG 2 cut(s) 519, 656
BsmAI GTCTC 3 cut(s) 129, 652, 753
BsnI GGCC 2 cut(s) 307, 796
Bso31I GGTCTC 1 cut(s) 753
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 6 cut(s) 79, 394, 433, 568, 641, 756
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 307, 796
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 2 cut(s) 424, 436
BspLI GGNNCC 2 cut(s) 150, 611
BspPI GGATC 2 cut(s) 563, 649
BspTNI GGTCTC 1 cut(s) 753
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 142, 143, 164
BssMI GATC 6 cut(s) 79, 394, 433, 568, 641, 756
BssNAI GTATAC 1 cut(s) 559
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 164
Bst1107I GTATAC 1 cut(s) 559
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 2 cut(s) 127, 657
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 228, 258, 772
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 6 cut(s) 82, 397, 436, 571, 644, 759
BstMAI GTCTC 3 cut(s) 129, 652, 753
BstMBI GATC 6 cut(s) 79, 394, 433, 568, 641, 756
BstMWI GCNNNNNNNGC 3 cut(s) 204, 219, 595
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 2 cut(s) 517, 536
BstSCI CCNGG 2 cut(s) 142, 517
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 162, 207
BstV2I GAAGAC 4 cut(s) 282, 318, 360, 516
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BstZ17I GTATAC 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 307, 796
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 225, 600
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 2 cut(s) 424, 436
Cfr13I GGNCC 1 cut(s) 305
CviAII CATG 8 cut(s) 46, 155, 165, 425, 437, 514, 533, 837
DdeI CTNAG 3 cut(s) 228, 258, 772
DpnI GATC 6 cut(s) 81, 396, 435, 570, 643, 758
DpnII GATC 6 cut(s) 79, 394, 433, 568, 641, 756
Eam1104I CTCTTC 2 cut(s) 127, 657
EarI CTCTTC 2 cut(s) 127, 657
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 753
Eco32I GATATC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 8 cut(s) 49, 158, 168, 428, 440, 517, 536, 840
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 8 cut(s) 45, 154, 164, 424, 436, 513, 532, 836
FbaI TGATCA 2 cut(s) 394, 433
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 176, 196
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 176, 196
GluI GCNGC 2 cut(s) 176, 196
HaeIII GGCC 2 cut(s) 307, 796
HapII CCGG 2 cut(s) 519, 656
Hin1II CATG 8 cut(s) 49, 158, 168, 428, 440, 517, 536, 840
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 730
HpaII CCGG 2 cut(s) 519, 656
HphI GGTGA 3 cut(s) 344, 422, 791
Hpy166II GTNNAC 2 cut(s) 559, 843
Hpy188I TCNGA 1 cut(s) 812
Hpy188III TCNNGA 7 cut(s) 75, 383, 398, 425, 437, 467, 752
Hpy8I GTNNAC 2 cut(s) 559, 843
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 4 cut(s) 317, 380, 410, 437
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 105, 195, 598, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 219, 595
HpyF3I CTNAG 3 cut(s) 228, 258, 772
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 8 cut(s) 49, 158, 168, 428, 440, 517, 536, 840
Ksp22I TGATCA 2 cut(s) 394, 433
Kzo9I GATC 6 cut(s) 79, 394, 433, 568, 641, 756
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 2 cut(s) 162, 207
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 3 cut(s) 4, 168, 535
MalI GATC 6 cut(s) 81, 396, 435, 570, 643, 758
MboI GATC 6 cut(s) 79, 394, 433, 568, 641, 756
MboII GAAGA 7 cut(s) 144, 282, 323, 362, 365, 521, 644
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 724
MnlI CCTC 6 cut(s) 189, 225, 233, 263, 433, 467
MseI TTAA 3 cut(s) 92, 248, 525
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 2 cut(s) 519, 656
MspR9I CCNGG 2 cut(s) 144, 519
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 204, 219, 595
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 164
NdeII GATC 6 cut(s) 79, 394, 433, 568, 641, 756
NlaIII CATG 8 cut(s) 49, 158, 168, 428, 440, 517, 536, 840
NlaIV GGNNCC 2 cut(s) 150, 611
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 2 cut(s) 517, 536
PagI TCATGA 2 cut(s) 424, 436
PasI CCCWGGG 1 cut(s) 143
PciI ACATGT 1 cut(s) 532
PkrI GCNGC 2 cut(s) 177, 197
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PscI ACATGT 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 150, 611
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 92, 248, 525
SatI GCNGC 2 cut(s) 176, 196
Sau3AI GATC 6 cut(s) 79, 394, 433, 568, 641, 756
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 2 cut(s) 144, 519
SduI GDGCHC 1 cut(s) 151
SetI ASST 9 cut(s) 37, 67, 215, 255, 278, 301, 328, 460, 749
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 180, 208
SmoI CTYRAG 2 cut(s) 180, 208
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 142, 517
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 82, 268, 803
Tru1I TTAA 3 cut(s) 92, 248, 525
Tru9I TTAA 3 cut(s) 92, 248, 525
TscAI CASTG 2 cut(s) 232, 600
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 175, 195
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 171, 429, 522
TspRI CASTG 2 cut(s) 232, 600
XapI RAATTY 1 cut(s) 850
XceI RCATGY 2 cut(s) 517, 536
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.