Rw5G039000

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000144
Physical Location & Seq
Forward (+)
68932016 .. 68933599
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039000.1

Sequence Viewer

Length: 1584 bp
ATGATTAAAACTGTATTAGTTTGCGGTTGCTTAGTGTTTGGTGGTGTGGTGATTAAGAGACTATTCCGTCACAAGCCCTGCTGGGAGACACTACCTGACGATATCATGGAGGTTATTGTGCCACACCTGAGTGTACGTGATCGTATACGCTTAAGCCTAGTTTGCAAGCCATGGAGCTCAGTTCCTATGTGCAAAGACATCCCTAGTTCTCCTCACAAACTCCCCTGGTTAGTACTCCCTCAACCTGAATCTCAAGCTCTAACTTGCAATGATACCTCCTTAAGCTTTTACGACCTCCATGACGGCAAAGTTGTTAAGTTGGAGCTGCCTGAACCTGTTCGTGGAGCGTGGTTTCGAGGGTCTTCGAAAGGTTGGTTGATTATGATTAAGGAAAGTGAACAAAACACTACAACATTTCTGGTAAATCCAATTTCAGGAGTCCAACACCAACTTCCATCCTTGAGAACGATTCCGTCTTTCCAGAAGTTTGTAGAAACGAAGAAATGGAAACGATATGGTGCCTTTGCTTTCTTCAACTGCCTCGTGCTATCTACCTCAGATATTAATTCCGATGAATGTGTGGTAGCAGCTGCTCTTGGGTGTGCCAATGATATATTGGGTTTGTGCAGACCTGGAGACAAAGAATGGAATATCTTTCGGTTATTAGATGCAGATGAAGCTTTGACTGATTTACTGTTTTGTTCTGGCAAGCTATACGCCTTGGTTGTGAGTAATAATAAGTCCGGCGTTGTTTCAACTGCTCGTACGTTGAATTTTGGAGATCATTCGGTGGAATTGAAATTAATCTATAACGCAAGTATAAACTTCGATCCTAACTCTGAATATCATGGTAACTATGAGATCTACGTACAAGGCTATGTTGACTCATATTTGATAGAGTCTGCAACCAATAAGGAAGTATTGTTGATCCACCAAACGTTAGATGTATTTTCGAGCATAGGTGACAACAACAACGGAGAGAATGGTGGTGGCGGCAACCATGAGGAAGAGGAAGAGGAAGTGGAAGTGGAAGTCGAAGGCAATGACGGTGGTGATGACGCCAATGAGGAATGGAACAACTTGGGAGGAAATGGTGGTGATATAGGTGACTGGGGCATCAATATTGTTGAGGAAGATGATCATTATCTACGTACATATTTGAGGACAAGTGGTTTTGATGTATACAGGCTTGATCCACAGAATGACAATTTCGAAATGGTACAAAGTTTGGGGGACAAGCTATTATTTTTGTCAAACGGTGGTTCATTTTCCCTCCGGGCAAGTGATATCAAAATCAAAGACTTCAGAGGGAATTGCATTTGTTTTGCAACAAATAATTTCATGAGTTTGCATTCTTTAGAAACATATACCTGTCGGGAGATTGGTGTATTTGACTTGAATGCAAGAAGAATGCGGCGACCTTTTCCCGAGTGTAGAGGTGTCAATTCGGTCTCAACTCTGTTGGTTCACCCCAATGTTATAATGCTAGAGAGCTGCCCTTCGTATTCTTGTTGCCCTTTATTTTTATTTTATTTTTTTATGGAAAAATGGTCCGTACGGTACCCCGCCTTTTCTTCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

527

Amino Acids

59.26

Weight (kDa)

5.01

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 96 - 465 1e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1481, 1582
AasI GACNNNNNNGTC 1 cut(s) 66
Acc65I GGTACC 1 cut(s) 1560
AccB1I GGYRCC 2 cut(s) 518, 1560
AccI GTMKAC 2 cut(s) 145, 1182
AciI CCGC 4 cut(s) 24, 993, 1414, 1566
AclI AACGTT 1 cut(s) 938
AclWI GGATC 3 cut(s) 824, 922, 1187
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 1288
AcyI GRCGYC 1 cut(s) 1059
AfaI GTAC 8 cut(s) 135, 234, 766, 870, 1153, 1221, 1557, 1562
AfiI CCNNNNNNNGG 2 cut(s) 341, 434
AflII CTTAAG 2 cut(s) 151, 280
AgsI TTSAA 5 cut(s) 535, 756, 772, 799, 1399
AjnI CCWGG 2 cut(s) 224, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 9 cut(s) 177, 257, 285, 325, 590, 680, 712, 1240, 1494
AluI AGCT 9 cut(s) 177, 257, 285, 325, 590, 680, 712, 1240, 1494
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 4 cut(s) 52, 80, 630, 1456
AlwI GGATC 3 cut(s) 824, 922, 1187
Ama87I CYCGRG 1 cut(s) 1427
ApeKI GCWGC 4 cut(s) 325, 587, 590, 1494
ApoI RAATTY 1 cut(s) 772
AseI ATTAAT 2 cut(s) 564, 803
Asp700I GAANNNNTTC 1 cut(s) 336
Asp718I GGTACC 1 cut(s) 1560
AspS9I GGNCC 1 cut(s) 1551
AsuC2I CCSGG 1 cut(s) 1277
AsuHPI GGTGA 6 cut(s) 61, 974, 1064, 1109, 1118, 1460
AsuII TTCGAA 2 cut(s) 365, 1212
AvaI CYCGRG 1 cut(s) 1427
AvaII GGWCC 1 cut(s) 1551
BanI GGYRCC 2 cut(s) 518, 1560
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 312, 577, 599, 1481
BccI CCATC 1 cut(s) 463
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 226, 633
BclI TGATCA 1 cut(s) 1138
BcnI CCSGG 1 cut(s) 1277
BcoDI GTCTC 4 cut(s) 52, 80, 630, 1456
BfaI CTAG 3 cut(s) 158, 204, 1487
BfrI CTTAAG 2 cut(s) 151, 280
BglII AGATCT 1 cut(s) 861
BisI GCNGC 6 cut(s) 326, 588, 591, 994, 1415, 1495
BlsI GCNGC 6 cut(s) 327, 589, 592, 995, 1416, 1496
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 3 cut(s) 226, 633, 1277
Bme18I GGWCC 1 cut(s) 1551
BmeT110I CYCGRG 1 cut(s) 1427
BmgT120I GGNCC 1 cut(s) 1551
BmiI GGNNCC 2 cut(s) 520, 1562
BmrFI CCNGG 3 cut(s) 226, 633, 1277
BmrI ACTGGG 1 cut(s) 1120
BmsI GCATC 2 cut(s) 658, 1125
BmuI ACTGGG 1 cut(s) 1120
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 654
Bpu14I TTCGAA 2 cut(s) 365, 1212
BpuEI CTTGAG 2 cut(s) 237, 481
BpuMI CCSGG 1 cut(s) 1277
BsaAI YACGTR 3 cut(s) 137, 868, 1151
BsaBI GATNNNNATC 1 cut(s) 1143
BsaHI GRCGYC 1 cut(s) 1059
BsaI GGTCTC 1 cut(s) 1456
BsaJI CCNNGG 3 cut(s) 170, 224, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 434
Bse1I ACTGG 1 cut(s) 1115
Bse3DI GCAATG 2 cut(s) 274, 1048
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 226, 633
BseDI CCNNGG 3 cut(s) 170, 224, 720
BseGI GGATG 2 cut(s) 198, 455
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 2 cut(s) 341, 434
BseMI GCAATG 2 cut(s) 274, 1048
BseMII CTCAG 3 cut(s) 119, 192, 570
BseNI ACTGG 1 cut(s) 1115
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 4 cut(s) 312, 577, 599, 1481
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 646
BshNI GGYRCC 2 cut(s) 518, 1560
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 1427
BsiSI CCGG 2 cut(s) 744, 1276
BsiWI CGTACG 2 cut(s) 764, 1555
BslFI GGGAC 1 cut(s) 1247
BslI CCNNNNNNNGG 2 cut(s) 341, 434
BsmAI GTCTC 4 cut(s) 52, 80, 630, 1456
BsmFI GGGAC 1 cut(s) 1247
BsmI GAATGC 3 cut(s) 1351, 1405, 1416
Bso31I GGTCTC 1 cut(s) 1456
BsoBI CYCGRG 1 cut(s) 1427
Bsp119I TTCGAA 2 cut(s) 365, 1212
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 4 cut(s) 24, 993, 1414, 1566
BspCNI CTCAG 3 cut(s) 120, 191, 569
BspHI TCATGA 1 cut(s) 1341
BspLI GGNNCC 2 cut(s) 520, 1562
BspPI GGATC 3 cut(s) 824, 922, 1187
BspT104I TTCGAA 2 cut(s) 365, 1212
BspT107I GGYRCC 2 cut(s) 518, 1560
BspTI CTTAAG 2 cut(s) 151, 280
BspTNI GGTCTC 1 cut(s) 1456
BsrDI GCAATG 2 cut(s) 274, 1048
BsrI ACTGG 1 cut(s) 1115
BssECI CCNNGG 3 cut(s) 170, 224, 720
BssMI GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
BssNAI GTATAC 2 cut(s) 146, 1183
BssNI GRCGYC 1 cut(s) 1059
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 2 cut(s) 170, 720
Bst1107I GTATAC 2 cut(s) 146, 1183
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 2 cut(s) 226, 633
Bst4CI ACNGT 5 cut(s) 13, 696, 1049, 1259, 1560
Bst6I CTCTTC 2 cut(s) 1002, 1008
BstACI GRCGYC 1 cut(s) 1059
BstAFI CTTAAG 2 cut(s) 151, 280
BstBAI YACGTR 3 cut(s) 137, 868, 1151
BstBI TTCGAA 2 cut(s) 365, 1212
BstC8I GCNNGC 2 cut(s) 167, 710
BstDEI CTNAG 4 cut(s) 31, 128, 178, 556
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 198, 455
BstKTI GATC 7 cut(s) 142, 784, 832, 864, 930, 1141, 1195
BstMAI GTCTC 4 cut(s) 52, 80, 630, 1456
BstMBI GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
BstMWI GCNNNNNNNGC 2 cut(s) 162, 677
BstNI CCWGG 2 cut(s) 226, 633
BstSCI CCNGG 3 cut(s) 224, 631, 1275
BstSNI TACGTA 2 cut(s) 868, 1151
BstV1I GCAGC 4 cut(s) 312, 577, 599, 1481
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 861
BstYI RGATCY 1 cut(s) 861
BstZ17I GTATAC 2 cut(s) 146, 1183
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 198, 455
Cac8I GCNNGC 2 cut(s) 167, 710
CciI TCATGA 1 cut(s) 1341
Cfr13I GGNCC 1 cut(s) 1551
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 8 cut(s) 134, 233, 765, 869, 1152, 1220, 1556, 1561
CspCI CAANNNNNGTGG 2 cut(s) 1030, 1065
CviAII CATG 6 cut(s) 106, 171, 299, 848, 1001, 1342
CviQI GTAC 8 cut(s) 134, 233, 765, 869, 1152, 1220, 1556, 1561
DdeI CTNAG 4 cut(s) 31, 128, 178, 556
DpnI GATC 7 cut(s) 141, 783, 831, 863, 929, 1140, 1194
DpnII GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 1002, 1008
EarI CTCTTC 2 cut(s) 1002, 1008
Ecl136II GAGCTC 1 cut(s) 177
Eco105I TACGTA 2 cut(s) 868, 1151
Eco130I CCWWGG 2 cut(s) 170, 720
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 1456
Eco32I GATATC 2 cut(s) 103, 1288
Eco47I GGWCC 1 cut(s) 1551
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 1288
Eco88I CYCGRG 1 cut(s) 1427
EcoICRI GAGCTC 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 224, 631
EcoRV GATATC 2 cut(s) 103, 1288
EcoT14I CCWWGG 2 cut(s) 170, 720
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 2 cut(s) 170, 720
FaeI CATG 6 cut(s) 109, 174, 302, 851, 1004, 1345
FaqI GGGAC 1 cut(s) 1247
FatI CATG 6 cut(s) 105, 170, 298, 847, 1000, 1341
FauI CCCGC 1 cut(s) 1573
FbaI TGATCA 1 cut(s) 1138
FblI GTMKAC 2 cut(s) 145, 1182
Fnu4HI GCNGC 6 cut(s) 326, 588, 591, 994, 1415, 1495
FokI GGATG 2 cut(s) 185, 442
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 6 cut(s) 326, 588, 591, 994, 1415, 1495
FspBI CTAG 3 cut(s) 158, 204, 1487
GluI GCNGC 6 cut(s) 326, 588, 591, 994, 1415, 1495
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 654
HapII CCGG 2 cut(s) 744, 1276
HgaI GACGC 1 cut(s) 1067
Hin1I GRCGYC 1 cut(s) 1059
Hin1II CATG 6 cut(s) 109, 174, 302, 851, 1004, 1345
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 2 cut(s) 283, 678
HinfI GANTC 5 cut(s) 248, 438, 469, 884, 899
HpaII CCGG 2 cut(s) 744, 1276
HphI GGTGA 6 cut(s) 61, 974, 1064, 1109, 1118, 1460
Hpy166II GTNNAC 6 cut(s) 134, 146, 398, 883, 1183, 1468
Hpy188I TCNGA 4 cut(s) 559, 571, 841, 1307
Hpy188III TCNNGA 5 cut(s) 435, 481, 1342, 1376, 1427
Hpy8I GTNNAC 6 cut(s) 134, 146, 398, 883, 1183, 1468
HpyAV CCTTC 2 cut(s) 1031, 1509
HpyCH4III ACNGT 5 cut(s) 13, 696, 1049, 1259, 1560
HpyCH4IV ACGT 5 cut(s) 136, 767, 867, 938, 1150
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 677
HpyF3I CTNAG 4 cut(s) 31, 128, 178, 556
HpySE526I ACGT 5 cut(s) 136, 767, 867, 938, 1150
Hsp92I GRCGYC 1 cut(s) 1059
Hsp92II CATG 6 cut(s) 109, 174, 302, 851, 1004, 1345
KpnI GGTACC 1 cut(s) 1564
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
LmnI GCTCC 3 cut(s) 174, 322, 344
Lsp1109I GCAGC 4 cut(s) 312, 577, 599, 1481
LweI GCATC 2 cut(s) 658, 1125
MaeI CTAG 3 cut(s) 158, 204, 1487
MaeII ACGT 5 cut(s) 136, 767, 867, 938, 1150
MaeIII GTNAC 4 cut(s) 68, 851, 962, 1106
MalI GATC 7 cut(s) 141, 783, 831, 863, 929, 1140, 1194
MboI GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
MboII GAAGA 8 cut(s) 354, 511, 523, 1019, 1025, 1145, 1419, 1566
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 9 cut(s) 429, 565, 772, 794, 800, 1207, 1312, 1336, 1444
MlyI GAGTC 3 cut(s) 447, 878, 908
MmeI TCCRAC 2 cut(s) 300, 466
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 8 cut(s) 6, 54, 152, 281, 315, 387, 564, 803
MslI CAYNNNNRTG 2 cut(s) 129, 1473
MspA1I CMGCKG 1 cut(s) 590
MspCI CTTAAG 2 cut(s) 151, 280
MspI CCGG 2 cut(s) 744, 1276
MspR9I CCNGG 3 cut(s) 226, 633, 1277
Mva1269I GAATGC 3 cut(s) 1351, 1405, 1416
MvaI CCWGG 2 cut(s) 226, 633
MwoI GCNNNNNNNGC 2 cut(s) 162, 677
NciI CCSGG 1 cut(s) 1277
NcoI CCATGG 1 cut(s) 170
NdeII GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
NlaIII CATG 6 cut(s) 109, 174, 302, 851, 1004, 1345
NlaIV GGNNCC 2 cut(s) 520, 1562
NmuCI GTSAC 3 cut(s) 68, 962, 1106
NspV TTCGAA 2 cut(s) 365, 1212
OliI CACNNNNGTG 1 cut(s) 129
PagI TCATGA 1 cut(s) 1341
PctI GAATGC 3 cut(s) 1351, 1405, 1416
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 2 cut(s) 248, 469
Pfl23II CGTACG 2 cut(s) 764, 1555
PkrI GCNGC 6 cut(s) 327, 589, 592, 995, 1416, 1496
PleI GAGTC 3 cut(s) 446, 878, 907
PpsI GAGTC 3 cut(s) 446, 878, 907
Ppu21I YACGTR 3 cut(s) 137, 868, 1151
PshBI ATTAAT 2 cut(s) 564, 803
PsiI TTATAA 2 cut(s) 1481, 1582
Psp124BI GAGCTC 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 938
Psp6I CCWGG 2 cut(s) 224, 631
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 224, 631
PspLI CGTACG 2 cut(s) 764, 1555
PspN4I GGNNCC 2 cut(s) 520, 1562
PspPI GGNCC 1 cut(s) 1551
PsuI RGATCY 1 cut(s) 861
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 8 cut(s) 135, 234, 766, 870, 1153, 1221, 1557, 1562
RsaNI GTAC 8 cut(s) 134, 233, 765, 869, 1152, 1220, 1556, 1561
RseI CAYNNNNRTG 2 cut(s) 129, 1473
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 8 cut(s) 6, 54, 152, 281, 315, 387, 564, 803
SatI GCNGC 6 cut(s) 326, 588, 591, 994, 1415, 1495
Sau3AI GATC 7 cut(s) 139, 781, 829, 861, 927, 1138, 1192
Sau96I GGNCC 1 cut(s) 1551
ScaI AGTACT 1 cut(s) 234
SchI GAGTC 3 cut(s) 447, 878, 908
ScrFI CCNGG 3 cut(s) 226, 633, 1277
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 2 cut(s) 658, 1125
SfuI TTCGAA 2 cut(s) 365, 1212
SinI GGWCC 1 cut(s) 1551
SmiMI CAYNNNNRTG 2 cut(s) 129, 1473
SmlI CTYRAG 4 cut(s) 151, 252, 280, 460
SmoI CTYRAG 4 cut(s) 151, 252, 280, 460
SnaBI TACGTA 2 cut(s) 868, 1151
Sse9I AATT 9 cut(s) 429, 565, 772, 794, 800, 1207, 1312, 1336, 1444
SsiI CCGC 4 cut(s) 24, 993, 1414, 1566
SspI AATATT 1 cut(s) 1123
SspMI CTAG 3 cut(s) 158, 204, 1487
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 224, 631, 1275
StyI CCWWGG 2 cut(s) 170, 720
TaaI ACNGT 5 cut(s) 13, 696, 1049, 1259, 1560
TaiI ACGT 5 cut(s) 139, 770, 870, 941, 1153
TaqI TCGA 6 cut(s) 355, 365, 828, 953, 1035, 1212
TaqII GACCGA 1 cut(s) 1438
TasI AATT 9 cut(s) 429, 565, 772, 794, 800, 1207, 1312, 1336, 1444
TatI WGTACW 1 cut(s) 232
TauI GCSGC 2 cut(s) 996, 1417
TfiI GAWTC 2 cut(s) 248, 469
Tru1I TTAA 8 cut(s) 6, 54, 152, 281, 315, 387, 564, 803
Tru9I TTAA 8 cut(s) 6, 54, 152, 281, 315, 387, 564, 803
TseFI GTSAC 3 cut(s) 68, 962, 1106
TseI GCWGC 4 cut(s) 325, 587, 590, 1494
Tsp45I GTSAC 3 cut(s) 68, 962, 1106
TspDTI ATGAA 4 cut(s) 588, 690, 1254, 1330
TspGWI ACGGA 4 cut(s) 56, 462, 990, 1543
Vha464I CTTAAG 2 cut(s) 151, 280
VpaK11BI GGWCC 1 cut(s) 1551
VspI ATTAAT 2 cut(s) 564, 803
XapI RAATTY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 2 cut(s) 145, 1182
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 3 cut(s) 158, 204, 1487
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.