Rroxscaffold_7G00205840

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000144
Physical Location & Seq
Forward (+)
55535845 .. 55536813
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205840.1

Sequence Viewer

Length: 858 bp
ATGGATCACTTAGGAGAGTGGGACTTCCTAATCCACTTTGGATGCGAATTCAGAATCCTGCTTGGATATAATAACCTGGGAAACTACCTCCGCTGGTTCACCAGGTCTGTGTCCTTCAAGAAATTACATGAACACAAAATATCTGCAGGCAAGAGAAAACAAATAGAGAACTGCGACGACGACCAAATTACTTGTCATGGGTCAGTTGGGTGCTGGCAGACACCACCACAAGACATCATGGAGGAGATTCTACGAAATATGGGTTTGATTGCTCGTATACGCTTAGCCAACGTCTGCATGTCTTGGAGTTCACTTGTTATGCGAGCTGAAATCCGCAGTGCTCCTCAACTGCCATGGTTAGTACACCCTCAAACTCCAAACACCAACTACTTAACCTTTTCCAGCCTCTCTGAGGGTGAAGTTATGAACTTGGAGCTCCCAAAGCGATTACGAGGAGAAGGCAAGCTCAAGTTTCGAGCGTCTTCTAAAGGTTGGTTGATCATTTTACAAGAAAAAGGATTCGGCTTTGATATGTTCCTATACAATCCGATTTCTAGAGCCCGACACCAACTTCCTTCCTTAAACACTATTCCATCTTTCCTATCTTTCCAACTAGCAAGAATGCTAGGGAAGGTTATCAACAATCATGCCGACAAACATGCCGAGAATTTTGTGTCTAAAGTTGTGTTGTCTAGTCCAAATATCTCAGAATGCATTGTGGCTGCCGTTTTCCAACCTCAGAAGGAATTGGGATTATGCAGACCTGGAGACAAAAGCTGGACTGTCTTTGAGATACTGAATCATGAGGACGACTTCCTCATGGATTTACTTTTTCGCAGGGCATGCTATACGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

285

Amino Acids

32.79

Weight (kDa)

8.6

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 133 - 267 1.3e-18 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 2 cut(s) 91, 334
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 47, 667
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 3 cut(s) 75, 101, 763
AluBI AGCT 4 cut(s) 326, 436, 466, 777
AluI AGCT 4 cut(s) 326, 436, 466, 777
Alw21I GWGCWC 2 cut(s) 343, 438
Alw26I GTCTC 1 cut(s) 762
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 47, 667
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AsuHPI GGTGA 2 cut(s) 91, 428
BanII GRGCYC 2 cut(s) 438, 562
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 343, 438
BbvI GCAGC 1 cut(s) 709
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 3 cut(s) 77, 103, 765
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 4 cut(s) 555, 614, 626, 693
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 723
BlpI GCTNAGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 724
Bme1390I CCNGG 3 cut(s) 77, 103, 765
BmrFI CCNGG 3 cut(s) 77, 103, 765
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 76, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 412
BseBI CCWGG 3 cut(s) 77, 103, 765
BseDI CCNNGG 2 cut(s) 76, 353
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 402, 720, 752
BseRI GAGGAG 3 cut(s) 257, 333, 468
BseXI GCAGC 1 cut(s) 709
BsiHKAI GWGCWC 2 cut(s) 343, 438
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 2 cut(s) 627, 716
Bsp1286I GDGCHC 3 cut(s) 343, 438, 562
Bsp143I GATC 2 cut(s) 4, 498
Bsp1720I GCTNAGC 1 cut(s) 283
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 2 cut(s) 91, 334
BspCNI CTCAG 3 cut(s) 403, 719, 751
BspHI TCATGA 1 cut(s) 802
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 76, 353
BssMI GATC 2 cut(s) 4, 498
BssNAI GTATAC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 77, 103, 765
Bst4CI ACNGT 1 cut(s) 784
BstAPI GCANNNNNTGC 1 cut(s) 843
BstC8I GCNNGC 5 cut(s) 148, 215, 324, 464, 844
BstDEI CTNAG 6 cut(s) 10, 283, 411, 706, 738, 855
BstDSI CCRYGG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 2 cut(s) 7, 501
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 2 cut(s) 4, 498
BstMWI GCNNNNNNNGC 2 cut(s) 442, 843
BstNI CCWGG 3 cut(s) 77, 103, 765
BstNSI RCATGY 3 cut(s) 301, 662, 846
BstSCI CCNGG 3 cut(s) 75, 101, 763
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 709
BstV2I GAAGAC 1 cut(s) 474
BstZ17I GTATAC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 5 cut(s) 148, 215, 324, 464, 844
CciI TCATGA 1 cut(s) 802
CseI GACGC 1 cut(s) 468
CsiI ACCWGGT 1 cut(s) 101
Csp6I GTAC 1 cut(s) 362
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 6 cut(s) 10, 283, 411, 706, 738, 855
DpnI GATC 2 cut(s) 6, 500
DpnII GATC 2 cut(s) 4, 498
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 2 cut(s) 438, 562
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 75, 101, 763
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 716
EcoT38I GRGCYC 2 cut(s) 438, 562
ErhI CCWWGG 1 cut(s) 353
FaqI GGGAC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 723
FokI GGATG 1 cut(s) 54
FriOI GRGCYC 2 cut(s) 438, 562
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 4 cut(s) 555, 614, 626, 693
GluI GCNGC 1 cut(s) 723
GsuI CTGGAG 1 cut(s) 786
HgaI GACGC 1 cut(s) 468
HinfI GANTC 4 cut(s) 54, 247, 519, 799
HphI GGTGA 2 cut(s) 91, 428
Hpy166II GTNNAC 4 cut(s) 99, 278, 311, 364
Hpy188I TCNGA 5 cut(s) 53, 412, 549, 709, 741
Hpy188III TCNNGA 3 cut(s) 118, 555, 803
Hpy8I GTNNAC 4 cut(s) 99, 278, 311, 364
Hpy99I CGWCG 2 cut(s) 179, 182
HpyAV CCTTC 5 cut(s) 124, 452, 585, 625, 736
HpyCH4III ACNGT 1 cut(s) 784
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 146, 297, 714, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 843
HpyF3I CTNAG 6 cut(s) 10, 283, 411, 706, 738, 855
HpySE526I ACGT 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 2 cut(s) 4, 498
LmnI GCTCC 3 cut(s) 346, 433, 441
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 1 cut(s) 32
MabI ACCWGGT 1 cut(s) 101
MaeI CTAG 4 cut(s) 555, 614, 626, 693
MaeII ACGT 1 cut(s) 291
MalI GATC 2 cut(s) 6, 500
MboI GATC 2 cut(s) 4, 498
MboII GAAGA 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 343, 438, 562
MluCI AATT 5 cut(s) 47, 122, 186, 667, 746
MmeI TCCRAC 2 cut(s) 634, 757
Mph1103I ATGCAT 1 cut(s) 716
MseI TTAA 2 cut(s) 392, 581
MspA1I CMGCKG 1 cut(s) 93
MspR9I CCNGG 3 cut(s) 77, 103, 765
Mva1269I GAATGC 2 cut(s) 627, 716
MvaI CCWGG 3 cut(s) 77, 103, 765
MwoI GCNNNNNNNGC 2 cut(s) 442, 843
NcoI CCATGG 1 cut(s) 353
NdeII GATC 2 cut(s) 4, 498
NmeAIII GCCGAG 1 cut(s) 688
NsiI ATGCAT 1 cut(s) 716
NspI RCATGY 3 cut(s) 301, 662, 846
PaeI GCATGC 1 cut(s) 846
PagI TCATGA 1 cut(s) 802
PctI GAATGC 2 cut(s) 627, 716
PfeI GAWTC 4 cut(s) 54, 247, 519, 799
PkrI GCNGC 1 cut(s) 724
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 3 cut(s) 75, 101, 763
PspGI CCWGG 3 cut(s) 75, 101, 763
PstI CTGCAG 1 cut(s) 148
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 392, 581
SatI GCNGC 1 cut(s) 723
Sau3AI GATC 2 cut(s) 4, 498
ScrFI CCNGG 3 cut(s) 77, 103, 765
SduI GDGCHC 3 cut(s) 343, 438, 562
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
SphI GCATGC 1 cut(s) 846
Sse9I AATT 5 cut(s) 47, 122, 186, 667, 746
SsiI CCGC 2 cut(s) 91, 334
SspMI CTAG 4 cut(s) 555, 614, 626, 693
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 75, 101, 763
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 784
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 475
TasI AATT 5 cut(s) 47, 122, 186, 667, 746
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 4 cut(s) 54, 247, 519, 799
Tru1I TTAA 2 cut(s) 392, 581
Tru9I TTAA 2 cut(s) 392, 581
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 722
TspDTI ATGAA 2 cut(s) 144, 440
TspRI CASTG 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 2 cut(s) 47, 667
XbaI TCTAGA 1 cut(s) 554
XceI RCATGY 3 cut(s) 301, 662, 846
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 4 cut(s) 555, 614, 626, 693
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.