Rorug04G0001400

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000144
Physical Location & Seq
Reverse (-)
324865 .. 327458
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0001400.1

Sequence Viewer

Length: 1959 bp
ATGATGGAAGTGGAACAAGGAGGAGGAAGAGAGCGAATATTCGTTGGGGGTTTGGGAGAGAGCGTGACGGAAGACGATCTGCAAAGGCTGTTCACCGGAGTTGGAGGAAGCGTCGACGGAATCGATATAATCAGAACCAAAGGCCGTAGCTTTGCTTACGTCGACTTTCTGCCTTGCTCAGACAAGTCCCTCTCCAAGCTCTTCGCCACGTATAATGGGTGCGTTTGGAAGGGCGGGAAGCTGAAGCTCCACAAGGCTAAAGAACATTATCTTGTTCGTTTGAGACGAGAATGGGGTGAACAAGAAAATGCTCAACTTGCTGCTCAAACCCAAGAAGCTAAAACTGCTTCACAACACAGCACCAAGCAGCTTCGCTTATTCTTTCCTGCTCTAAGAACCGTGAAAGCTTTGCCCTTTAGTGGAACTGGCAAACACAAATACAGTTTCCAGCGTGTTCAAGTTCCTTCTCTCCCCCTTCATTTCTGTGACTGTGAAGAGCATGCTGTTTCTGACCCTTCTCCTGATCAACAAAACCAATTACCAGCTGACCATGTTATCAATGACAAAGAGCTTAGTATAATGAATAAAGTAATGGACAAGCTCTTACAAAAGGAATTGGAACATGTTTCTGATGATGCTGATCACAATACTACCGCCTCCCCTCTGCCTCTGCCTAGTCAACAACATCGTGAGCTTCATCTTCCTACTGAAGCGGAAGCTGAGGAAGATGACCTCATAATTAATATTGTGTCAAGTAAACATGAAGAAAACATAGTATCGGCCTTGGAGGAATTGAGATCCAGCGGAACACAGGTGTGCAGTAAGATTAATGGACCTCCTAACAAAAAGAGGAAATCCCTTCTCAACAAGAATTGCAATGAAATAGAATTGGAGCCTGATATCCCTGGCTCAAATACTGATTCTAAATCTCAACCAGATAAACCAGAGCTGGGTGTCCAACAATCCACTGCCCCGGTTTCATGGTCTCAAAAATGTTCATGGAGACAACTTGTCGGTCATAGGGACAACAGTGGGTTCAGTGTCTCACATATACTGACAGGCAGATCTTCTTCTAGTGACCAAATGGAGCCCAAATCTGGCAGTTCCGATGTGCACCAGTCTGAGGACCTGGCAAGTGACGGAAACTCAGAAGAACTGCTGTCTGAGATGGAACCACTTAAGGGAAGATCAGAACATAAACCTACCAAGTCGGTATCTGACTCATATGAGTCGGGTATAGTTCCTTCATGGCATCAGGAATTATCTCTGACACAACTGACTGATGAGAATACTGGGAGTGTAACTGAACAGGCCCAGCCAAACTCTGGTTCTGGTGCTTTTGAAGTGCCCCATTCTGACAGCAAAAACCAGGACTTGGCAAGAGATGGAAACTTGGAAGGCCAGCTCTGTGAGATGGAACTGGTGGAGGAGAATGCGGATCCTCAACCTCAAAATGCACTATCAAACTCAACTAAGTCAGGTAGAGGAGCTTCATGGCGCCAGAAATCGTCCTGGACACAATTGATTAATGACAATACTGGAAGCTCTTTCAGCATAACACAAGTTCTACCAGCTGGTATCTCTTTCAAGCAACAAGGGTTCCAAAAGCCCAGAGGTGTAGATGTCATGAGCTCTTTTGGCAGCAAGCTCAAGGAAACAGTAAAGCAAGATAAGAATAAACTTACTAGAGGTGAATCCTCTTCTTTGGGGATAATTGGAAAGGAGGGGGATGGTTTACCACGGAGTACTCCTAAAGAGAATCAACAGATTATTGCTGGCAATGACAATGCTCCAGATCTGGGAAAAATATGTGATTTGACACCAAAGCAAGCATCTACAGGCACTGTTGACAAAGGTAAAACCTGCTTATTTGTGAGAAGTGCTGCTTCATTAAATGAATGGGCGAAAGCTAAGGCTGCCCTAAGTGGGTCACGAAAAAGAAAGAACAGCAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

652

Amino Acids

71.39

Weight (kDa)

5.97

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 13 - 56 6.4e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1871
AccB1I GGYRCC 1 cut(s) 1497
AccB7I CCANNNNNTGG 2 cut(s) 1325, 1375
AccI GTMKAC 2 cut(s) 114, 162
AciI CCGC 5 cut(s) 234, 654, 713, 804, 1436
AclWI GGATC 3 cut(s) 792, 1433, 1446
AcuI CTGAAG 2 cut(s) 263, 729
AcyI GRCGYC 1 cut(s) 1498
AfaI GTAC 1 cut(s) 1747
AfiI CCNNNNNNNGG 9 cut(s) 419, 950, 1097, 1123, 1181, 1325, 1375, 1799, 1926
AflII CTTAAG 1 cut(s) 1178
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 3 cut(s) 458, 1343, 1588
AhdI GACNNNNNGTC 1 cut(s) 1010
AjnI CCWGG 4 cut(s) 904, 1128, 1368, 1511
AjuI GAANNNNNNNTTGG 2 cut(s) 1312, 1344
AleI CACNNNNGTG 1 cut(s) 814
Alw21I GWGCWC 2 cut(s) 1116, 1634
Alw26I GTCTC 4 cut(s) 277, 990, 997, 1048
Alw44I GTGCAC 1 cut(s) 1112
AlwI GGATC 3 cut(s) 792, 1433, 1446
AlwNI CAGNNNCTG 1 cut(s) 1844
AoxI GGCC 4 cut(s) 142, 780, 1311, 1399
ApaLI GTGCAC 1 cut(s) 1112
ApeKI GCWGC 5 cut(s) 320, 367, 1641, 1883, 1916
AseI ATTAAT 3 cut(s) 741, 828, 1527
AspLEI GCGC 1 cut(s) 1500
AspS9I GGNCC 3 cut(s) 833, 1126, 1312
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 3 cut(s) 85, 308, 1703
AvaII GGWCC 2 cut(s) 833, 1126
BaeGI GKGCMC 2 cut(s) 1116, 1350
BamHI GGATCC 1 cut(s) 1438
BanI GGYRCC 1 cut(s) 1497
BanII GRGCYC 2 cut(s) 1092, 1634
BarI GAAGNNNNNNTAC 4 cut(s) 1228, 1260, 1474, 1506
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 1116, 1634
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 5 cut(s) 307, 379, 1653, 1870, 1903
BccI CCATC 4 cut(s) 1162, 1379, 1408, 1724
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 4 cut(s) 906, 1130, 1370, 1513
BclI TGATCA 2 cut(s) 523, 640
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 4 cut(s) 277, 990, 997, 1048
BfaI CTAG 3 cut(s) 675, 1074, 1686
BfmI CTRYAG 1 cut(s) 1836
BfoI RGCGCY 1 cut(s) 1501
BfrI CTTAAG 1 cut(s) 1178
BfuAI ACCTGC 1 cut(s) 1871
BglII AGATCT 2 cut(s) 1064, 1795
BisI GCNGC 5 cut(s) 321, 368, 1642, 1884, 1917
BlsI GCNGC 5 cut(s) 322, 369, 1643, 1885, 1918
BmcAI AGTACT 1 cut(s) 1747
Bme1390I CCNGG 5 cut(s) 906, 974, 1130, 1370, 1513
Bme18I GGWCC 2 cut(s) 833, 1126
BmeRI GACNNNNNGTC 1 cut(s) 1010
BmgT120I GGNCC 3 cut(s) 833, 1126, 1312
BmiI GGNNCC 6 cut(s) 894, 1089, 1173, 1440, 1499, 1601
BmrFI CCNGG 5 cut(s) 906, 974, 1130, 1370, 1513
BmrI ACTGGG 1 cut(s) 1302
BmsI GCATC 3 cut(s) 625, 1261, 1841
BmuI ACTGGG 1 cut(s) 1302
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 1776
Bpu10I CCTNAGC 2 cut(s) 720, 1911
BpuEI CTTGAG 1 cut(s) 1634
BpuMI CCSGG 1 cut(s) 974
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 1498
BsaI GGTCTC 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 783, 904, 972, 1739
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 96, 126
Bsc4I CCNNNNNNNGG 9 cut(s) 419, 950, 1097, 1123, 1181, 1325, 1375, 1799, 1926
Bse1I ACTGG 5 cut(s) 430, 1117, 1297, 1425, 1543
Bse3DI GCAATG 2 cut(s) 883, 1786
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 4 cut(s) 906, 1130, 1370, 1513
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 783, 904, 972, 1739
BseGI GGATG 1 cut(s) 1735
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 9 cut(s) 419, 950, 1097, 1123, 1181, 1325, 1375, 1799, 1926
BseMI GCAATG 2 cut(s) 883, 1786
BseMII CTCAG 5 cut(s) 192, 711, 1113, 1155, 1161
BseNI ACTGG 5 cut(s) 430, 1117, 1297, 1425, 1543
BseRI GAGGAG 3 cut(s) 36, 1442, 1500
BseSI GKGCMC 2 cut(s) 1116, 1350
BseXI GCAGC 5 cut(s) 307, 379, 1653, 1870, 1903
BseYI CCCAGC 2 cut(s) 949, 1314
BsgI GTGCAG 1 cut(s) 838
BshFI GGCC 4 cut(s) 144, 782, 1313, 1401
BshNI GGYRCC 1 cut(s) 1497
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 1116, 1634
BsiSI CCGG 2 cut(s) 96, 974
BslFI GGGAC 2 cut(s) 172, 1037
BslI CCNNNNNNNGG 9 cut(s) 419, 950, 1097, 1123, 1181, 1325, 1375, 1799, 1926
BsmAI GTCTC 4 cut(s) 277, 990, 997, 1048
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 2 cut(s) 172, 1037
BsmI GAATGC 1 cut(s) 1438
BsnI GGCC 4 cut(s) 144, 782, 1313, 1401
Bso31I GGTCTC 1 cut(s) 990
Bsp1286I GDGCHC 4 cut(s) 1092, 1116, 1350, 1634
Bsp143I GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
BspACI CCGC 5 cut(s) 234, 654, 713, 804, 1436
BspANI GGCC 4 cut(s) 144, 782, 1313, 1401
BspCNI CTCAG 5 cut(s) 191, 712, 1114, 1156, 1160
BspDI ATCGAT 1 cut(s) 123
BspHI TCATGA 1 cut(s) 1626
BspLI GGNNCC 6 cut(s) 894, 1089, 1173, 1440, 1499, 1601
BspMI ACCTGC 1 cut(s) 1871
BspPI GGATC 3 cut(s) 792, 1433, 1446
BspQI GCTCTTC 2 cut(s) 206, 489
BspT107I GGYRCC 1 cut(s) 1497
BspTI CTTAAG 1 cut(s) 1178
BspTNI GGTCTC 1 cut(s) 990
BsrDI GCAATG 2 cut(s) 883, 1786
BsrI ACTGG 5 cut(s) 430, 1117, 1297, 1425, 1543
BssECI CCNNGG 4 cut(s) 783, 904, 972, 1739
BssMI GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
BssNI GRCGYC 1 cut(s) 1498
BssT1I CCWWGG 1 cut(s) 783
Bst2UI CCWGG 4 cut(s) 906, 1130, 1370, 1513
Bst4CI ACNGT 6 cut(s) 400, 443, 491, 1031, 1660, 1846
Bst6I CTCTTC 4 cut(s) 22, 206, 489, 1705
BstACI GRCGYC 1 cut(s) 1498
BstAFI CTTAAG 1 cut(s) 1178
BstBAI YACGTR 1 cut(s) 210
BstC8I GCNNGC 5 cut(s) 501, 1403, 1646, 1777, 1830
BstDSI CCRYGG 1 cut(s) 1739
BstF5I GGATG 1 cut(s) 1735
BstH2I RGCGCY 1 cut(s) 1501
BstHHI GCGC 1 cut(s) 1500
BstKTI GATC 8 cut(s) 79, 526, 643, 800, 1067, 1190, 1441, 1798
BstMAI GTCTC 4 cut(s) 277, 990, 997, 1048
BstMBI GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
BstMWI GCNNNNNNNGC 5 cut(s) 317, 344, 1551, 1638, 1916
BstNI CCWGG 4 cut(s) 906, 1130, 1370, 1513
BstNSI RCATGY 2 cut(s) 503, 626
BstSCI CCNGG 5 cut(s) 904, 972, 1128, 1368, 1511
BstSFI CTRYAG 1 cut(s) 1836
BstSLI GKGCMC 2 cut(s) 1116, 1350
BstV1I GCAGC 5 cut(s) 307, 379, 1653, 1870, 1903
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 4 cut(s) 797, 1064, 1438, 1795
BstYI RGATCY 4 cut(s) 797, 1064, 1438, 1795
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 4 cut(s) 144, 782, 1313, 1401
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 1739
BtsCI GGATG 1 cut(s) 1735
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 4 cut(s) 966, 1036, 1045, 1842
BveI ACCTGC 1 cut(s) 1871
Cac8I GCNNGC 5 cut(s) 501, 1403, 1646, 1777, 1830
CaiI CAGNNNCTG 1 cut(s) 1844
CciI TCATGA 1 cut(s) 1626
CfoI GCGC 1 cut(s) 1500
Cfr13I GGNCC 3 cut(s) 833, 1126, 1312
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 1746
CviAII CATG 9 cut(s) 500, 551, 623, 761, 981, 999, 1248, 1494, 1627
CviQI GTAC 1 cut(s) 1746
DinI GGCGCC 1 cut(s) 1499
DpnI GATC 8 cut(s) 78, 525, 642, 799, 1066, 1189, 1440, 1797
DpnII GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
DriI GACNNNNNGTC 1 cut(s) 1010
Eam1104I CTCTTC 4 cut(s) 22, 206, 489, 1705
Eam1105I GACNNNNNGTC 1 cut(s) 1010
EarI CTCTTC 4 cut(s) 22, 206, 489, 1705
Ecl136II GAGCTC 1 cut(s) 1632
Eco130I CCWWGG 1 cut(s) 783
Eco24I GRGCYC 2 cut(s) 1092, 1634
Eco31I GGTCTC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 833, 1126
Eco53kI GAGCTC 1 cut(s) 1632
Eco57I CTGAAG 2 cut(s) 263, 729
EcoICRI GAGCTC 1 cut(s) 1632
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRII CCWGG 4 cut(s) 904, 1128, 1368, 1511
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 783
EcoT38I GRGCYC 2 cut(s) 1092, 1634
EgeI GGCGCC 1 cut(s) 1499
EheI GGCGCC 1 cut(s) 1499
ErhI CCWWGG 1 cut(s) 783
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 9 cut(s) 503, 554, 626, 764, 984, 1002, 1251, 1497, 1630
FalI AAGNNNNNCTT 2 cut(s) 1870, 1902
FaqI GGGAC 2 cut(s) 172, 1037
FatI CATG 9 cut(s) 499, 550, 622, 760, 980, 998, 1247, 1493, 1626
FauI CCCGC 1 cut(s) 227
FauNDI CATATG 1 cut(s) 1225
FbaI TGATCA 2 cut(s) 523, 640
FblI GTMKAC 2 cut(s) 114, 162
Fnu4HI GCNGC 5 cut(s) 321, 368, 1642, 1884, 1917
FokI GGATG 1 cut(s) 1742
FriOI GRGCYC 2 cut(s) 1092, 1634
Fsp4HI GCNGC 5 cut(s) 321, 368, 1642, 1884, 1917
FspBI CTAG 3 cut(s) 675, 1074, 1686
GlaI GCGC 1 cut(s) 1499
GluI GCNGC 5 cut(s) 321, 368, 1642, 1884, 1917
GsaI CCCAGC 2 cut(s) 953, 1318
GsuI CTGGAG 1 cut(s) 1776
HaeII RGCGCY 1 cut(s) 1501
HaeIII GGCC 4 cut(s) 144, 782, 1313, 1401
HapII CCGG 2 cut(s) 96, 974
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 1500
Hin1I GRCGYC 1 cut(s) 1498
Hin1II CATG 9 cut(s) 503, 554, 626, 764, 984, 1002, 1251, 1497, 1630
Hin6I GCGC 1 cut(s) 1498
HinP1I GCGC 1 cut(s) 1498
HincII GTYRAC 4 cut(s) 115, 163, 680, 1849
HindII GTYRAC 4 cut(s) 115, 163, 680, 1849
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 6 cut(s) 120, 920, 1220, 1229, 1694, 1759
HpaII CCGG 2 cut(s) 96, 974
HphI GGTGA 3 cut(s) 85, 308, 1703
Hpy166II GTNNAC 9 cut(s) 93, 115, 163, 299, 680, 758, 1114, 1736, 1849
Hpy188III TCNNGA 6 cut(s) 521, 689, 1256, 1627, 1793, 1932
Hpy8I GTNNAC 9 cut(s) 93, 115, 163, 299, 680, 758, 1114, 1736, 1849
Hpy99I CGWCG 3 cut(s) 116, 119, 164
HpyAV CCTTC 7 cut(s) 223, 474, 485, 525, 869, 1254, 1391
HpyCH4III ACNGT 6 cut(s) 400, 443, 491, 1031, 1660, 1846
HpyCH4IV ACGT 2 cut(s) 159, 209
HpyCH4V TGCA 5 cut(s) 82, 819, 876, 1114, 1457
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 344, 1551, 1638, 1916
HpySE526I ACGT 2 cut(s) 159, 209
Hsp92I GRCGYC 1 cut(s) 1498
Hsp92II CATG 9 cut(s) 503, 554, 626, 764, 984, 1002, 1251, 1497, 1630
HspAI GCGC 1 cut(s) 1498
KasI GGCGCC 1 cut(s) 1497
Ksp22I TGATCA 2 cut(s) 523, 640
Kzo9I GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
LguI GCTCTTC 2 cut(s) 206, 489
LmnI GCTCC 5 cut(s) 252, 892, 1087, 1487, 1795
Lsp1109I GCAGC 5 cut(s) 307, 379, 1653, 1870, 1903
LweI GCATC 3 cut(s) 625, 1261, 1841
MaeI CTAG 3 cut(s) 675, 1074, 1686
MaeII ACGT 2 cut(s) 159, 209
MaeIII GTNAC 6 cut(s) 64, 485, 1076, 1136, 1300, 1929
MalI GATC 8 cut(s) 78, 525, 642, 799, 1066, 1189, 1440, 1797
MboI GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
MfeI CAATTG 1 cut(s) 1520
MflI RGATCY 4 cut(s) 797, 1064, 1438, 1795
MhlI GDGCHC 4 cut(s) 1092, 1116, 1350, 1634
MluCI AATT 9 cut(s) 536, 614, 738, 791, 871, 887, 1259, 1520, 1713
Mly113I GGCGCC 1 cut(s) 1498
MlyI GAGTC 2 cut(s) 1214, 1238
MmeI TCCRAC 2 cut(s) 82, 982
MseI TTAA 5 cut(s) 741, 828, 1179, 1527, 1892
MslI CAYNNNNRTG 2 cut(s) 483, 814
MspA1I CMGCKG 3 cut(s) 545, 804, 1574
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 2 cut(s) 96, 974
MspR9I CCNGG 5 cut(s) 906, 974, 1130, 1370, 1513
MunI CAATTG 1 cut(s) 1520
Mva1269I GAATGC 1 cut(s) 1438
MvaI CCWGG 4 cut(s) 906, 1130, 1370, 1513
MwoI GCNNNNNNNGC 5 cut(s) 317, 344, 1551, 1638, 1916
NarI GGCGCC 1 cut(s) 1498
NciI CCSGG 1 cut(s) 974
NdeI CATATG 1 cut(s) 1225
NdeII GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
NlaIII CATG 9 cut(s) 503, 554, 626, 764, 984, 1002, 1251, 1497, 1630
NlaIV GGNNCC 6 cut(s) 894, 1089, 1173, 1440, 1499, 1601
NmuCI GTSAC 5 cut(s) 64, 485, 1076, 1136, 1929
NspI RCATGY 2 cut(s) 503, 626
OliI CACNNNNGTG 1 cut(s) 814
PaeI GCATGC 1 cut(s) 503
PagI TCATGA 1 cut(s) 1626
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 2 cut(s) 206, 489
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 283
PctI GAATGC 1 cut(s) 1438
PfeI GAWTC 4 cut(s) 120, 920, 1694, 1759
PflMI CCANNNNNTGG 2 cut(s) 1325, 1375
PfoI TCCNGGA 1 cut(s) 1511
PkrI GCNGC 5 cut(s) 322, 369, 1643, 1885, 1918
PleI GAGTC 2 cut(s) 1214, 1237
PluTI GGCGCC 1 cut(s) 1501
PpsI GAGTC 2 cut(s) 1214, 1237
Ppu21I YACGTR 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 1126
PscI ACATGT 1 cut(s) 622
PshBI ATTAAT 3 cut(s) 741, 828, 1527
Psp124BI GAGCTC 1 cut(s) 1634
Psp5II RGGWCCY 1 cut(s) 1126
Psp6I CCWGG 4 cut(s) 904, 1128, 1368, 1511
PspFI CCCAGC 2 cut(s) 949, 1314
PspGI CCWGG 4 cut(s) 904, 1128, 1368, 1511
PspN4I GGNNCC 6 cut(s) 894, 1089, 1173, 1440, 1499, 1601
PspPI GGNCC 3 cut(s) 833, 1126, 1312
PspPPI RGGWCCY 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 1844
PsuI RGATCY 4 cut(s) 797, 1064, 1438, 1795
PvuII CAGCTG 2 cut(s) 545, 1574
RsaI GTAC 1 cut(s) 1747
RsaNI GTAC 1 cut(s) 1746
RseI CAYNNNNRTG 2 cut(s) 483, 814
SacI GAGCTC 1 cut(s) 1634
SalI GTCGAC 2 cut(s) 113, 161
SapI GCTCTTC 2 cut(s) 206, 489
SaqAI TTAA 5 cut(s) 741, 828, 1179, 1527, 1892
SatI GCNGC 5 cut(s) 321, 368, 1642, 1884, 1917
Sau3AI GATC 8 cut(s) 76, 523, 640, 797, 1064, 1187, 1438, 1795
Sau96I GGNCC 3 cut(s) 833, 1126, 1312
ScaI AGTACT 1 cut(s) 1747
SchI GAGTC 2 cut(s) 1214, 1238
ScrFI CCNGG 5 cut(s) 906, 974, 1130, 1370, 1513
SduI GDGCHC 4 cut(s) 1092, 1116, 1350, 1634
SfaNI GCATC 3 cut(s) 625, 1261, 1841
SfcI CTRYAG 1 cut(s) 1836
SfoI GGCGCC 1 cut(s) 1499
SgrDI CGTCGACG 1 cut(s) 113
SinI GGWCC 2 cut(s) 833, 1126
SmiMI CAYNNNNRTG 2 cut(s) 483, 814
SmlI CTYRAG 2 cut(s) 1178, 1649
SmoI CTYRAG 2 cut(s) 1178, 1649
SphI GCATGC 1 cut(s) 503
Sse9I AATT 9 cut(s) 536, 614, 738, 791, 871, 887, 1259, 1520, 1713
SsiI CCGC 5 cut(s) 234, 654, 713, 804, 1436
SspDI GGCGCC 1 cut(s) 1497
SspI AATATT 2 cut(s) 39, 745
SspMI CTAG 3 cut(s) 675, 1074, 1686
SstI GAGCTC 1 cut(s) 1634
StyD4I CCNGG 5 cut(s) 904, 972, 1128, 1368, 1511
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 6 cut(s) 400, 443, 491, 1031, 1660, 1846
TaiI ACGT 2 cut(s) 162, 212
TaqI TCGA 3 cut(s) 114, 123, 162
TaqII GACCGA 1 cut(s) 1004
TasI AATT 9 cut(s) 536, 614, 738, 791, 871, 887, 1259, 1520, 1713
TatI WGTACW 1 cut(s) 1745
TfiI GAWTC 4 cut(s) 120, 920, 1694, 1759
Tru1I TTAA 5 cut(s) 741, 828, 1179, 1527, 1892
Tru9I TTAA 5 cut(s) 741, 828, 1179, 1527, 1892
TscAI CASTG 4 cut(s) 973, 1036, 1045, 1849
TseFI GTSAC 5 cut(s) 64, 485, 1076, 1136, 1929
TseI GCWGC 5 cut(s) 320, 367, 1641, 1883, 1916
Tsp45I GTSAC 5 cut(s) 64, 485, 1076, 1136, 1929
TspGWI ACGGA 4 cut(s) 83, 132, 1155, 1756
TspRI CASTG 4 cut(s) 973, 1036, 1045, 1849
Van91I CCANNNNNTGG 2 cut(s) 1325, 1375
Vha464I CTTAAG 1 cut(s) 1178
VneI GTGCAC 1 cut(s) 1112
VpaK11BI GGWCC 2 cut(s) 833, 1126
VspI ATTAAT 3 cut(s) 741, 828, 1527
XceI RCATGY 2 cut(s) 503, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 1322
XmiI GTMKAC 2 cut(s) 114, 162
XspI CTAG 3 cut(s) 675, 1074, 1686
ZrmI AGTACT 1 cut(s) 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.