RLG00000014902

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000144
Physical Location & Seq
Reverse (-)
59317181 .. 59318608
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014902

Sequence Viewer

Length: 1134 bp
ATGGTTACTAATGAGTATAGTTGTTGGCAGACACCACCTCTAGATATCATGGAGAACATTCTACAACGTGTCAATTTAGGAGATCGAATACGGTTAAGAAACTCTTGCAAGTATTGGAAGTCAATTGCTATGCGAAGAGACATCCCCGGGGCTCCGCATGAACTCCCATGGTTACTGCTGCCTCAAGCCCCCAAATGCAGTAACAAGTGCTTGAGCTTTGCCAGCCTCACTGAGAGGAAAGAAGTCAAGTTAAAGCTTCCTACGGAAGTTCGAGGAAGCTGGATTTTTGGGTCTTCTAAAGGTTGGTTGATCATGGTCAAGGAAAAAGGATTACAGTCTACGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACACAAACTTCCGCCATTGAGGACAATTCCATCTTTCAAAAAGATTGTAAACATGAGGCAGTGGAAACGTTTTGGTGCCAACTCTTTCCTTTTGAATGTTGCATTACTTACCTCTCATGATCTTAATTCTTCAGGCCATTTTACGGTAGCCATAGTTTTTGAGGATTTTAAGGACCACAAGACATTAGGTTTATGCAAACTTGGAGACCTAACATGGAGTGTCTTCCAGGTATTTAATAACAACGACCGCCTTGAGCTTGTGGATATACTGTTTTCTCGAGGCATTCTGTATGCTTTAGTCGATAGTCAAAAGGATGGCTTGGTAGCAGCTACTCGCACTTTAAACTTCGCAGATCATGAACTGAAGTTAAAAGTGATTCACAACAAGCATGAACACAGGAATGTGATAATTGATGAATTTACTAATAACTATGCGAGAGCGAGAGTTTCCAATGCAAACTATGGCTCAATATTGCTAGAATCCACCAGCAATGAAGTCTTGAACTTGGGAGACCAAGTGTTGTTTTTCGGATATGGTAGTTCTGTCTCTCTTCCGGCTAGTAATTTATCAGAAGTAGAAAGGAATTGTATTTATTTCGCAACAAATAATGTGTTTGATTTTGAATTGGCTCCTAAAATATATAAGTCCCGTGAGATCGGCATATTCTACTTAGAGGGTGAAAGAATTAGGCGGCCTTTTTCGAGTGTCAAAATATCAGTGTTGTATCAACCCACATGGTTCACTCCAAGTTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

378

Amino Acids

43.06

Weight (kDa)

9.28

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 45 5.1e-06 F-box domain
Beta-prop_KIB1-4 PF03478 73 - 347 1.2e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 2 cut(s) 338, 349
AciI CCGC 4 cut(s) 155, 386, 622, 1066
AclI AACGTT 1 cut(s) 442
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 2 cut(s) 489, 758
AfiI CCNNNNNNNGG 2 cut(s) 365, 517
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 4 cut(s) 412, 469, 877, 998
AjnI CCWGG 1 cut(s) 600
AluBI AGCT 5 cut(s) 216, 256, 279, 631, 704
AluI AGCT 5 cut(s) 216, 256, 279, 631, 704
Alw26I GTCTC 4 cut(s) 132, 573, 879, 925
Ama87I CYCGRG 2 cut(s) 146, 651
AoxI GGCC 2 cut(s) 508, 1067
ApeKI GCWGC 2 cut(s) 178, 701
ApoI RAATTY 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 147, 148
AsuHPI GGTGA 1 cut(s) 1064
AvaI CYCGRG 2 cut(s) 146, 651
AvaII GGWCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 154, 373
BbsI GAAGAC 2 cut(s) 285, 589
BbvI GCAGC 2 cut(s) 165, 713
BccI CCATC 2 cut(s) 412, 683
BciT130I CCWGG 1 cut(s) 602
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 147, 148
BcoDI GTCTC 4 cut(s) 132, 573, 879, 925
BfaI CTAG 3 cut(s) 41, 851, 933
BisI GCNGC 3 cut(s) 179, 702, 1067
BlsI GCNGC 3 cut(s) 180, 703, 1068
Bme1390I CCNGG 3 cut(s) 147, 148, 602
Bme18I GGWCC 1 cut(s) 547
BmeT110I CYCGRG 2 cut(s) 146, 651
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 4 cut(s) 153, 370, 451, 1005
BmrFI CCNGG 3 cut(s) 147, 148, 602
BpiI GAAGAC 2 cut(s) 285, 589
BpuEI CTTGAG 3 cut(s) 168, 232, 647
BpuMI CCSGG 2 cut(s) 147, 148
BsaI GGTCTC 2 cut(s) 573, 879
BsaJI CCNNGG 4 cut(s) 145, 146, 147, 167
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 517
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 4 cut(s) 145, 146, 147, 167
BseGI GGATG 2 cut(s) 141, 694
BseLI CCNNNNNNNGG 2 cut(s) 365, 517
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 165, 713
Bsh1285I CGRYCG 1 cut(s) 622
BshFI GGCC 2 cut(s) 510, 1069
BshNI GGYRCC 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 146, 651
BsiSI CCGG 2 cut(s) 147, 929
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 2 cut(s) 365, 517
BsmAI GTCTC 4 cut(s) 132, 573, 879, 925
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 2 cut(s) 510, 1069
Bso31I GGTCTC 2 cut(s) 573, 879
BsoBI CYCGRG 2 cut(s) 146, 651
Bsp1286I GDGCHC 2 cut(s) 154, 373
Bsp143I GATC 5 cut(s) 82, 309, 493, 727, 1029
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 4 cut(s) 155, 386, 622, 1066
BspANI GGCC 2 cut(s) 510, 1069
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 2 cut(s) 490, 730
BspLI GGNNCC 4 cut(s) 153, 370, 451, 1005
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 2 cut(s) 573, 879
BsrDI GCAATG 1 cut(s) 871
BssECI CCNNGG 4 cut(s) 145, 146, 147, 167
BssMI GATC 5 cut(s) 82, 309, 493, 727, 1029
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 4 cut(s) 93, 336, 520, 645
Bst6I CTCTTC 2 cut(s) 130, 930
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 231, 1045
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 141, 694
BstKTI GATC 5 cut(s) 85, 312, 496, 730, 1032
BstMAI GTCTC 4 cut(s) 132, 573, 879, 925
BstMBI GATC 5 cut(s) 82, 309, 493, 727, 1029
BstMCI CGRYCG 1 cut(s) 622
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 145, 146, 600
BstV1I GCAGC 2 cut(s) 165, 713
BstV2I GAAGAC 2 cut(s) 285, 589
BsuRI GGCC 2 cut(s) 510, 1069
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 2 cut(s) 141, 694
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 3 cut(s) 228, 440, 1098
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 2 cut(s) 490, 730
Cfr13I GGNCC 1 cut(s) 547
Cfr9I CCCGGG 1 cut(s) 146
DdeI CTNAG 2 cut(s) 231, 1045
DpnI GATC 5 cut(s) 84, 311, 495, 729, 1031
DpnII GATC 5 cut(s) 82, 309, 493, 727, 1029
DraI TTTAAA 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 130, 930
EarI CTCTTC 2 cut(s) 130, 930
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 154, 373
Eco31I GGTCTC 2 cut(s) 573, 879
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 489, 758
Eco88I CYCGRG 2 cut(s) 146, 651
EcoRII CCWGG 1 cut(s) 600
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 154, 373
ErhI CCWWGG 1 cut(s) 167
FalI AAGNNNNNCTT 4 cut(s) 88, 120, 677, 709
FaqI GGGAC 1 cut(s) 1006
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 2 cut(s) 338, 349
Fnu4HI GCNGC 3 cut(s) 179, 702, 1067
FokI GGATG 2 cut(s) 128, 701
FriOI GRGCYC 2 cut(s) 154, 373
Fsp4HI GCNGC 3 cut(s) 179, 702, 1067
FspBI CTAG 3 cut(s) 41, 851, 933
GluI GCNGC 3 cut(s) 179, 702, 1067
HaeIII GGCC 2 cut(s) 510, 1069
HapII CCGG 2 cut(s) 147, 929
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 751, 854
HpaII CCGG 2 cut(s) 147, 929
HphI GGTGA 1 cut(s) 1064
Hpy166II GTNNAC 4 cut(s) 339, 350, 424, 1116
Hpy188I TCNGA 2 cut(s) 905, 946
Hpy188III TCNNGA 6 cut(s) 41, 366, 491, 651, 731, 874
Hpy8I GTNNAC 4 cut(s) 339, 350, 424, 1116
HpyCH4III ACNGT 4 cut(s) 93, 336, 520, 645
HpyCH4IV ACGT 2 cut(s) 67, 442
HpyCH4V TGCA 6 cut(s) 108, 198, 476, 570, 830, 1129
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 231, 1045
HpySE526I ACGT 2 cut(s) 67, 442
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 5 cut(s) 82, 309, 493, 727, 1029
LmnI GCTCC 3 cut(s) 157, 368, 1009
Lsp1109I GCAGC 2 cut(s) 165, 713
MaeI CTAG 3 cut(s) 41, 851, 933
MaeII ACGT 2 cut(s) 67, 442
MaeIII GTNAC 3 cut(s) 4, 171, 200
MalI GATC 5 cut(s) 84, 311, 495, 729, 1031
MboI GATC 5 cut(s) 82, 309, 493, 727, 1029
MboII GAAGA 5 cut(s) 147, 285, 495, 589, 917
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 154, 373
MseI TTAA 8 cut(s) 95, 251, 354, 498, 543, 609, 716, 743
MslI CAYNNNNRTG 1 cut(s) 774
MspI CCGG 2 cut(s) 147, 929
MspR9I CCNGG 3 cut(s) 147, 148, 602
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 1 cut(s) 602
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 2 cut(s) 147, 148
NcoI CCATGG 1 cut(s) 167
NdeII GATC 5 cut(s) 82, 309, 493, 727, 1029
NlaIV GGNNCC 4 cut(s) 153, 370, 451, 1005
PaeR7I CTCGAG 1 cut(s) 651
PagI TCATGA 2 cut(s) 490, 730
PctI GAATGC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 751, 854
PkrI GCNGC 3 cut(s) 180, 703, 1068
Psp1406I AACGTT 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 600
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 4 cut(s) 153, 370, 451, 1005
PspPI GGNCC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 8 cut(s) 95, 251, 354, 498, 543, 609, 716, 743
SatI GCNGC 3 cut(s) 179, 702, 1067
Sau3AI GATC 5 cut(s) 82, 309, 493, 727, 1029
Sau96I GGNCC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 147, 148, 602
SduI GDGCHC 2 cut(s) 154, 373
Sfr274I CTCGAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 547
SlaI CTCGAG 1 cut(s) 651
SmaI CCCGGG 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 4 cut(s) 183, 211, 626, 651
SmoI CTYRAG 4 cut(s) 183, 211, 626, 651
SsiI CCGC 4 cut(s) 155, 386, 622, 1066
SspI AATATT 1 cut(s) 846
SspMI CTAG 3 cut(s) 41, 851, 933
StyD4I CCNGG 3 cut(s) 145, 146, 600
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 4 cut(s) 93, 336, 520, 645
TaiI ACGT 2 cut(s) 70, 445
TaqI TCGA 5 cut(s) 85, 271, 652, 675, 1076
TauI GCSGC 1 cut(s) 1069
TfiI GAWTC 2 cut(s) 751, 854
Tru1I TTAA 8 cut(s) 95, 251, 354, 498, 543, 609, 716, 743
Tru9I TTAA 8 cut(s) 95, 251, 354, 498, 543, 609, 716, 743
TscAI CASTG 3 cut(s) 235, 440, 1098
TseI GCWGC 2 cut(s) 178, 701
TspDTI ATGAA 5 cut(s) 174, 747, 780, 804, 882
TspGWI ACGGA 1 cut(s) 278
TspMI CCCGGG 1 cut(s) 146
TspRI CASTG 3 cut(s) 235, 440, 1098
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 1 cut(s) 791
XbaI TCTAGA 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 651
XmaI CCCGGG 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 338, 349
XspI CTAG 3 cut(s) 41, 851, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.