Rorug05G0546800

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000144
Physical Location & Seq
Forward (+)
73577187 .. 73578026
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0546800.1

Sequence Viewer

Length: 840 bp
ATGCTACCCCTTCCTCCTCCACCTGCATCTCCAATACCTCCTTCACCACTACTACAAGCCCAAAAGCAAACTAATCCCCTTCCTCCTCCACCTGCATCTCCAATACCACCTTCACCACTACTACAAGCCCAAAAGCAAACTAAGCCACATTCTCTAAATCAAATTATCATATCAAAGTATGCCCAGAATCAAGGCCTGGTGCTCGATGCAGCAGCAAATCATGAATCCAGAAAATCAGAAAAACAACCTATGCTCCGGCCACCTCAGGCTCGACGAACCAATCCACTTATATGGTGTTGTGCAATAGTATGTCTCATATTCAGCCTTATTCTTATCTTCTTTGGAATTGCAACTTTGATCATGTTCCTTGTTGTTAGACCTAGAATTCCATTGTTTGACATTCCTAATGCAAAGCTCAACACCATCTACTTTGACTCACCAGAGTATTTCAATGGTGACTTCGCTTTATTGGCAAATTTCTCCAACCCAAATCGGAAAATAGATGTAAGATTTGAGTATCTGCAGATGGAACTGTACTTTTCTGATAGGCTCATAGCAACTCAGTCTCTTGACCCTTTCACACAAAGACCTCGAGAAGGAAGGTTGGAAGCAGTTCACTTGGTATCCAGCTTGGTTTACTTGCCTGCGAATCACGCTGTGGCGCTTCGAACCCAGGTGCAGAACAATAGAGTCGACTATAATATAAGAGGAACATTTAGAGTGAGAGCCAGTCTGGGACTGATCCACTTTTCCTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGTCCACCGACTGGTGTTTTAGTTGCCCGAAGTTGCAGAACTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

279

Amino Acids

31.55

Weight (kDa)

10.07

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 161 - 256 1.9e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 31, 100
Acc36I ACCTGC 2 cut(s) 31, 100
AccB7I CCANNNNNTGG 1 cut(s) 800
AccI GTMKAC 1 cut(s) 693
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 2 cut(s) 384, 475
AdeI CACNNNGTG 1 cut(s) 658
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 2 cut(s) 596, 800
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 2 cut(s) 195, 672
AjuI GAANNNNNNNTTGG 4 cut(s) 25, 57, 94, 126
AluBI AGCT 2 cut(s) 415, 630
AluI AGCT 2 cut(s) 415, 630
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 317, 570
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 2 cut(s) 193, 257
ApeKI GCWGC 2 cut(s) 209, 212
ApoI RAATTY 2 cut(s) 384, 475
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 36, 105, 429, 467
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 1 cut(s) 791
AxyI CCTNAGG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 221, 224
BccI CCATC 2 cut(s) 431, 520
BciT130I CCWGG 2 cut(s) 197, 674
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 317, 570
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 2 cut(s) 31, 100
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
Bme1390I CCNGG 2 cut(s) 197, 674
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 791
BmrFI CCNGG 2 cut(s) 197, 674
BmsI GCATC 4 cut(s) 35, 104, 196, 761
Bpu14I TTCGAA 1 cut(s) 667
BsaJI CCNNGG 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 800
Bse1I ACTGG 3 cut(s) 729, 761, 805
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 197, 674
BseDI CCNNGG 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 596, 800
BseMII CTCAG 2 cut(s) 278, 575
BseNI ACTGG 3 cut(s) 729, 761, 805
BseRI GAGGAG 2 cut(s) 6, 75
BseXI GCAGC 2 cut(s) 221, 224
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 2 cut(s) 195, 259
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 596, 800
BsmAI GTCTC 2 cut(s) 317, 570
BsmFI GGGAC 1 cut(s) 750
BsnI GGCC 2 cut(s) 195, 259
BsoBI CYCGRG 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 357, 741
BspANI GGCC 2 cut(s) 195, 259
BspCNI CTCAG 2 cut(s) 277, 574
BspHI TCATGA 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 31, 100
BspPI GGATC 1 cut(s) 736
BspT104I TTCGAA 1 cut(s) 667
BsrI ACTGG 3 cut(s) 729, 761, 805
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 2 cut(s) 357, 741
Bst2UI CCWGG 2 cut(s) 197, 674
Bst4CI ACNGT 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 141, 264, 561
BstENI CCTNNNNNAGG 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 2 cut(s) 360, 744
BstMAI GTCTC 2 cut(s) 317, 570
BstMBI GATC 2 cut(s) 357, 741
BstMWI GCNNNNNNNGC 3 cut(s) 142, 470, 653
BstNI CCWGG 2 cut(s) 197, 674
BstSCI CCNGG 2 cut(s) 195, 672
BstSFI CTRYAG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 221, 224
BstXI CCANNNNNNTGG 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 2 cut(s) 195, 259
BveI ACCTGC 2 cut(s) 31, 100
Cac8I GCNNGC 1 cut(s) 645
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 791
Csp6I GTAC 1 cut(s) 535
CviAII CATG 2 cut(s) 221, 361
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 3 cut(s) 141, 264, 561
DpnI GATC 2 cut(s) 359, 743
DpnII GATC 2 cut(s) 357, 741
DraIII CACNNNGTG 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 791
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 591
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 195, 672
FaeI CATG 2 cut(s) 224, 364
FaqI GGGAC 1 cut(s) 750
FatI CATG 2 cut(s) 220, 360
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 2 cut(s) 210, 213
Fsp4HI GCNGC 2 cut(s) 210, 213
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 663
GluI GCNGC 2 cut(s) 210, 213
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 2 cut(s) 195, 259
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 664
Hin1II CATG 2 cut(s) 224, 364
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 5 cut(s) 187, 224, 434, 649, 690
HpaII CCGG 1 cut(s) 256
HphI GGTGA 4 cut(s) 36, 105, 429, 467
Hpy166II GTNNAC 4 cut(s) 616, 637, 694, 794
Hpy188I TCNGA 3 cut(s) 238, 495, 544
Hpy188III TCNNGA 4 cut(s) 221, 228, 569, 593
Hpy8I GTNNAC 4 cut(s) 616, 637, 694, 794
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 6 cut(s) 20, 51, 89, 120, 590, 594
HpyCH4III ACNGT 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 470, 653
HpyF3I CTNAG 3 cut(s) 141, 264, 561
Hsp92II CATG 2 cut(s) 224, 364
HspAI GCGC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 2 cut(s) 357, 741
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 2 cut(s) 221, 224
LweI GCATC 4 cut(s) 35, 104, 196, 761
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 455
MalI GATC 2 cut(s) 359, 743
MboI GATC 2 cut(s) 357, 741
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 5 cut(s) 162, 345, 384, 475, 776
MlyI GAGTC 2 cut(s) 428, 699
MmeI TCCRAC 2 cut(s) 507, 585
MnlI CCTC 8 cut(s) 24, 27, 48, 93, 96, 273, 600, 701
MroXI GAANNNNTTC 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 197, 674
MvaI CCWGG 2 cut(s) 197, 674
MwoI GCNNNNNNNGC 3 cut(s) 142, 470, 653
NdeII GATC 2 cut(s) 357, 741
NlaIII CATG 2 cut(s) 224, 364
NmuCI GTSAC 1 cut(s) 455
NspV TTCGAA 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 591
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 2 cut(s) 31, 100
PceI AGGCCT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 3 cut(s) 187, 224, 649
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 2 cut(s) 211, 214
PleI GAGTC 2 cut(s) 428, 698
PpsI GAGTC 2 cut(s) 428, 698
Psp6I CCWGG 2 cut(s) 195, 672
PspGI CCWGG 2 cut(s) 195, 672
PspPI GGNCC 1 cut(s) 791
PstI CTGCAG 1 cut(s) 525
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 289
SalI GTCGAC 1 cut(s) 692
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 2 cut(s) 357, 741
Sau96I GGNCC 1 cut(s) 791
SchI GAGTC 2 cut(s) 428, 699
ScrFI CCNGG 2 cut(s) 197, 674
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 4 cut(s) 35, 104, 196, 761
SfcI CTRYAG 1 cut(s) 521
Sfr274I CTCGAG 1 cut(s) 591
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 5 cut(s) 162, 345, 384, 475, 776
SseBI AGGCCT 1 cut(s) 195
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 195, 672
TaaI ACNGT 1 cut(s) 534
TaqI TCGA 5 cut(s) 204, 271, 592, 667, 693
TasI AATT 5 cut(s) 162, 345, 384, 475, 776
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 3 cut(s) 187, 224, 649
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 2 cut(s) 209, 212
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 791
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 2 cut(s) 384, 475
XhoI CTCGAG 1 cut(s) 591
XmiI GTMKAC 1 cut(s) 693
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.