Rmu_sc0003093.1_g000008

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003093.1
OG0000144
Physical Location & Seq
Reverse (-)
39478 .. 40734
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003093.1_g000008.1.cds

Sequence Viewer

Length: 1257 bp
atgagcaatggacaatcccgtaagaaacagaagaagatcattgggcattcccgtaagaaaacgagtaagatcaatgggcaatcccgttgcagttggcagacaccgccagacgatatcatggagtacattctacaacgtctgagtttatgggatcgaatacagttaaggatggtgtccaagtcttggaggtcagtagctatgcgaagagatattcgtagctctccaactgaactgccctggttactattgcctccatctgaatcaccacatctcagcaataacaactacataagctttttcagcctttctgatgcgaaagttcacaaactgacgctgcctagggcatttggaggaggatgggttcatgggtcttctaaaggttggttggttatggccaagggtgcatactctaaaatgtttttactaaaccctatttcaggtgcccaacaggaacttccatcgttaaaaactgtctttccatactatgcaattctcaaagagttgaaagcagagttggagggcacaaatgtcttggacagtttgtgtaatcaagttgtgttatctacctcggatatttattcagatgattgtattgtagcagcaatttttagggatcatatactggctttgtgcaaacctggagacaaaagatggaggaaagtcttggacttcaaggaatcagataggctgaagctttctgaaatattgttttcttgtggtatgctatatgccttggttgatcgttatggaaataacgagcttgttattccagctcgaaccgaaatctttggaggacacaagcaggaagtaaagttcgtctatgatagatatccactacgtttatatactatgcattggcaatgccaaccacacttgttagaatcaacctccaaaaatgaagtcttgttgatccatcaaatccaaaatatttatggggaaataacatcgtttatagtatacaagatggacggtgagactgaaaacttccatgaggtacaacacttgggagaacaaataatactcttatcagacttcggatcctcgtcgctcgcctcagctgcattgaaagggaatcgcatttattttgcaacacatgcttttaacaatcagcaatcaaaccttgctacgggtatattctacctaagcactggaagaattaagcaagatatttcttttgtcgatagatcagtattgctacggctgagcagttcagttgctagagaccgagggacttgttggtttactccgagtttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

418

Amino Acids

47.7

Weight (kDa)

9.32

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AccB7I CCANNNNNTGG 1 cut(s) 183
AccI GTMKAC 1 cut(s) 957
AciI CCGC 1 cut(s) 104
AclWI GGATC 5 cut(s) 159, 621, 904, 1032, 1045
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 2 cut(s) 125, 996
AfiI CCNNNNNNNGG 3 cut(s) 183, 437, 1126
AgsI TTSAA 3 cut(s) 505, 673, 1066
AjnI CCWGG 2 cut(s) 236, 637
AjuI GAANNNNNNNTTGG 4 cut(s) 438, 470, 497, 529
AloI GAACNNNNNNTCC 4 cut(s) 345, 377, 797, 829
AluBI AGCT 7 cut(s) 197, 219, 294, 694, 760, 773, 1058
AluI AGCT 7 cut(s) 197, 219, 294, 694, 760, 773, 1058
Alw26I GTCTC 3 cut(s) 636, 968, 1215
AlwI GGATC 5 cut(s) 159, 621, 904, 1032, 1045
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 3 cut(s) 334, 599, 1058
ArsI GACNNNNNNTTYG 2 cut(s) 885, 917
AspA2I CCTAGG 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 255, 983
AvrII CCTAGG 1 cut(s) 338
BaeGI GKGCMC 2 cut(s) 445, 524
BalI TGGCCA 1 cut(s) 395
BamHI GGATCC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 1054
BbvI GCAGC 3 cut(s) 321, 611, 1045
BccI CCATC 7 cut(s) 163, 262, 351, 466, 645, 921, 958
BceAI ACGGC 1 cut(s) 1214
BciT130I CCWGG 2 cut(s) 238, 639
BcoDI GTCTC 3 cut(s) 636, 968, 1215
BfaI CTAG 2 cut(s) 339, 1218
BisI GCNGC 3 cut(s) 335, 600, 1059
BlnI CCTAGG 1 cut(s) 338
BlpI GCTNAGC 1 cut(s) 1202
BlsI GCNGC 3 cut(s) 336, 601, 1060
Bme1390I CCNGG 2 cut(s) 238, 639
BmiI GGNNCC 2 cut(s) 442, 1039
BmrFI CCNGG 2 cut(s) 238, 639
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 2 cut(s) 1054, 1142
Bpu1102I GCTNAGC 1 cut(s) 1202
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 1215
BsaJI CCNNGG 6 cut(s) 236, 338, 396, 567, 732, 1225
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 437, 1126
Bse1I ACTGG 2 cut(s) 627, 1153
Bse3DI GCAATG 2 cut(s) 13, 866
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 238, 639
BseDI CCNNGG 6 cut(s) 236, 338, 396, 567, 732, 1225
BseGI GGATG 2 cut(s) 174, 362
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 183, 437, 1126
BseMI GCAATG 2 cut(s) 13, 866
BseMII CTCAG 4 cut(s) 131, 286, 1068, 1193
BseNI ACTGG 2 cut(s) 627, 1153
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 2 cut(s) 445, 524
BseXI GCAGC 3 cut(s) 321, 611, 1045
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 440
BslFI GGGAC 1 cut(s) 1243
BslI CCNNNNNNNGG 3 cut(s) 183, 437, 1126
BsmAI GTCTC 3 cut(s) 636, 968, 1215
BsmFI GGGAC 1 cut(s) 1243
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 1215
Bsp1286I GDGCHC 2 cut(s) 445, 524
Bsp143I GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
Bsp1720I GCTNAGC 1 cut(s) 1202
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 4 cut(s) 132, 285, 1067, 1194
BspLI GGNNCC 2 cut(s) 442, 1039
BspPI GGATC 5 cut(s) 159, 621, 904, 1032, 1045
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 1215
BsrDI GCAATG 2 cut(s) 13, 866
BsrI ACTGG 2 cut(s) 627, 1153
BssECI CCNNGG 6 cut(s) 236, 338, 396, 567, 732, 1225
BssMI GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
BssNAI GTATAC 1 cut(s) 958
BssT1I CCWWGG 3 cut(s) 338, 396, 732
Bst1107I GTATAC 1 cut(s) 958
Bst2UI CCWGG 2 cut(s) 238, 639
Bst4CI ACNGT 4 cut(s) 162, 472, 539, 971
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstC8I GCNNGC 1 cut(s) 1050
BstDEI CTNAG 5 cut(s) 140, 272, 1054, 1142, 1202
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 174, 362
BstKTI GATC 8 cut(s) 39, 72, 154, 616, 742, 912, 1040, 1187
BstMAI GTCTC 3 cut(s) 636, 968, 1215
BstMBI GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
BstMWI GCNNNNNNNGC 5 cut(s) 103, 300, 401, 1058, 1094
BstNI CCWGG 2 cut(s) 238, 639
BstNSI RCATGY 1 cut(s) 1097
BstSCI CCNGG 2 cut(s) 236, 637
BstSLI GKGCMC 2 cut(s) 445, 524
BstV1I GCAGC 3 cut(s) 321, 611, 1045
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 1037
BstZ17I GTATAC 1 cut(s) 958
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 174, 362
BtsIMutI CAGTG 1 cut(s) 1146
Cac8I GCNNGC 1 cut(s) 1050
CseI GACGC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 124, 995
CviAII CATG 4 cut(s) 118, 365, 989, 1094
CviQI GTAC 2 cut(s) 124, 995
DdeI CTNAG 5 cut(s) 140, 272, 1054, 1142, 1202
DpnI GATC 8 cut(s) 38, 71, 153, 615, 741, 911, 1039, 1186
DpnII GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 3 cut(s) 338, 396, 732
Eco31I GGTCTC 1 cut(s) 1215
Eco32I GATATC 2 cut(s) 115, 830
Eco57I CTGAAG 1 cut(s) 710
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 236, 637
EcoRV GATATC 2 cut(s) 115, 830
EcoT14I CCWWGG 3 cut(s) 338, 396, 732
EcoT22I ATGCAT 1 cut(s) 855
ErhI CCWWGG 3 cut(s) 338, 396, 732
FaeI CATG 4 cut(s) 121, 368, 992, 1097
FaqI GGGAC 1 cut(s) 1243
FatI CATG 4 cut(s) 117, 364, 988, 1093
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 3 cut(s) 335, 600, 1059
FokI GGATG 2 cut(s) 181, 369
Fsp4HI GCNGC 3 cut(s) 335, 600, 1059
FspBI CTAG 2 cut(s) 339, 1218
GluI GCNGC 3 cut(s) 335, 600, 1059
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 1 cut(s) 395
HgaI GACGC 1 cut(s) 340
Hin1II CATG 4 cut(s) 121, 368, 992, 1097
HindIII AAGCTT 2 cut(s) 292, 692
HinfI GANTC 4 cut(s) 260, 677, 881, 1072
HphI GGTGA 2 cut(s) 255, 983
Hpy166II GTNNAC 3 cut(s) 322, 958, 1242
Hpy8I GTNNAC 3 cut(s) 322, 958, 1242
Hpy99I CGWCG 1 cut(s) 1048
HpyCH4III ACNGT 4 cut(s) 162, 472, 539, 971
HpyCH4IV ACGT 2 cut(s) 136, 838
HpyCH4V TGCA 7 cut(s) 90, 404, 488, 633, 853, 1061, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 103, 300, 401, 1058, 1094
HpyF3I CTNAG 5 cut(s) 140, 272, 1054, 1142, 1202
HpySE526I ACGT 2 cut(s) 136, 838
Hsp92II CATG 4 cut(s) 121, 368, 992, 1097
Kzo9I GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
Lsp1109I GCAGC 3 cut(s) 321, 611, 1045
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 339, 1218
MaeII ACGT 2 cut(s) 136, 838
MaeIII GTNAC 1 cut(s) 240
MalI GATC 8 cut(s) 38, 71, 153, 615, 741, 911, 1039, 1186
MboI GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
MboII GAAGA 5 cut(s) 43, 46, 216, 363, 1164
MflI RGATCY 1 cut(s) 1037
MhlI GDGCHC 2 cut(s) 445, 524
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 3 cut(s) 489, 603, 1155
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 248, 495
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 855
MscI TGGCCA 1 cut(s) 395
MseI TTAA 4 cut(s) 164, 464, 1101, 1158
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 1058
MspR9I CCNGG 2 cut(s) 238, 639
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 238, 639
MwoI GCNNNNNNNGC 5 cut(s) 103, 300, 401, 1058, 1094
NdeII GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
NlaIII CATG 4 cut(s) 121, 368, 992, 1097
NlaIV GGNNCC 2 cut(s) 442, 1039
NsiI ATGCAT 1 cut(s) 855
NspI RCATGY 1 cut(s) 1097
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 4 cut(s) 260, 677, 881, 1072
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 3 cut(s) 336, 601, 1060
Psp6I CCWGG 2 cut(s) 236, 637
PspGI CCWGG 2 cut(s) 236, 637
PspN4I GGNNCC 2 cut(s) 442, 1039
PsrI GAACNNNNNNTAC 2 cut(s) 1002, 1034
PsuI RGATCY 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 2 cut(s) 125, 996
RsaNI GTAC 2 cut(s) 124, 995
SaqAI TTAA 4 cut(s) 164, 464, 1101, 1158
SatI GCNGC 3 cut(s) 335, 600, 1059
Sau3AI GATC 8 cut(s) 36, 69, 151, 613, 739, 909, 1037, 1184
ScrFI CCNGG 2 cut(s) 238, 639
SduI GDGCHC 2 cut(s) 445, 524
SfaNI GCATC 1 cut(s) 301
Sse9I AATT 3 cut(s) 489, 603, 1155
SsiI CCGC 1 cut(s) 104
SspI AATATT 2 cut(s) 705, 928
SspMI CTAG 2 cut(s) 339, 1218
StyD4I CCNGG 2 cut(s) 236, 637
StyI CCWWGG 3 cut(s) 338, 396, 732
TaaI ACNGT 4 cut(s) 162, 472, 539, 971
TaiI ACGT 2 cut(s) 139, 841
TaqI TCGA 3 cut(s) 154, 775, 1179
TaqII GACCGA 1 cut(s) 1239
TasI AATT 3 cut(s) 489, 603, 1155
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 4 cut(s) 260, 677, 881, 1072
Tru1I TTAA 4 cut(s) 164, 464, 1101, 1158
Tru9I TTAA 4 cut(s) 164, 464, 1101, 1158
TscAI CASTG 1 cut(s) 1153
TseI GCWGC 3 cut(s) 334, 599, 1058
TspDTI ATGAA 2 cut(s) 353, 912
TspRI CASTG 1 cut(s) 1153
Van91I CCANNNNNTGG 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 435
XceI RCATGY 1 cut(s) 1097
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XmaJI CCTAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 2 cut(s) 339, 1218
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.