FvH4_4g02150

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000144
Physical Location & Seq
Reverse (-)
1984088 .. 1985176
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02150.t1

Sequence Viewer

Length: 1044 bp
ATGATCATGGTCATGGAAAAGAATCTGGATTCTACTATGTTTCTTGTAAATCCAATATCAGGAGCGCAGCACCAACTTCCACCTTTGAGCACGACGCCATCTTTCCACAGTTTTGTAGAGACAACCACATGGAAACGCTACGGCGCTTCTGCTTTCTGCTATAGCGTTGTGCTATCTACCTCAGATATCACTTCACATCAATTTATGGTTGCAGCAACTTTTGGGGAGACTGATAGACTGTGTTTGTATAAACCGGGAGACAGAAAGTGGACTATCTTGGAGGTCTTAGATGCAAACGAGTGTATTACAGATTTATTGTTCTCTTCTGGCAAGCTATACGCCTTGGTTATTAGTCATAATAAGAATGGTGTCATTTCAGCTCCTTGCAACTTAAAATTTGGAGATCATGCAGTCGAACTGAAGCTGGTCTATGACAAAATACCAAGAAACAGTGACAGCTTTGAAGAATATGATGGCTATCTAGTCCACCTAAAAGGGGCAACAGACTCACATTTGGTAGAGTCAACTACCAATGATGAAATATTTTTGGTCCATCAAGTTCAAGATAGATTTGCAAAATGGTACGACAACAACCATGAGGACGATAACCATGACGGTGCTAATGAGGAAGACAACATGGAAGGTAATGAGGTTGGAGGTGAAGAAGTGAATGATATTGGCTCAAAAATCATTACTGTTGATGAAGATGATCATGACCTTAATTCATATTTGAGGACAAGTGATTTTAATGTATACAAGCTTCACCCAGAGGAGAAAAAGATTGCTGGTGTAAGAAACTTGGGGAGTCAACTGTTGTTTTTGTCAAGTGCAGGGGCATTGTCCCTTCCTGCAACAGATATCAACAACCTAAAAGGAAACTGCATTTATTTTGCAACTAATAACACCTTGAGTTTACATCCGCGAACATTTACAAGTAGAGAGATCGGTGTATTCAGCTTTGATGGGGGGAAAATTAAGCGACCTTTCCCTAGCGTTCATGTGTCGGTCCGATCTCGACTCAGTTGGTTTACTCCAAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

348

Amino Acids

38.9

Weight (kDa)

5.19

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 9 - 319 1e-34 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 922
AciI CCGC 1 cut(s) 920
AcsI RAATTY 2 cut(s) 395, 1036
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 2 cut(s) 59, 496
AgsI TTSAA 2 cut(s) 464, 563
AluBI AGCT 6 cut(s) 334, 380, 424, 459, 760, 957
AluI AGCT 6 cut(s) 334, 380, 424, 459, 760, 957
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 3 cut(s) 113, 221, 252
ApeKI GCWGC 2 cut(s) 67, 212
ApoI RAATTY 2 cut(s) 395, 1036
AspLEI GCGC 2 cut(s) 67, 146
AspS9I GGNCC 2 cut(s) 550, 1006
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 671, 755
AvaII GGWCC 2 cut(s) 550, 1006
BarI GAAGNNNNNNTAC 2 cut(s) 744, 776
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 79, 224
BccI CCATC 4 cut(s) 106, 467, 561, 956
BceAI ACGGC 1 cut(s) 157
BclI TGATCA 2 cut(s) 3, 709
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 113, 221, 252
BfaI CTAG 2 cut(s) 482, 990
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 68, 213
BlsI GCNGC 2 cut(s) 69, 214
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 550, 1006
BmgT120I GGNCC 2 cut(s) 550, 1006
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 928
BpuMI CCSGG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 496
Bse8I GATNNNNATC 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 916
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 59, 496
BseMII CTCAG 2 cut(s) 195, 1033
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 2 cut(s) 79, 224
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 2 cut(s) 59, 496
BsmAI GTCTC 3 cut(s) 113, 221, 252
BsmFI GGGAC 1 cut(s) 826
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 5 cut(s) 3, 403, 709, 942, 1010
BspACI CCGC 1 cut(s) 920
BspCNI CTCAG 2 cut(s) 194, 1032
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 1 cut(s) 712
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 5 cut(s) 3, 403, 709, 942, 1010
BssNAI GTATAC 1 cut(s) 754
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 754
Bst4CI ACNGT 6 cut(s) 110, 240, 452, 617, 697, 813
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 181, 286, 1019
BstF5I GGATG 1 cut(s) 916
BstFNI CGCG 1 cut(s) 922
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 67, 146
BstKTI GATC 5 cut(s) 6, 406, 712, 945, 1013
BstMAI GTCTC 3 cut(s) 113, 221, 252
BstMBI GATC 5 cut(s) 3, 403, 709, 942, 1010
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 79, 224
BstV2I GAAGAC 1 cut(s) 636
BstZ17I GTATAC 1 cut(s) 754
BtsCI GGATG 1 cut(s) 916
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 1 cut(s) 712
CfoI GCGC 2 cut(s) 67, 146
Cfr13I GGNCC 2 cut(s) 550, 1006
CpoI CGGWCCG 1 cut(s) 1006
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 583
CspI CGGWCCG 1 cut(s) 1006
CviAII CATG 9 cut(s) 7, 13, 129, 407, 596, 611, 637, 713, 998
CviJI RGCY 8 cut(s) 334, 380, 424, 459, 477, 681, 760, 957
CviKI_1 RGCY 8 cut(s) 334, 380, 424, 459, 477, 681, 760, 957
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 3 cut(s) 181, 286, 1019
DpnI GATC 5 cut(s) 5, 405, 711, 944, 1012
DpnII GATC 5 cut(s) 3, 403, 709, 942, 1010
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 342
Eco32I GATATC 2 cut(s) 187, 859
Eco47I GGWCC 2 cut(s) 550, 1006
Eco57I CTGAAG 1 cut(s) 440
EcoRV GATATC 2 cut(s) 187, 859
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 9 cut(s) 10, 16, 132, 410, 599, 614, 640, 716, 1001
FaqI GGGAC 1 cut(s) 826
FatI CATG 9 cut(s) 6, 12, 128, 406, 595, 610, 636, 712, 997
FbaI TGATCA 2 cut(s) 3, 709
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 2 cut(s) 68, 213
FokI GGATG 1 cut(s) 903
Fsp4HI GCNGC 2 cut(s) 68, 213
FspBI CTAG 2 cut(s) 482, 990
GlaI GCGC 2 cut(s) 66, 145
GluI GCNGC 2 cut(s) 68, 213
HaeII RGCGCY 1 cut(s) 147
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 67, 146
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 9 cut(s) 10, 16, 132, 410, 599, 614, 640, 716, 1001
Hin6I GCGC 2 cut(s) 65, 144
HinP1I GCGC 2 cut(s) 65, 144
HincII GTYRAC 2 cut(s) 525, 809
HindII GTYRAC 2 cut(s) 525, 809
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 6 cut(s) 22, 29, 506, 521, 805, 1017
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 671, 755
Hpy166II GTNNAC 7 cut(s) 270, 487, 525, 754, 809, 914, 1029
Hpy188I TCNGA 2 cut(s) 184, 1010
Hpy188III TCNNGA 5 cut(s) 26, 60, 563, 713, 1014
Hpy8I GTNNAC 7 cut(s) 270, 487, 525, 754, 809, 914, 1029
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 635, 854
HpyCH4III ACNGT 6 cut(s) 110, 240, 452, 617, 697, 813
HpyCH4V TGCA 9 cut(s) 212, 293, 387, 410, 575, 830, 851, 882, 893
HpyF3I CTNAG 3 cut(s) 181, 286, 1019
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 9 cut(s) 10, 16, 132, 410, 599, 614, 640, 716, 1001
HspAI GCGC 2 cut(s) 65, 144
Ksp22I TGATCA 2 cut(s) 3, 709
Kzo9I GATC 5 cut(s) 3, 403, 709, 942, 1010
LmnI GCTCC 2 cut(s) 62, 385
LpnPI CCDG 9 cut(s) 11, 45, 267, 312, 410, 771, 780, 816, 861
Lsp1109I GCAGC 2 cut(s) 79, 224
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 482, 990
MaeIII GTNAC 1 cut(s) 452
MalI GATC 5 cut(s) 5, 405, 711, 944, 1012
MboI GATC 5 cut(s) 3, 403, 709, 942, 1010
MboII GAAGA 5 cut(s) 315, 476, 641, 674, 716
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 5 cut(s) 200, 395, 721, 972, 1036
MlyI GAGTC 4 cut(s) 500, 530, 814, 1011
MmeI TCCRAC 1 cut(s) 634
MnlI CCTC 8 cut(s) 190, 274, 592, 619, 643, 650, 726, 763
MseI TTAA 4 cut(s) 392, 720, 747, 975
MslI CAYNNNNRTG 2 cut(s) 11, 615
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 922
NciI CCSGG 1 cut(s) 255
NdeII GATC 5 cut(s) 3, 403, 709, 942, 1010
NlaIII CATG 9 cut(s) 10, 16, 132, 410, 599, 614, 640, 716, 1001
NmuCI GTSAC 1 cut(s) 452
PagI TCATGA 1 cut(s) 712
PfeI GAWTC 2 cut(s) 22, 29
PkrI GCNGC 2 cut(s) 69, 214
PleI GAGTC 4 cut(s) 500, 529, 813, 1011
PpsI GAGTC 4 cut(s) 500, 529, 813, 1011
PspPI GGNCC 2 cut(s) 550, 1006
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 2 cut(s) 11, 615
Rsr2I CGGWCCG 1 cut(s) 1006
RsrII CGGWCCG 1 cut(s) 1006
SaqAI TTAA 4 cut(s) 392, 720, 747, 975
SatI GCNGC 2 cut(s) 68, 213
Sau3AI GATC 5 cut(s) 3, 403, 709, 942, 1010
Sau96I GGNCC 2 cut(s) 550, 1006
SchI GAGTC 4 cut(s) 500, 530, 814, 1011
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 2 cut(s) 550, 1006
SmiMI CAYNNNNRTG 2 cut(s) 11, 615
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
Sse9I AATT 5 cut(s) 200, 395, 721, 972, 1036
SsiI CCGC 1 cut(s) 920
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 482, 990
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 6 cut(s) 110, 240, 452, 617, 697, 813
TaqI TCGA 2 cut(s) 414, 1015
TaqII GACCGA 1 cut(s) 994
TasI AATT 5 cut(s) 200, 395, 721, 972, 1036
TfiI GAWTC 2 cut(s) 22, 29
Tru1I TTAA 4 cut(s) 392, 720, 747, 975
Tru9I TTAA 4 cut(s) 392, 720, 747, 975
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 67, 212
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 552, 714, 717, 986
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 550, 1006
XapI RAATTY 2 cut(s) 395, 1036
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 2 cut(s) 482, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.