FvH4_2g04887

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000144
Physical Location & Seq
Reverse (-)
3825514 .. 3826999
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04887.t1

Sequence Viewer

Length: 1290 bp
ATGACCTCGACGATGGAGATAAAGCAAAAGGAAGATCAATGCCGCGGCCGAACAGATCCTACTTGTTATAACTGTCTTGGCAATGTGTGTAGCTGTTGGCAGACACCGCCTGCAGATATCATGCAGAAGATTCTAGGGTATTTCTCTACTTTTAGCGATCTGATACGGATGAGAATTGTGTGCAAGTCTTGGAACTCAATTATAATGCGAAGAGACATCCGTGCCGCTCCTCCTTTTTTGTTTCCATGGTGTTCTATCCCCCCAGCCCCAGATTGCTGCAGGAAATACTTTTGTTTCGGCTCCGGGCGCAATTTGAAGCTCCCTAAGCGAGTTCGAGGTGGGTGGATTTACGGGTCGTCTAAAGAATCATTCACCGTGGCAGCAATTTTCAATGACAGGAAGACATTGGGTTTGTGCCGACCGGGAGACAAAGCATGGACTGTCACTCAAGTATTAGATATCAATGAAAACAGCCTCCTTTTTGACATATTATTTTCTTCCGGCAGTCGATATGCTTTGGTTAGGAGTGAAAATGAGGATGGCATCGTTGATGCAGCTACTCGCACCATAAACATTGGCTTTGGAGATCGTCTTGAAGAATTAAAGTTGAAGTTGGTTTATGACAAGCATGAAAACAAAAACAAGAGAATTATACATTATAGAGATCATGCCATAGTTACCAATGGATCGTACAACTCAATGTTGGTAGAATCAACCAACAGTGAGGTTCTGTTGATCCATCAAATGTTGGATTTTTCTTTGAAAACCCATTCTATCTATGAAGATGATGAGGGTCAAGAAGGCAATGATGACATTGGTGGTATTGGTGGCAACATAGAGGAAGATAATGAAGACATTGATCAAGATGATAGCGGTGATGAAGCCAACAATGAAGATCACGACTACGGTATTGCTGATGAAAATTTTGAAAATGATGGCGTTGATGAAGGTAATGGTAATGAAGAAGTCAACACTAGTGATGAAAATGCTAGCGGTGATGAAGCCAACAATGAAGATCACGACTACGATGAGGGTGATGAAAATTCTGAAAATGATGACGTTGATCAGGAAAGCATCATCAGAGGTGATGATGAGCATGAAGGAGAAGGTAATGGTAATGAAGAAGACAATACTATTGATGAAAATGTGCCTCGCTTCAATCCCCATTTAAGGACCAGGAATTTTATAGTTTACATGATTGACGCAGAAAAAGAAAACTTGATTCAACTGCAAAGCTTGGGCGACCAAATATTATTTTGCGGAAACGATGGTTCATTCTCCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

430

Amino Acids

48.42

Weight (kDa)

4.36

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 37 - 72 4.8e-06 F-box domain
F-box-like PF12937 37 - 70 9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 69, 203
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 45
AciI CCGC 7 cut(s) 43, 45, 107, 225, 873, 993, 1260
AclWI GGATC 3 cut(s) 50, 694, 730
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 3 cut(s) 922, 1042, 1180
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 1170
AgsI TTSAA 8 cut(s) 316, 391, 596, 610, 763, 929, 1159, 1226
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 1 cut(s) 1175
AluBI AGCT 4 cut(s) 93, 319, 557, 1236
AluI AGCT 4 cut(s) 93, 319, 557, 1236
Alw26I GTCTC 2 cut(s) 207, 420
AlwI GGATC 3 cut(s) 50, 694, 730
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 276, 380, 554
ApoI RAATTY 3 cut(s) 922, 1042, 1180
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 1173
AsuC2I CCSGG 2 cut(s) 304, 423
AsuHPI GGTGA 5 cut(s) 364, 887, 1007, 1046, 1097
AsuNHI GCTAGC 1 cut(s) 989
AvaII GGWCC 1 cut(s) 1173
BbsI GAAGAC 3 cut(s) 407, 858, 1131
BbvI GCAGC 3 cut(s) 263, 392, 566
BccI CCATC 5 cut(s) 7, 533, 747, 929, 1262
BciT130I CCWGG 1 cut(s) 1177
BclI TGATCA 2 cut(s) 859, 1063
BcnI CCSGG 2 cut(s) 304, 423
BcoDI GTCTC 2 cut(s) 207, 420
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 3 cut(s) 134, 975, 990
BfmI CTRYAG 2 cut(s) 111, 277
BisI GCNGC 6 cut(s) 43, 46, 225, 277, 381, 555
BlsI GCNGC 6 cut(s) 44, 47, 226, 278, 382, 556
Bme1390I CCNGG 3 cut(s) 304, 423, 1177
Bme18I GGWCC 1 cut(s) 1173
BmgT120I GGNCC 1 cut(s) 1173
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 3 cut(s) 304, 423, 1177
BmsI GCATC 3 cut(s) 541, 552, 1083
BmtI GCTAGC 1 cut(s) 993
BpiI GAAGAC 3 cut(s) 407, 858, 1131
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 304, 423
BsaJI CCNNGG 3 cut(s) 43, 245, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 1170
Bse3DI GCAATG 2 cut(s) 88, 811
BseBI CCWGG 1 cut(s) 1177
BseDI CCNNGG 3 cut(s) 43, 245, 375
BseGI GGATG 3 cut(s) 174, 216, 544
BseLI CCNNNNNNNGG 1 cut(s) 1170
BseMI GCAATG 2 cut(s) 88, 811
BseRI GAGGAG 1 cut(s) 219
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 263, 392, 566
BseYI CCCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 2 cut(s) 49, 422
BshFI GGCC 1 cut(s) 48
BsiEI CGRYCG 2 cut(s) 49, 422
BsiSI CCGG 3 cut(s) 303, 422, 501
BslI CCNNNNNNNGG 1 cut(s) 1170
BsmAI GTCTC 2 cut(s) 207, 420
BsnI GGCC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 7 cut(s) 43, 45, 107, 225, 873, 993, 1260
BspANI GGCC 1 cut(s) 48
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 2 cut(s) 115, 281
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 3 cut(s) 50, 694, 730
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 88, 811
BssECI CCNNGG 3 cut(s) 43, 245, 375
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 1177
Bst4CI ACNGT 5 cut(s) 74, 376, 442, 722, 908
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 111, 991
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 3 cut(s) 43, 245, 375
BstF5I GGATG 3 cut(s) 174, 216, 544
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 207, 420
BstMCI CGRYCG 2 cut(s) 49, 422
BstMWI GCNNNNNNNGC 3 cut(s) 106, 306, 325
BstNI CCWGG 1 cut(s) 1177
BstSCI CCNGG 3 cut(s) 302, 421, 1175
BstSFI CTRYAG 2 cut(s) 111, 277
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 263, 392, 566
BstV2I GAAGAC 3 cut(s) 407, 858, 1131
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 3 cut(s) 43, 245, 375
BtsCI GGATG 3 cut(s) 174, 216, 544
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 111, 991
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 1173
Cfr42I CCGCGG 1 cut(s) 46
CseI GACGC 1 cut(s) 1211
Csp6I GTAC 1 cut(s) 691
CviAII CATG 8 cut(s) 121, 246, 435, 629, 668, 1097, 1195, 1287
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 245
Eco32I GATATC 2 cut(s) 118, 460
Eco47I GGWCC 1 cut(s) 1173
Eco52I CGGCCG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 1175
EcoRV GATATC 2 cut(s) 118, 460
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 8 cut(s) 124, 249, 438, 632, 671, 1100, 1198, 1290
FatI CATG 8 cut(s) 120, 245, 434, 628, 667, 1096, 1194, 1286
FbaI TGATCA 2 cut(s) 859, 1063
Fnu4HI GCNGC 6 cut(s) 43, 46, 225, 277, 381, 555
FokI GGATG 3 cut(s) 181, 203, 551
Fsp4HI GCNGC 6 cut(s) 43, 46, 225, 277, 381, 555
FspBI CTAG 3 cut(s) 134, 975, 990
GlaI GCGC 1 cut(s) 308
GluI GCNGC 6 cut(s) 43, 46, 225, 277, 381, 555
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 303, 422, 501
HgaI GACGC 1 cut(s) 1211
HhaI GCGC 1 cut(s) 309
Hin1II CATG 8 cut(s) 124, 249, 438, 632, 671, 1100, 1198, 1290
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 4 cut(s) 130, 365, 710, 1222
HpaII CCGG 3 cut(s) 303, 422, 501
HphI GGTGA 5 cut(s) 364, 887, 1007, 1046, 1097
Hpy166II GTNNAC 2 cut(s) 970, 1192
Hpy188I TCNGA 3 cut(s) 162, 1048, 1082
Hpy188III TCNNGA 6 cut(s) 593, 797, 863, 899, 1019, 1067
Hpy8I GTNNAC 2 cut(s) 970, 1192
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 794, 941, 1094, 1100
HpyCH4III ACNGT 5 cut(s) 74, 376, 442, 722, 908
HpyCH4IV ACGT 1 cut(s) 1059
HpyCH4V TGCA 6 cut(s) 113, 124, 183, 279, 554, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 306, 325
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 8 cut(s) 124, 249, 438, 632, 671, 1100, 1198, 1290
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 2 cut(s) 859, 1063
KspI CCGCGG 1 cut(s) 46
LmnI GCTCC 3 cut(s) 232, 305, 324
Lsp1109I GCAGC 3 cut(s) 263, 392, 566
LweI GCATC 3 cut(s) 541, 552, 1083
MaeI CTAG 3 cut(s) 134, 975, 990
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 2 cut(s) 442, 676
MbiI CCGCTC 1 cut(s) 227
MflI RGATCY 1 cut(s) 55
MluCI AATT 9 cut(s) 174, 198, 310, 384, 599, 648, 922, 1042, 1180
MmeI TCCRAC 1 cut(s) 729
MseI TTAA 2 cut(s) 602, 1169
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 303, 422, 501
MspR9I CCNGG 3 cut(s) 304, 423, 1177
MvaI CCWGG 1 cut(s) 1177
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 106, 306, 325
NciI CCSGG 2 cut(s) 304, 423
NcoI CCATGG 1 cut(s) 245
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 8 cut(s) 124, 249, 438, 632, 671, 1100, 1198, 1290
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 130, 365, 710, 1222
PkrI GCNGC 6 cut(s) 44, 47, 226, 278, 382, 556
PsiI TTATAA 2 cut(s) 69, 203
Psp6I CCWGG 1 cut(s) 1175
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 1175
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 1173
PsrI GAACNNNNNNTAC 2 cut(s) 43, 75
PstI CTGCAG 2 cut(s) 115, 281
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 2 cut(s) 602, 1169
SatI GCNGC 6 cut(s) 43, 46, 225, 277, 381, 555
Sau96I GGNCC 1 cut(s) 1173
ScrFI CCNGG 3 cut(s) 304, 423, 1177
SfaNI GCATC 3 cut(s) 541, 552, 1083
SfcI CTRYAG 2 cut(s) 111, 277
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 1 cut(s) 1173
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 9 cut(s) 174, 198, 310, 384, 599, 648, 922, 1042, 1180
SsiI CCGC 7 cut(s) 43, 45, 107, 225, 873, 993, 1260
SspI AATATT 1 cut(s) 1251
SspMI CTAG 3 cut(s) 134, 975, 990
StyD4I CCNGG 3 cut(s) 302, 421, 1175
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 5 cut(s) 74, 376, 442, 722, 908
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 3 cut(s) 8, 334, 508
TasI AATT 9 cut(s) 174, 198, 310, 384, 599, 648, 922, 1042, 1180
TauI GCSGC 3 cut(s) 45, 48, 227
TfiI GAWTC 4 cut(s) 130, 365, 710, 1222
Tru1I TTAA 2 cut(s) 602, 1169
Tru9I TTAA 2 cut(s) 602, 1169
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 3 cut(s) 276, 380, 554
Tsp45I GTSAC 1 cut(s) 442
TspGWI ACGGA 2 cut(s) 181, 209
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 1173
XapI RAATTY 3 cut(s) 922, 1042, 1180
XspI CTAG 3 cut(s) 134, 975, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.