Rorug05G0354500

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000144
Physical Location & Seq
Reverse (-)
44313091 .. 44315026
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0354500.1

Sequence Viewer

Length: 918 bp
ATGTTCACTTATACAGTGACCCGCAACGAGGACGTCCATCATGGGATTATGATGGACTGCAATGGAGACGAGCAAACTAAAGCCAAATCTTGGATGCTACTAGTACCTTACATGCTGATGAACCCTATAGGGAATCACGACAATCTCTTCATCAATTACATATTCATGGGTGGGAAGAAAGTCACGGTAGAGGAGGGAAGAACTATGGTTGCTTCAACCGGGAATAATAAGGCACTACTTTACCGTGATGAGGCCTTATGCTTGGGTCCAGCCACAAATGTTTCCAGCTTTGAAAAGGCCAGTTCGTACAATGCAGCGGAGTTGTTTCGGGAATGGGTGGAGCACATAAGGACAGTGTGCAACCTTGATAGGTTCAACGGTTGCATGGAGAATTGCAAGAGGGCCGGGGGACATTGGTATCTAATGGTGGTTGATCTGGAAAAGAAGGTGGCTGAGGTTTGGGACAATCTCCCGACTCTGTCATTCGCAAGCAGTAGATGGGACCATGCACTCACAACACTGCGCCATCTTCACCATTGCTTTTACTTTGACAAGTTGAGGATGGAAGGGACCAACACTGACTTTGGGTTATTCAACTATGTTGAGCCTAATGATCTTCGAGCAAGGGTGCTTCTTCGATGTCTCAAAGCCCCTGATAATGAGAGGGTGTCGATTATACTAAGAGAAGCACGATCATTTACTGTTGAGAAGGCATCTGTGGGAGGTTTTAAGGAGGACAAGATAGTGGAGCCAAATGGATGGGTAGGGATTGATTTGTTTGAGTTTGATGAACTGGATGGTGAGTTGGGAGTTACTCAAGTTGGTGGTCCGAGTACAGCAGCAAATGGTGATTCAGGCATAGTGAAGAGGAACATGGACCGTAGGAGAGGTTTTCCTAAGGAAATGTTCCGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

305

Amino Acids

34.79

Weight (kDa)

5.89

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 2 cut(s) 22, 317
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 105, 308, 835
AfiI CCNNNNNNNGG 3 cut(s) 28, 90, 250
AgsI TTSAA 4 cut(s) 216, 293, 376, 595
AhlI ACTAGT 1 cut(s) 100
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 60, 647
AoxI GGCC 3 cut(s) 252, 297, 402
ApeKI GCWGC 2 cut(s) 314, 839
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 6 cut(s) 266, 402, 502, 570, 827, 877
AsuC2I CCSGG 2 cut(s) 220, 406
AsuHPI GGTGA 3 cut(s) 524, 812, 860
AvaII GGWCC 5 cut(s) 266, 502, 570, 827, 877
AxyI CCTNAGG 1 cut(s) 897
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 326, 851
BccI CCATC 7 cut(s) 45, 46, 492, 534, 556, 753, 791
BcnI CCSGG 2 cut(s) 220, 406
BcoDI GTCTC 2 cut(s) 60, 647
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 2 cut(s) 101, 916
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 315, 840
BlsI GCNGC 2 cut(s) 316, 841
Bme1390I CCNGG 2 cut(s) 220, 406
Bme18I GGWCC 5 cut(s) 266, 502, 570, 827, 877
BmgT120I GGNCC 6 cut(s) 266, 402, 502, 570, 827, 877
BmiI GGNNCC 4 cut(s) 267, 503, 571, 750
BmrFI CCNGG 2 cut(s) 220, 406
BmsI GCATC 2 cut(s) 84, 722
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 220, 406
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 90, 250
Bse1I ACTGG 2 cut(s) 300, 798
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 2 cut(s) 67, 535
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 4 cut(s) 99, 567, 764, 802
BseLI CCNNNNNNNGG 3 cut(s) 28, 90, 250
BseMI GCAATG 2 cut(s) 67, 535
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 300, 798
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 326, 851
BshFI GGCC 3 cut(s) 254, 299, 404
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 219, 405
BslFI GGGAC 4 cut(s) 423, 476, 515, 583
BslI CCNNNNNNNGG 3 cut(s) 28, 90, 250
BsmAI GTCTC 2 cut(s) 60, 647
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 4 cut(s) 423, 476, 515, 583
BsnI GGCC 3 cut(s) 254, 299, 404
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 433, 613, 692
BspACI CCGC 2 cut(s) 22, 317
BspANI GGCC 3 cut(s) 254, 299, 404
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 267, 503, 571, 750
BsrDI GCAATG 2 cut(s) 67, 535
BsrI ACTGG 2 cut(s) 300, 798
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 433, 613, 692
BssNI GRCGYC 1 cut(s) 33
Bst4CI ACNGT 7 cut(s) 16, 187, 245, 355, 380, 703, 881
Bst6I CTCTTC 2 cut(s) 152, 860
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 3 cut(s) 453, 680, 897
BstF5I GGATG 4 cut(s) 99, 567, 764, 802
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 436, 616, 695
BstMAI GTCTC 2 cut(s) 60, 647
BstMBI GATC 3 cut(s) 433, 613, 692
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 218, 404
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 326, 851
BstXI CCANNNNNNTGG 1 cut(s) 759
Bsu36I CCTNAGG 1 cut(s) 897
BsuRI GGCC 3 cut(s) 254, 299, 404
BtsCI GGATG 4 cut(s) 99, 567, 764, 802
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 4 cut(s) 21, 360, 518, 576
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 6 cut(s) 266, 402, 502, 570, 827, 877
Csp6I GTAC 3 cut(s) 104, 307, 834
CviAII CATG 6 cut(s) 41, 112, 166, 385, 506, 874
CviQI GTAC 3 cut(s) 104, 307, 834
DdeI CTNAG 3 cut(s) 453, 680, 897
DpnI GATC 3 cut(s) 435, 615, 694
DpnII GATC 3 cut(s) 433, 613, 692
Eam1104I CTCTTC 2 cut(s) 152, 860
EarI CTCTTC 2 cut(s) 152, 860
Eco147I AGGCCT 1 cut(s) 254
Eco47I GGWCC 5 cut(s) 266, 502, 570, 827, 877
Eco81I CCTNAGG 1 cut(s) 897
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 6 cut(s) 44, 115, 169, 388, 509, 877
FaqI GGGAC 4 cut(s) 423, 476, 515, 583
FatI CATG 6 cut(s) 40, 111, 165, 384, 505, 873
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 315, 840
FokI GGATG 4 cut(s) 106, 574, 771, 809
Fsp4HI GCNGC 2 cut(s) 315, 840
FspBI CTAG 2 cut(s) 101, 916
GlaI GCGC 1 cut(s) 524
GluI GCNGC 2 cut(s) 315, 840
HaeIII GGCC 3 cut(s) 254, 299, 404
HapII CCGG 2 cut(s) 219, 405
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 6 cut(s) 44, 115, 169, 388, 509, 877
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 3 cut(s) 133, 475, 851
HpaII CCGG 2 cut(s) 219, 405
HphI GGTGA 3 cut(s) 524, 812, 860
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 831
Hpy188III TCNNGA 4 cut(s) 137, 329, 437, 472
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 439, 560, 703
HpyCH4III ACNGT 7 cut(s) 16, 187, 245, 355, 380, 703, 881
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 60, 314, 360, 384, 396, 509
HpyF3I CTNAG 3 cut(s) 453, 680, 897
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 6 cut(s) 44, 115, 169, 388, 509, 877
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 3 cut(s) 433, 613, 692
LmnI GCTCC 2 cut(s) 340, 748
LpnPI CCDG 9 cut(s) 232, 282, 298, 313, 418, 422, 666, 779, 840
Lsp1109I GCAGC 2 cut(s) 326, 851
LweI GCATC 2 cut(s) 84, 722
MaeI CTAG 2 cut(s) 101, 916
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 16, 181, 811, 911
MalI GATC 3 cut(s) 435, 615, 694
MboI GATC 3 cut(s) 433, 613, 692
MboII GAAGA 7 cut(s) 139, 187, 210, 521, 608, 626, 877
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 154, 391
MlyI GAGTC 1 cut(s) 469
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 116, 164
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 219, 405
MspR9I CCNGG 2 cut(s) 220, 406
NciI CCSGG 2 cut(s) 220, 406
NdeII GATC 3 cut(s) 433, 613, 692
NlaIII CATG 6 cut(s) 44, 115, 169, 388, 509, 877
NlaIV GGNNCC 4 cut(s) 267, 503, 571, 750
NmuCI GTSAC 3 cut(s) 16, 181, 911
NspI RCATGY 1 cut(s) 115
PceI AGGCCT 1 cut(s) 254
PfeI GAWTC 2 cut(s) 133, 851
PflFI GACNNNGTC 1 cut(s) 478
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 316, 841
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PspN4I GGNNCC 4 cut(s) 267, 503, 571, 750
PspPI GGNCC 6 cut(s) 266, 402, 502, 570, 827, 877
PsyI GACNNNGTC 1 cut(s) 478
RsaI GTAC 3 cut(s) 105, 308, 835
RsaNI GTAC 3 cut(s) 104, 307, 834
RseI CAYNNNNRTG 2 cut(s) 116, 164
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 315, 840
Sau3AI GATC 3 cut(s) 433, 613, 692
Sau96I GGNCC 6 cut(s) 266, 402, 502, 570, 827, 877
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 2 cut(s) 220, 406
SduI GDGCHC 1 cut(s) 345
SetI ASST 9 cut(s) 36, 109, 290, 366, 374, 450, 459, 727, 892
SfaNI GCATC 2 cut(s) 84, 722
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 5 cut(s) 266, 502, 570, 827, 877
SmiMI CAYNNNNRTG 2 cut(s) 116, 164
SmlI CTYRAG 1 cut(s) 816
SmoI CTYRAG 1 cut(s) 816
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 2 cut(s) 154, 391
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 2 cut(s) 22, 317
SspMI CTAG 2 cut(s) 101, 916
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 218, 404
TaaI ACNGT 7 cut(s) 16, 187, 245, 355, 380, 703, 881
TaiI ACGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 619, 637, 671
TasI AATT 2 cut(s) 154, 391
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 2 cut(s) 133, 851
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 4 cut(s) 21, 360, 525, 583
TseFI GTSAC 3 cut(s) 16, 181, 911
TseI GCWGC 2 cut(s) 314, 839
Tsp45I GTSAC 3 cut(s) 16, 181, 911
TspDTI ATGAA 4 cut(s) 134, 139, 154, 804
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 21, 360, 525, 583
Tth111I GACNNNGTC 1 cut(s) 478
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 5 cut(s) 266, 502, 570, 827, 877
XceI RCATGY 1 cut(s) 115
XspI CTAG 2 cut(s) 101, 916
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.