Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dus | PF01207 | 9 - 279 | 4.2e-53 | Dihydrouridine synthase (Dus) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 83, 674 |
| AccBSI | CCGCTC | 1 cut(s) | 518 |
| AccII | CGCG | 1 cut(s) | 910 |
| AciI | CCGC | 4 cut(s) | 139, 308, 516, 910 |
| AclWI | GGATC | 3 cut(s) | 234, 554, 567 |
| AcuI | CTGAAG | 2 cut(s) | 752, 845 |
| AdeI | CACNNNGTG | 1 cut(s) | 289 |
| AfaI | GTAC | 2 cut(s) | 250, 264 |
| AflIII | ACRYGT | 1 cut(s) | 440 |
| AgsI | TTSAA | 4 cut(s) | 242, 500, 720, 857 |
| AhlI | ACTAGT | 1 cut(s) | 19 |
| AjiI | CACGTC | 2 cut(s) | 441, 757 |
| AluBI | AGCT | 3 cut(s) | 71, 124, 194 |
| AluI | AGCT | 3 cut(s) | 71, 124, 194 |
| Alw21I | GWGCWC | 2 cut(s) | 196, 706 |
| AlwI | GGATC | 3 cut(s) | 234, 554, 567 |
| Ama87I | CYCGRG | 1 cut(s) | 331 |
| AoxI | GGCC | 2 cut(s) | 267, 551 |
| ApaI | GGGCCC | 1 cut(s) | 271 |
| ApeKI | GCWGC | 5 cut(s) | 71, 278, 305, 365, 692 |
| AspLEI | GCGC | 2 cut(s) | 657, 910 |
| AspS9I | GGNCC | 3 cut(s) | 162, 267, 268 |
| AvaI | CYCGRG | 1 cut(s) | 331 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BaeGI | GKGCMC | 1 cut(s) | 271 |
| BamHI | GGATCC | 1 cut(s) | 559 |
| BanI | GGYRCC | 2 cut(s) | 83, 674 |
| BanII | GRGCYC | 2 cut(s) | 196, 271 |
| BbsI | GAAGAC | 1 cut(s) | 759 |
| Bbv12I | GWGCWC | 2 cut(s) | 196, 706 |
| BbvI | GCAGC | 5 cut(s) | 58, 265, 292, 352, 679 |
| BceAI | ACGGC | 2 cut(s) | 115, 640 |
| BciVI | GTATCC | 1 cut(s) | 466 |
| BcuI | ACTAGT | 1 cut(s) | 19 |
| BfaI | CTAG | 3 cut(s) | 20, 68, 905 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BfuI | GTATCC | 1 cut(s) | 466 |
| BglII | AGATCT | 1 cut(s) | 901 |
| BisI | GCNGC | 6 cut(s) | 72, 279, 306, 366, 693, 911 |
| BlsI | GCNGC | 6 cut(s) | 73, 280, 307, 367, 694, 912 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmeT110I | CYCGRG | 1 cut(s) | 331 |
| BmgBI | CACGTC | 2 cut(s) | 441, 757 |
| BmgT120I | GGNCC | 3 cut(s) | 162, 267, 268 |
| BmiI | GGNNCC | 5 cut(s) | 85, 163, 269, 561, 676 |
| BmrI | ACTGGG | 1 cut(s) | 516 |
| BmsI | GCATC | 4 cut(s) | 247, 605, 666, 792 |
| BmuI | ACTGGG | 1 cut(s) | 516 |
| BpiI | GAAGAC | 1 cut(s) | 759 |
| Bsa29I | ATCGAT | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 5 cut(s) | 33, 332, 554, 746, 894 |
| BsaWI | WCCGGW | 1 cut(s) | 862 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 183, 213 |
| Bse1I | ACTGG | 2 cut(s) | 511, 611 |
| BseCI | ATCGAT | 1 cut(s) | 114 |
| BseDI | CCNNGG | 5 cut(s) | 33, 332, 554, 746, 894 |
| BseGI | GGATG | 1 cut(s) | 848 |
| BseMII | CTCAG | 1 cut(s) | 482 |
| BseNI | ACTGG | 2 cut(s) | 511, 611 |
| BseRI | GAGGAG | 3 cut(s) | 430, 714, 938 |
| BseSI | GKGCMC | 1 cut(s) | 271 |
| BseXI | GCAGC | 5 cut(s) | 58, 265, 292, 352, 679 |
| Bsh1236I | CGCG | 1 cut(s) | 910 |
| Bsh1285I | CGRYCG | 1 cut(s) | 139 |
| BshFI | GGCC | 2 cut(s) | 269, 553 |
| BshNI | GGYRCC | 2 cut(s) | 83, 674 |
| BshVI | ATCGAT | 1 cut(s) | 114 |
| BsiEI | CGRYCG | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 196, 706 |
| BsiHKCI | CYCGRG | 1 cut(s) | 331 |
| BsiSI | CCGG | 1 cut(s) | 863 |
| BslFI | GGGAC | 2 cut(s) | 61, 199 |
| BsmFI | GGGAC | 2 cut(s) | 61, 199 |
| BsmI | GAATGC | 1 cut(s) | 718 |
| BsnI | GGCC | 2 cut(s) | 269, 553 |
| BsoBI | CYCGRG | 1 cut(s) | 331 |
| Bsp120I | GGGCCC | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 3 cut(s) | 196, 271, 706 |
| Bsp143I | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| Bsp19I | CCATGG | 2 cut(s) | 33, 746 |
| BspACI | CCGC | 4 cut(s) | 139, 308, 516, 910 |
| BspANI | GGCC | 2 cut(s) | 269, 553 |
| BspCNI | CTCAG | 1 cut(s) | 481 |
| BspDI | ATCGAT | 1 cut(s) | 114 |
| BspFNI | CGCG | 1 cut(s) | 910 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 5 cut(s) | 85, 163, 269, 561, 676 |
| BspPI | GGATC | 3 cut(s) | 234, 554, 567 |
| BspQI | GCTCTTC | 1 cut(s) | 773 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 674 |
| BsrBI | CCGCTC | 1 cut(s) | 518 |
| BsrI | ACTGG | 2 cut(s) | 511, 611 |
| BssECI | CCNNGG | 5 cut(s) | 33, 332, 554, 746, 894 |
| BssMI | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| BssT1I | CCWWGG | 3 cut(s) | 33, 746, 894 |
| Bst4CI | ACNGT | 2 cut(s) | 83, 478 |
| Bst6I | CTCTTC | 2 cut(s) | 532, 773 |
| BstDEI | CTNAG | 1 cut(s) | 468 |
| BstDSI | CCRYGG | 3 cut(s) | 33, 554, 746 |
| BstF5I | GGATG | 1 cut(s) | 848 |
| BstFNI | CGCG | 1 cut(s) | 910 |
| BstHHI | GCGC | 2 cut(s) | 657, 910 |
| BstKTI | GATC | 5 cut(s) | 118, 229, 388, 562, 904 |
| BstMBI | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| BstMCI | CGRYCG | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 266, 275, 674, 701 |
| BstNSI | RCATGY | 1 cut(s) | 213 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstSLI | GKGCMC | 1 cut(s) | 271 |
| BstUI | CGCG | 1 cut(s) | 910 |
| BstV1I | GCAGC | 5 cut(s) | 58, 265, 292, 352, 679 |
| BstV2I | GAAGAC | 1 cut(s) | 759 |
| BstX2I | RGATCY | 2 cut(s) | 559, 901 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 570 |
| BstYI | RGATCY | 2 cut(s) | 559, 901 |
| Bsu15I | ATCGAT | 1 cut(s) | 114 |
| BsuI | GTATCC | 1 cut(s) | 466 |
| BsuRI | GGCC | 2 cut(s) | 269, 553 |
| BsuTUI | ATCGAT | 1 cut(s) | 114 |
| BtgI | CCRYGG | 3 cut(s) | 33, 554, 746 |
| BtgZI | GCGATG | 1 cut(s) | 642 |
| BtrI | CACGTC | 2 cut(s) | 441, 757 |
| BtsCI | GGATG | 1 cut(s) | 848 |
| BtsIMutI | CAGTG | 1 cut(s) | 821 |
| CciI | TCATGA | 1 cut(s) | 394 |
| CfoI | GCGC | 2 cut(s) | 657, 910 |
| Cfr13I | GGNCC | 3 cut(s) | 162, 267, 268 |
| ClaI | ATCGAT | 1 cut(s) | 114 |
| Csp6I | GTAC | 2 cut(s) | 249, 263 |
| CviAII | CATG | 6 cut(s) | 34, 210, 395, 424, 530, 747 |
| CviJI | RGCY | 8 cut(s) | 71, 124, 194, 269, 553, 692, 875, 913 |
| CviKI_1 | RGCY | 8 cut(s) | 71, 124, 194, 269, 553, 692, 875, 913 |
| CviQI | GTAC | 2 cut(s) | 249, 263 |
| DdeI | CTNAG | 1 cut(s) | 468 |
| DpnI | GATC | 5 cut(s) | 117, 228, 387, 561, 903 |
| DpnII | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| DraIII | CACNNNGTG | 1 cut(s) | 289 |
| Eam1104I | CTCTTC | 2 cut(s) | 532, 773 |
| EarI | CTCTTC | 2 cut(s) | 532, 773 |
| Ecl136II | GAGCTC | 1 cut(s) | 194 |
| Eco130I | CCWWGG | 3 cut(s) | 33, 746, 894 |
| Eco24I | GRGCYC | 2 cut(s) | 196, 271 |
| Eco32I | GATATC | 1 cut(s) | 589 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| Eco53kI | GAGCTC | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 2 cut(s) | 752, 845 |
| Eco88I | CYCGRG | 1 cut(s) | 331 |
| EcoICRI | GAGCTC | 1 cut(s) | 194 |
| EcoO109I | RGGNCCY | 1 cut(s) | 268 |
| EcoRV | GATATC | 1 cut(s) | 589 |
| EcoT14I | CCWWGG | 3 cut(s) | 33, 746, 894 |
| EcoT38I | GRGCYC | 2 cut(s) | 196, 271 |
| ErhI | CCWWGG | 3 cut(s) | 33, 746, 894 |
| FaeI | CATG | 6 cut(s) | 37, 213, 398, 427, 533, 750 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 770, 802 |
| FaqI | GGGAC | 2 cut(s) | 61, 199 |
| FatI | CATG | 6 cut(s) | 33, 209, 394, 423, 529, 746 |
| Fnu4HI | GCNGC | 6 cut(s) | 72, 279, 306, 366, 693, 911 |
| FokI | GGATG | 1 cut(s) | 835 |
| FriOI | GRGCYC | 2 cut(s) | 196, 271 |
| Fsp4HI | GCNGC | 6 cut(s) | 72, 279, 306, 366, 693, 911 |
| FspBI | CTAG | 3 cut(s) | 20, 68, 905 |
| GlaI | GCGC | 2 cut(s) | 656, 909 |
| GluI | GCNGC | 6 cut(s) | 72, 279, 306, 366, 693, 911 |
| HaeIII | GGCC | 2 cut(s) | 269, 553 |
| HapII | CCGG | 1 cut(s) | 863 |
| HhaI | GCGC | 2 cut(s) | 657, 910 |
| Hin1II | CATG | 6 cut(s) | 37, 213, 398, 427, 533, 750 |
| Hin6I | GCGC | 2 cut(s) | 655, 908 |
| HinP1I | GCGC | 2 cut(s) | 655, 908 |
| HinfI | GANTC | 3 cut(s) | 49, 448, 890 |
| HpaII | CCGG | 1 cut(s) | 863 |
| Hpy188I | TCNGA | 4 cut(s) | 206, 256, 732, 889 |
| Hpy188III | TCNNGA | 2 cut(s) | 395, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 3 cut(s) | 175, 727, 820 |
| HpyCH4III | ACNGT | 2 cut(s) | 83, 478 |
| HpyCH4IV | ACGT | 3 cut(s) | 440, 756, 771 |
| HpyCH4V | TGCA | 3 cut(s) | 368, 545, 695 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 266, 275, 674, 701 |
| HpyF3I | CTNAG | 1 cut(s) | 468 |
| HpySE526I | ACGT | 3 cut(s) | 440, 756, 771 |
| Hsp92II | CATG | 6 cut(s) | 37, 213, 398, 427, 533, 750 |
| HspAI | GCGC | 2 cut(s) | 655, 908 |
| Kzo9I | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| LguI | GCTCTTC | 1 cut(s) | 773 |
| LmnI | GCTCC | 2 cut(s) | 191, 701 |
| LpnPI | CCDG | 7 cut(s) | 174, 455, 492, 576, 624, 657, 876 |
| Lsp1109I | GCAGC | 5 cut(s) | 58, 265, 292, 352, 679 |
| LweI | GCATC | 4 cut(s) | 247, 605, 666, 792 |
| MaeI | CTAG | 3 cut(s) | 20, 68, 905 |
| MaeII | ACGT | 3 cut(s) | 440, 756, 771 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 5 cut(s) | 117, 228, 387, 561, 903 |
| MbiI | CCGCTC | 1 cut(s) | 518 |
| MboI | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| MboII | GAAGA | 6 cut(s) | 546, 549, 764, 790, 911, 940 |
| MflI | RGATCY | 2 cut(s) | 559, 901 |
| MhlI | GDGCHC | 3 cut(s) | 196, 271, 706 |
| MluCI | AATT | 6 cut(s) | 108, 155, 482, 495, 720, 976 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MseI | TTAA | 4 cut(s) | 804, 882, 945, 979 |
| MspI | CCGG | 1 cut(s) | 863 |
| Mva1269I | GAATGC | 1 cut(s) | 718 |
| MvnI | CGCG | 1 cut(s) | 910 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 266, 275, 674, 701 |
| NcoI | CCATGG | 2 cut(s) | 33, 746 |
| NdeII | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| NlaIII | CATG | 6 cut(s) | 37, 213, 398, 427, 533, 750 |
| NlaIV | GGNNCC | 5 cut(s) | 85, 163, 269, 561, 676 |
| NmuCI | GTSAC | 1 cut(s) | 436 |
| NspI | RCATGY | 1 cut(s) | 213 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PciSI | GCTCTTC | 1 cut(s) | 773 |
| PctI | GAATGC | 1 cut(s) | 718 |
| PfeI | GAWTC | 2 cut(s) | 448, 890 |
| PkrI | GCNGC | 6 cut(s) | 73, 280, 307, 367, 694, 912 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 1 cut(s) | 196 |
| PspN4I | GGNNCC | 5 cut(s) | 85, 163, 269, 561, 676 |
| PspOMI | GGGCCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 3 cut(s) | 162, 267, 268 |
| PsuI | RGATCY | 2 cut(s) | 559, 901 |
| RsaI | GTAC | 2 cut(s) | 250, 264 |
| RsaNI | GTAC | 2 cut(s) | 249, 263 |
| SacI | GAGCTC | 1 cut(s) | 196 |
| SapI | GCTCTTC | 1 cut(s) | 773 |
| SaqAI | TTAA | 4 cut(s) | 804, 882, 945, 979 |
| SatI | GCNGC | 6 cut(s) | 72, 279, 306, 366, 693, 911 |
| Sau3AI | GATC | 5 cut(s) | 115, 226, 385, 559, 901 |
| Sau96I | GGNCC | 3 cut(s) | 162, 267, 268 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 3 cut(s) | 196, 271, 706 |
| SetI | ASST | 9 cut(s) | 73, 98, 126, 196, 338, 443, 676, 759, 774 |
| SfaNI | GCATC | 4 cut(s) | 247, 605, 666, 792 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| SinI | GGWCC | 1 cut(s) | 162 |
| SpeI | ACTAGT | 1 cut(s) | 19 |
| Sse9I | AATT | 6 cut(s) | 108, 155, 482, 495, 720, 976 |
| SsiI | CCGC | 4 cut(s) | 139, 308, 516, 910 |
| SspMI | CTAG | 3 cut(s) | 20, 68, 905 |
| SstI | GAGCTC | 1 cut(s) | 196 |
| StyI | CCWWGG | 3 cut(s) | 33, 746, 894 |
| TaaI | ACNGT | 2 cut(s) | 83, 478 |
| TaiI | ACGT | 3 cut(s) | 443, 759, 774 |
| TaqI | TCGA | 3 cut(s) | 114, 229, 451 |
| TasI | AATT | 6 cut(s) | 108, 155, 482, 495, 720, 976 |
| TauI | GCSGC | 1 cut(s) | 913 |
| TfiI | GAWTC | 2 cut(s) | 448, 890 |
| Tru1I | TTAA | 4 cut(s) | 804, 882, 945, 979 |
| Tru9I | TTAA | 4 cut(s) | 804, 882, 945, 979 |
| TscAI | CASTG | 1 cut(s) | 828 |
| TseFI | GTSAC | 1 cut(s) | 436 |
| TseI | GCWGC | 5 cut(s) | 71, 278, 305, 365, 692 |
| Tsp45I | GTSAC | 1 cut(s) | 436 |
| TspDTI | ATGAA | 3 cut(s) | 383, 518, 837 |
| TspGWI | ACGGA | 1 cut(s) | 424 |
| TspRI | CASTG | 1 cut(s) | 828 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| XceI | RCATGY | 1 cut(s) | 213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 172 |
| XspI | CTAG | 3 cut(s) | 20, 68, 905 |