Rh6DG059800

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000144
Physical Location & Seq
Forward (+)
6114511 .. 6115062
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG059800.1

Sequence Viewer

Length: 552 bp
ATGCTAGATTATGTTTTGTGCAGAGAAGGTGCTGGTGATATCAATGACATTGAAGACGACGACGGCAATAATAATCAGGAAGGCGTTGATCAAGATAATGATGGTGATGAAGGCAATCATGAGAATGATCATGAGGAAGGCAACTTGGAAGCTAATAATCAAGATGGAGGAGAAATTGATGATGTTGAATATGTTATTGATGAAGACGCGCCCGCCTTTAATCCACATGTCACAACAAGGAGTTTTAGAGTATACAAGATTGATCCAAATAATAACAATTTGCTTCCAGTGCAGAACTTGGGGGACCAAGTGTTCTTTATGGGAGATGGAGGTGGTTCTGTCTCTCTTCCGGCTGGTAATTTCCCAGAAGTAAAAAGGAATTGTATTTATTTTGCAACAAATTATGTATGGAATGTGGAATTGACTCCTAAAACATATAGGTCTCGTGAGATTGGCATATTCTACTTAGATGGTGAAAGAATTAGACGGTCTTTTTCGAGTGTCAAAATATCATTGTCGTATCAAGCCACATGGTTCACTCCAAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

183

Amino Acids

20.6

Weight (kDa)

4.15

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 74 - 154 2.3e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 550
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 53, 188
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 346, 447
AlwI GGATC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 47, 116, 485
AvaII GGWCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 60, 210
BccI CCATC 4 cut(s) 95, 158, 320, 464
BceAI ACGGC 1 cut(s) 79
BclI TGATCA 2 cut(s) 88, 127
BcoDI GTCTC 2 cut(s) 346, 447
BfaI CTAG 1 cut(s) 5
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 305
BpiI GAAGAC 2 cut(s) 60, 210
BsaI GGTCTC 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 40, 311
Bsh1236I CGCG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 346, 447
BsmFI GGGAC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 88, 127, 262
BspACI CCGC 1 cut(s) 213
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 2 cut(s) 118, 130
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 447
BsrI ACTGG 1 cut(s) 287
BssMI GATC 3 cut(s) 88, 127, 262
BssNAI GTATAC 1 cut(s) 253
BssSI CACGAG 1 cut(s) 444
Bst1107I GTATAC 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 91, 130, 265
BstMAI GTCTC 2 cut(s) 346, 447
BstMBI GATC 3 cut(s) 88, 127, 262
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 230
BstUI CGCG 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 60, 210
BstZ17I GTATAC 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 213
CciI TCATGA 2 cut(s) 118, 130
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 215
CviAII CATG 4 cut(s) 119, 131, 227, 531
CviJI RGCY 3 cut(s) 152, 353, 527
CviKI_1 RGCY 3 cut(s) 152, 353, 527
DdeI CTNAG 1 cut(s) 466
DpnI GATC 3 cut(s) 90, 129, 264
DpnII GATC 3 cut(s) 88, 127, 262
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 304
EcoRV GATATC 1 cut(s) 40
FaeI CATG 4 cut(s) 122, 134, 230, 534
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 118, 130, 226, 530
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 2 cut(s) 88, 127
FblI GTMKAC 1 cut(s) 252
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 210
HapII CCGG 1 cut(s) 350
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 122, 134, 230, 534
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 1 cut(s) 424
HpaII CCGG 1 cut(s) 350
HphI GGTGA 3 cut(s) 47, 116, 485
Hpy166II GTNNAC 2 cut(s) 253, 537
Hpy188III TCNNGA 6 cut(s) 77, 92, 119, 131, 161, 446
Hpy8I GTNNAC 2 cut(s) 253, 537
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 4 cut(s) 20, 74, 104, 131
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 21, 292, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 466
Hsp92II CATG 4 cut(s) 122, 134, 230, 534
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 2 cut(s) 88, 127
Kzo9I GATC 3 cut(s) 88, 127, 262
LpnPI CCDG 6 cut(s) 18, 62, 300, 339, 363, 378
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 229
MalI GATC 3 cut(s) 90, 129, 264
MboI GATC 3 cut(s) 88, 127, 262
MboII GAAGA 3 cut(s) 65, 215, 338
MluCI AATT 7 cut(s) 174, 277, 358, 379, 400, 419, 480
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 3 cut(s) 127, 161, 323
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeII GATC 3 cut(s) 88, 127, 262
NlaIII CATG 4 cut(s) 122, 134, 230, 534
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 230
PagI TCATGA 2 cut(s) 118, 130
PciI ACATGT 1 cut(s) 226
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PscI ACATGT 1 cut(s) 226
PsiI TTATAA 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 3 cut(s) 88, 127, 262
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 418
SetI ASST 4 cut(s) 31, 154, 334, 443
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 7 cut(s) 174, 277, 358, 379, 400, 419, 480
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 497
TasI AATT 7 cut(s) 174, 277, 358, 379, 400, 419, 480
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 123, 216
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.