Rh3DG220900

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
20692829 .. 20693415
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG220900.1

Sequence Viewer

Length: 537 bp
ATGGCAGCGATCAATGGTCAATCCCGTAAGAAAAATAATATGAGCAATGGACAATCCCGTAAGAAACAGAAGAAGATCAATGGGCATTCCCGTAAGAAAACGAGTAAGATCAATGGGCAATCCCGTTGCAGTTGGCAGACACTGCCAGACGATATCATGGAGTACATTCTACAACGTCTGAGTTTATGGGATCGAATACAGTTAAGGATGGTGTCCAAGTCTTGGAGGTCAGTAGCTATGCGAAGAGATATTCGTAGCTCTCCAACTGAAATACCCTGGTTACTATTGCCTCCATCTGAATCACCAAATCTCAGCAATAACAACTACATAAGCTTTTTCAGCCTTTCTGATGCCAAAGTTCACAAACTGACGCTGCCTAGGGCATTTGGAGGAGGATGGGTTCATGGGTCTTCTAAAGGTTGGTTGGTTATGGTCAAGGGAACTTCCATCGTTAAAAACTGTCTTTCCATACTTCGCAATTCTCAAAGAGTTGAAAGCAGAGTTGGAGGGCACACATGTCTTGGACAATTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

20.18

Weight (kDa)

11.03

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 45 - 83 9.5e-11 F-box domain
F-box-like PF12937 45 - 81 8.4e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AclWI GGATC 1 cut(s) 198
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 494
AjnI CCWGG 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 3 cut(s) 236, 258, 333
AluI AGCT 3 cut(s) 236, 258, 333
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 5, 373
AspA2I CCTAGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 294
AvrII CCTAGG 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 17, 360
BccI CCATC 4 cut(s) 202, 301, 390, 455
BciT130I CCWGG 1 cut(s) 277
BfaI CTAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 6, 374
BlnI CCTAGG 1 cut(s) 377
BlsI GCNGC 2 cut(s) 7, 375
Bme1390I CCNGG 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 275, 377
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 275, 377
BseGI GGATG 2 cut(s) 213, 401
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 170, 325
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 2 cut(s) 17, 360
BslI CCNNNNNNNGG 1 cut(s) 222
BsmI GAATGC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 9, 75, 108, 190
BspCNI CTCAG 2 cut(s) 171, 324
BspPI GGATC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 275, 377
BssMI GATC 4 cut(s) 9, 75, 108, 190
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 201, 461
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 179, 311
BstF5I GGATG 2 cut(s) 213, 401
BstKTI GATC 4 cut(s) 12, 78, 111, 193
BstMBI GATC 4 cut(s) 9, 75, 108, 190
BstMWI GCNNNNNNNGC 2 cut(s) 142, 339
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 17, 360
BstV2I GAAGAC 1 cut(s) 402
BtsCI GGATG 2 cut(s) 213, 401
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 142
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 157, 404, 516
CviJI RGCY 4 cut(s) 236, 258, 333, 342
CviKI_1 RGCY 4 cut(s) 236, 258, 333, 342
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 179, 311
DpnI GATC 4 cut(s) 11, 77, 110, 192
DpnII GATC 4 cut(s) 9, 75, 108, 190
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 377
Eco32I GATATC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 275
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 160, 407, 519
FaiI YATR 9 cut(s) 41, 158, 187, 239, 329, 405, 431, 470, 517
FatI CATG 3 cut(s) 156, 403, 515
Fnu4HI GCNGC 2 cut(s) 6, 374
FokI GGATG 2 cut(s) 220, 408
Fsp4HI GCNGC 2 cut(s) 6, 374
FspBI CTAG 1 cut(s) 378
GluI GCNGC 2 cut(s) 6, 374
HgaI GACGC 1 cut(s) 379
Hin1II CATG 3 cut(s) 160, 407, 519
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 299
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 180, 298, 349
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 201, 461
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 339
HpyF3I CTNAG 2 cut(s) 179, 311
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 160, 407, 519
Kzo9I GATC 4 cut(s) 9, 75, 108, 190
LpnPI CCDG 3 cut(s) 159, 262, 289
Lsp1109I GCAGC 2 cut(s) 17, 360
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 279
MalI GATC 4 cut(s) 11, 77, 110, 192
MboI GATC 4 cut(s) 9, 75, 108, 190
MboII GAAGA 4 cut(s) 82, 85, 255, 402
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 2 cut(s) 478, 527
MmeI TCCRAC 2 cut(s) 287, 484
MnlI CCTC 5 cut(s) 219, 300, 383, 386, 500
MseI TTAA 2 cut(s) 203, 453
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 142, 339
NdeII GATC 4 cut(s) 9, 75, 108, 190
NlaIII CATG 3 cut(s) 160, 407, 519
NspI RCATGY 1 cut(s) 519
PciI ACATGT 1 cut(s) 515
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 2 cut(s) 7, 375
PscI ACATGT 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 203, 453
SatI GCNGC 2 cut(s) 6, 374
Sau3AI GATC 4 cut(s) 9, 75, 108, 190
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 513
SetI ASST 6 cut(s) 178, 230, 238, 260, 335, 421
SfaNI GCATC 1 cut(s) 340
Sse9I AATT 2 cut(s) 478, 527
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 201, 461
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 478, 527
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 203, 453
Tru9I TTAA 2 cut(s) 203, 453
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 5, 373
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 222
XceI RCATGY 1 cut(s) 519
XmaJI CCTAGG 1 cut(s) 377
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.