Rh6BG247600

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000144
Physical Location & Seq
Forward (+)
45913836 .. 45914791
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG247600.1

Sequence Viewer

Length: 723 bp
ATGAAATCTATTCTCGATCAAACGAAAATGCTCTTAACTGTGATTAAGACTCTATTTTTGGCTCACAAGAATGTGGGAGACTACCTCGTGCTAACCATATCTGGTTTCCTCAAGAGCCTTCAAACTTATCGCTATCAGAGACTAGACAACAAGAAAAAGCAAAATGACTCGGATCATTGGCAGGAACCACCTGAAGATATCAAAGAGATGATTGTTCAGCACATGAGTTTCAGTGGTCGAGTTCGTTTAAGCAGTTTGTGCAAGTCTTGGAGGTTGGTTTCTATGCGAAGAGATATCCGTGCTCCTAGACAACTCCCATGGTTAGTACACCCTCAACTACCAAACTGTCATACCTACTTGAGATTCTCAAGCCTCTCTGAGGGCAAAGTTTTCAAGCTGAGGCTGCCTAAGCCGATTTTCATGAAATCGAGGCTGGCCAGGCTAGTTCCGAGATGTTTCCATCTGCAATGCCCAGACATCTCAGAATGTATGGTGGCAGCAGTTCATAATAGTGGCGAACTGGCTTTGTGTAGACCTAGAGACAAAAGCTGGAGTGTCTACCAAGTATTTGAAGAAAATGAAAATCTTGTCGAGAGAGTCAACAGAATATTGTTTTCCAGCACTGGCGTGCTATATGCCTTGGTTACAGGTTCGGAGGACCGCACTTTAAAGTTCGGAGATGAGGCAGTGAAATTGAAGCTGATCTATGACATAGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

240

Amino Acids

28.01

Weight (kDa)

9.45

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 532, 558
AciI CCGC 1 cut(s) 661
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 4 cut(s) 122, 394, 572, 697
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 626
AluBI AGCT 3 cut(s) 397, 549, 700
AluI AGCT 3 cut(s) 397, 549, 700
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 72, 133, 534
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 403, 497
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
AspS9I GGNCC 1 cut(s) 658
AvaII GGWCC 1 cut(s) 658
BalI TGGCCA 1 cut(s) 437
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 390, 509
BccI CCATC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 72, 133, 534
BfaI CTAG 4 cut(s) 143, 306, 443, 537
BisI GCNGC 2 cut(s) 404, 498
BlsI GCNGC 2 cut(s) 405, 499
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 1 cut(s) 571
Bpu10I CCTNAGC 2 cut(s) 398, 408
BpuEI CTTGAG 3 cut(s) 95, 352, 379
BsaJI CCNNGG 2 cut(s) 317, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 525, 628
Bse3DI GCAATG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 317, 639
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 3 cut(s) 369, 389, 495
BseNI ACTGG 2 cut(s) 525, 628
BseXI GCAGC 2 cut(s) 390, 509
BshFI GGCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 3 cut(s) 72, 133, 534
BsnI GGCC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 16, 172, 702
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 1 cut(s) 661
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 3 cut(s) 370, 390, 494
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 2 cut(s) 525, 628
BssECI CCNNGG 2 cut(s) 317, 639
BssMI GATC 3 cut(s) 16, 172, 702
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 2 cut(s) 317, 639
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 40, 347
Bst6I CTCTTC 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 435, 629
BstDEI CTNAG 4 cut(s) 378, 398, 408, 481
BstDSI CCRYGG 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 377
BstKTI GATC 3 cut(s) 19, 175, 705
BstMAI GTCTC 3 cut(s) 72, 133, 534
BstMBI GATC 3 cut(s) 16, 172, 702
BstMWI GCNNNNNNNGC 4 cut(s) 258, 403, 409, 439
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 390, 509
BsuRI GGCC 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 317
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 238, 621, 693
Cac8I GCNNGC 2 cut(s) 435, 629
CciI TCATGA 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 1 cut(s) 326
CviAII CATG 3 cut(s) 223, 318, 421
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 4 cut(s) 378, 398, 408, 481
DpnI GATC 3 cut(s) 18, 174, 704
DpnII GATC 3 cut(s) 16, 172, 702
DraI TTTAAA 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 317, 639
Eco32I GATATC 2 cut(s) 199, 295
Eco47I GGWCC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 437
EcoRV GATATC 2 cut(s) 199, 295
EcoT14I CCWWGG 2 cut(s) 317, 639
ErhI CCWWGG 2 cut(s) 317, 639
FaeI CATG 3 cut(s) 226, 321, 424
FatI CATG 3 cut(s) 222, 317, 420
FblI GTMKAC 2 cut(s) 532, 558
Fnu4HI GCNGC 2 cut(s) 404, 498
Fsp4HI GCNGC 2 cut(s) 404, 498
FspBI CTAG 4 cut(s) 143, 306, 443, 537
GluI GCNGC 2 cut(s) 404, 498
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 1 cut(s) 437
Hin1II CATG 3 cut(s) 226, 321, 424
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 4 cut(s) 49, 167, 363, 597
Hpy166II GTNNAC 4 cut(s) 328, 533, 559, 601
Hpy188I TCNGA 7 cut(s) 138, 172, 379, 450, 484, 655, 677
Hpy188III TCNNGA 4 cut(s) 14, 112, 421, 592
Hpy8I GTNNAC 4 cut(s) 328, 533, 559, 601
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 40, 347
HpyCH4V TGCA 2 cut(s) 261, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 258, 403, 409, 439
HpyF3I CTNAG 4 cut(s) 378, 398, 408, 481
Hsp92II CATG 3 cut(s) 226, 321, 424
Kzo9I GATC 3 cut(s) 16, 172, 702
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 390, 509
MaeI CTAG 4 cut(s) 143, 306, 443, 537
MaeIII GTNAC 1 cut(s) 643
MalI GATC 3 cut(s) 18, 174, 704
MboI GATC 3 cut(s) 16, 172, 702
MboII GAAGA 3 cut(s) 206, 300, 584
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 1 cut(s) 692
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 3 cut(s) 43, 161, 606
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
MseI TTAA 4 cut(s) 35, 45, 248, 668
MslI CAYNNNNRTG 3 cut(s) 69, 510, 626
Msp20I TGGCCA 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 4 cut(s) 258, 403, 409, 439
NcoI CCATGG 1 cut(s) 317
NdeII GATC 3 cut(s) 16, 172, 702
NlaIII CATG 3 cut(s) 226, 321, 424
NlaIV GGNNCC 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 626
PagI TCATGA 1 cut(s) 420
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 405, 499
PleI GAGTC 3 cut(s) 43, 161, 605
PpsI GAGTC 3 cut(s) 43, 161, 605
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 658
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 3 cut(s) 69, 510, 626
SaqAI TTAA 4 cut(s) 35, 45, 248, 668
SatI GCNGC 2 cut(s) 404, 498
Sau3AI GATC 3 cut(s) 16, 172, 702
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 3 cut(s) 43, 161, 606
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 304
SetI ASST 9 cut(s) 87, 193, 275, 356, 399, 538, 551, 652, 702
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 3 cut(s) 69, 510, 626
SmlI CTYRAG 3 cut(s) 110, 358, 367
SmoI CTYRAG 3 cut(s) 110, 358, 367
Sse9I AATT 1 cut(s) 692
SsiI CCGC 1 cut(s) 661
SspI AATATT 1 cut(s) 609
SspMI CTAG 4 cut(s) 143, 306, 443, 537
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 2 cut(s) 317, 639
TaaI ACNGT 2 cut(s) 40, 347
TaqI TCGA 4 cut(s) 15, 238, 428, 591
TasI AATT 1 cut(s) 692
TatI WGTACW 1 cut(s) 325
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 4 cut(s) 35, 45, 248, 668
Tru9I TTAA 4 cut(s) 35, 45, 248, 668
TscAI CASTG 3 cut(s) 238, 628, 693
TseI GCWGC 2 cut(s) 403, 497
TspDTI ATGAA 5 cut(s) 17, 409, 437, 494, 594
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 238, 628, 693
VpaK11BI GGWCC 1 cut(s) 658
XagI CCTNNNNNAGG 1 cut(s) 377
XmiI GTMKAC 2 cut(s) 532, 558
XspI CTAG 4 cut(s) 143, 306, 443, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.