Rh7AG202900

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000144
Physical Location & Seq
Reverse (-)
18493653 .. 18494366
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG202900.1

Sequence Viewer

Length: 714 bp
ATGTATGTGGGTGAGGAAGATGATCTAATTCACATCTGCATTATCATCCACATCATCAGCATTCTGTTATGGCAGATCGGCCTTATGATTGAACTCAATTCTTTTACTGTTGCTGATGCCCTTGTATGCTTATTCATTTTCGTTGGTGCTTTCCTCGTTTCCTTTTTTCTTGGTGGTGTTTTCGTCGCCGGTAATAAGGATGATGAGGGTGGTGATGAAGGAAACAACAACAATGAACAATTAAAAGGAGATGACGACGATGAAGCGGACGGTGCACCAGTAGGTGACGACGACAATGAGGATGGTGAGAGTGATGAGGAAGTTGACGTCAGCGACGAAGAAGATGAGGGCGGTGTGGAAGGTGATAGAGATCTAGGTTACGAAGGACAGAATGTGTACTTTAGAACAAGTGGATTTAGGGTATACAAGATTGGCTCGGGCAACAACTTTGATAGGGTACAAAGTTTGGGGGATCAAATATTATTATTGGCAGACCAAGGTTCTTCCTTGTGCCTCTCAGCAAGTGACTTCAAAGGCTTAGATGGGAATTGCATTTATTTTGCGTCAAACGGAATGCGTAGGCTACATCCTTTGGAAACACTCAAACCAAATATGAATTATGATCTCAGTGTCTTCTGCTTAGATGATGAAAAAATTGAGCCATTTTTTCCAGGTTTTGACATGCAAATGCGTTTCTTCATTCCATGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

4.05

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 134 - 196 6.9e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 712
AatII GACGTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 423
AciI CCGC 2 cut(s) 266, 351
AclWI GGATC 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 398, 459
AgsI TTSAA 2 cut(s) 92, 532
AjnI CCWGG 1 cut(s) 670
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 1 cut(s) 79
ApaLI GTGCAC 1 cut(s) 273
AsuHPI GGTGA 5 cut(s) 23, 224, 296, 317, 374
AvaI CYCGRG 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 277
BccI CCATC 2 cut(s) 296, 536
BciT130I CCWGG 1 cut(s) 672
BfaI CTAG 1 cut(s) 374
BglII AGATCT 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 672
BmeT110I CYCGRG 1 cut(s) 436
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 496
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 4 cut(s) 45, 205, 307, 586
BseJI GATNNNNATC 1 cut(s) 369
BseMII CTCAG 2 cut(s) 531, 640
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 277
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 1 cut(s) 189
BsmI GAATGC 2 cut(s) 60, 579
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 5 cut(s) 22, 75, 370, 472, 622
BspACI CCGC 2 cut(s) 266, 351
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 530, 639
BspPI GGATC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 5 cut(s) 22, 75, 370, 472, 622
BssNAI GTATAC 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 109, 272
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 4 cut(s) 517, 538, 626, 640
BstF5I GGATG 4 cut(s) 45, 205, 307, 586
BstKTI GATC 5 cut(s) 25, 78, 373, 475, 625
BstMBI GATC 5 cut(s) 22, 75, 370, 472, 622
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 424
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 4 cut(s) 45, 205, 307, 586
BtsIMutI CAGTG 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 188
CseI GACGC 1 cut(s) 552
Csp6I GTAC 2 cut(s) 397, 458
CviAII CATG 2 cut(s) 682, 705
CviJI RGCY 5 cut(s) 81, 435, 537, 583, 661
CviKI_1 RGCY 5 cut(s) 81, 435, 537, 583, 661
CviQI GTAC 2 cut(s) 397, 458
DdeI CTNAG 4 cut(s) 517, 538, 626, 640
DpnI GATC 5 cut(s) 24, 77, 372, 474, 624
DpnII GATC 5 cut(s) 22, 75, 370, 472, 622
Eco130I CCWWGG 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 685, 708
FatI CATG 2 cut(s) 681, 704
FblI GTMKAC 1 cut(s) 423
FokI GGATG 4 cut(s) 32, 212, 314, 573
FspBI CTAG 1 cut(s) 374
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 685, 708
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HpaII CCGG 1 cut(s) 189
HphI GGTGA 5 cut(s) 23, 224, 296, 317, 374
Hpy166II GTNNAC 4 cut(s) 275, 325, 397, 424
Hpy8I GTNNAC 4 cut(s) 275, 325, 397, 424
Hpy99I CGWCG 4 cut(s) 188, 260, 293, 338
HpyAV CCTTC 3 cut(s) 212, 353, 377
HpyCH4III ACNGT 2 cut(s) 109, 272
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 39, 275, 552, 685
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 517, 538, 626, 640
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 685, 708
Kzo9I GATC 5 cut(s) 22, 75, 370, 472, 622
LpnPI CCDG 4 cut(s) 202, 291, 657, 684
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 284, 377, 524
MalI GATC 5 cut(s) 24, 77, 372, 474, 624
MboI GATC 5 cut(s) 22, 75, 370, 472, 622
MboII GAAGA 6 cut(s) 29, 350, 353, 495, 625, 688
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 6 cut(s) 27, 97, 239, 547, 616, 654
MnlI CCTC 7 cut(s) 7, 164, 199, 292, 310, 340, 524
MseI TTAA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 60, 579
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 5 cut(s) 22, 75, 370, 472, 622
NlaIII CATG 2 cut(s) 685, 708
NmuCI GTSAC 2 cut(s) 284, 524
NspI RCATGY 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 2 cut(s) 60, 579
PsiI TTATAA 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 398, 459
RsaNI GTAC 2 cut(s) 397, 458
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 1 cut(s) 242
Sau3AI GATC 5 cut(s) 22, 75, 370, 472, 622
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 1 cut(s) 277
SetI ASST 6 cut(s) 286, 330, 364, 379, 502, 676
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 686
Sse9I AATT 6 cut(s) 27, 97, 239, 547, 616, 654
SsiI CCGC 2 cut(s) 266, 351
SspI AATATT 1 cut(s) 480
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 670
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 2 cut(s) 109, 272
TaiI ACGT 1 cut(s) 330
TasI AATT 6 cut(s) 27, 97, 239, 547, 616, 654
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 2 cut(s) 284, 524
Tsp45I GTSAC 2 cut(s) 284, 524
TspDTI ATGAA 7 cut(s) 124, 231, 249, 276, 629, 663, 688
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 1 cut(s) 634
VneI GTGCAC 1 cut(s) 273
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 1 cut(s) 374
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.