Rh3CG220300

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000144
Physical Location & Seq
Reverse (-)
20560666 .. 20560959
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG220300.1

Sequence Viewer

Length: 294 bp
ATGGACGGTGAGACTGAAAACTTCCATGAGGTACAACACTTGGGAGAACAAATAATACTCTTATCAGATTTCGGATCCTCGTCGCGCGCCTCAGCTGCATTGAAAGGGAATCGCATTTGTTTTGCAACACATGCTTTTAACAATCAGCAATCAAACCTTGCTATGGGTATATTCTACCTAAGCAGTGGAAGAATTAAGCAAAATATTCATTTTGTCGACAGATCAGTATTGCTACGGCTGGGCAGTTCAGTTGCTAATGACCGAGGGACTTGTTGGTTTACTCCAAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

97

Amino Acids

10.73

Weight (kDa)

6.89

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 85, 87
AclWI GGATC 2 cut(s) 69, 82
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 69, 82
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 87, 89
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 5
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 76
Bpu10I CCTNAGC 2 cut(s) 91, 179
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 105
BsePI GCGCGC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 85, 87
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 74, 221
BspCNI CTCAG 1 cut(s) 104
BspFNI CGCG 2 cut(s) 85, 87
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 2 cut(s) 69, 82
BssECI CCNNGG 1 cut(s) 262
BssHII GCGCGC 1 cut(s) 85
BssMI GATC 2 cut(s) 74, 221
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 91, 179
BstFNI CGCG 2 cut(s) 85, 87
BstHHI GCGC 2 cut(s) 87, 89
BstKTI GATC 2 cut(s) 77, 224
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 74, 221
BstMWI GCNNNNNNNGC 2 cut(s) 95, 131
BstNSI RCATGY 1 cut(s) 134
BstUI CGCG 2 cut(s) 85, 87
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 87, 89
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 26, 131
CviJI RGCY 2 cut(s) 95, 238
CviKI_1 RGCY 2 cut(s) 95, 238
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 91, 179
DpnI GATC 2 cut(s) 76, 223
DpnII GATC 2 cut(s) 74, 221
FaeI CATG 2 cut(s) 29, 134
FaiI YATR 5 cut(s) 27, 132, 164, 170, 292
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 25, 130
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 2 cut(s) 86, 88
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 87, 89
Hin1II CATG 2 cut(s) 29, 134
Hin6I GCGC 2 cut(s) 85, 87
HinP1I GCGC 2 cut(s) 85, 87
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 217, 279
Hpy188I TCNGA 2 cut(s) 67, 74
Hpy8I GTNNAC 2 cut(s) 217, 279
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 98, 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 131
HpyF3I CTNAG 2 cut(s) 91, 179
Hsp92II CATG 2 cut(s) 29, 134
HspAI GCGC 2 cut(s) 85, 87
Kzo9I GATC 2 cut(s) 74, 221
LpnPI CCDG 1 cut(s) 224
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 2 cut(s) 76, 223
MboI GATC 2 cut(s) 74, 221
MboII GAAGA 1 cut(s) 201
MflI RGATCY 1 cut(s) 74
MluCI AATT 1 cut(s) 192
MnlI CCTC 4 cut(s) 22, 88, 100, 257
MseI TTAA 2 cut(s) 138, 195
MspA1I CMGCKG 1 cut(s) 95
MvnI CGCG 2 cut(s) 85, 87
MwoI GCNNNNNNNGC 2 cut(s) 95, 131
NdeII GATC 2 cut(s) 74, 221
NlaIII CATG 2 cut(s) 29, 134
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 134
PauI GCGCGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 76
PsrI GAACNNNNNNTAC 2 cut(s) 39, 71
PsuI RGATCY 1 cut(s) 74
PteI GCGCGC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 138, 195
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 74, 221
SetI ASST 4 cut(s) 33, 97, 159, 180
Sse9I AATT 1 cut(s) 192
SspI AATATT 1 cut(s) 205
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 276
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 138, 195
Tru9I TTAA 2 cut(s) 138, 195
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 190
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.