Rorug03G0315100

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000144
Physical Location & Seq
Reverse (-)
33923631 .. 33946227
22597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0315100.1

Sequence Viewer

Length: 1518 bp
ATGGGTGGCCAAAGTAGTGGAAGCTCTGCATGTTCCGAGGAGTCTTTTGTGAAGATGGCAACGATAAAGTTCATCAAGCTCTTCATCAACGGAGAATTCATCGATTCCGTTTCAGGAAAAACATTCGAGACCATAGATCCAAGAACAGGGGAGGTGATAACCAGAGTGGCAGAAGGAGATAAGGAAGACGTGGATTTGGCCGTGAAAGCTGCACGCGCCGCCTTTGACCATGGCCCCTGCCCTCGCTTACCCGGCGCTGAGAGGGGAGCGATTATGTTGAAGTTCGCAGACTTGATTGATGAACACACCGAAGAACTAGCCAAGTTGGATACAGTTGATGCTGGGAAGTTGTTCAGTTTTGGCAAAGCCGTAGACATACCTCAGGTAGCACAAACTCTACGTTACTATGCTGGTGCAGCTGATAAAATTCACGGAGAGGTGCTCAAAATGTCGCGCGAGCTTCAAGCTTATACATTACTTGAACCCGTTGGAGTTGTCGGACACATCATTCCATGGAATTTTCCCAGCACCCTGTTATTTGCTAAGATTGCTCCTTCCTTGGCAGCTGGTTGCACAATGGTTGTCAAACCTGCTGAGCAATCACCTCTTTCAGCTCTGTATTATGCTCATCTAGCTAAGTTGGCTGGTGTTCCTGATGGAGTGCTCAATGTCATCACTGGGTATGGAGAGACTGCTGGTGCTGCCATCACCTATCATATGGACATTGACAAAGTCAGTTTTACTGGTTCCTCTGAGGTTGGCCGTGAAGTAATGCAGGCTGCAGCAAAGAGTAATTTAAAAGAAGTTTCACTTGAACTAGGGGGCAAGTCACCCCTATTGATTTTTGATGATGATGATGTAGACATGGCTGCTGACCTTGCTCTCCTGGGGATTCTCTTCAACAAAGGAGAAATTTGCGTGGCAAGTTCCCGTGTTTTTGTTCAAGAAGGGATTTATGATGAACTTGTCAAGAAGTTGACAGAGAAGGCAAAAGATTGGGTTGTTGGAGATCCTTTTGATCCTAATGTTCGTCAAGGACCCCAGGTAGATAAAACGCAGTATGAGAAAATCTTGACCTACATTGAGCATGGCAAAAGACAAGGAGCAACTTTGTTAACAGGGGGCAAGCCTGTGGGGAAGAAGGGTTATTTCATTGAGCCAACAATATTCACTGATGTCAAGGATGACATGCTTATAGCCACGGATGAAATATTCGGACCTGTCATGTCACTAATGAAGTTCAAGACAATTGAGGAGGGAATAGAGAGAGCCAACAAAATCAAATATGGCCTAGCAGCCGGCATTGTAACCAAGAACATCGATGTGGCCAACACCGTCTCAAGATCTATCCGCGCGGGCACTATATGGATCAACTGCTACTTTGCCTTCGGAAACGATGTCCCTTTTGGAGGATACAAGATGAGTGGCTTTGGAAAAGACTATGGTATGCAAGGCCTCCACAAGTATCTGCATACTAAATCTGTGGTCACTCCCATTTATAACTCTCCCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

505

Amino Acids

54.75

Weight (kDa)

5.53

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 34 - 495 1.8e-171 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1500
Acc36I ACCTGC 1 cut(s) 598
AccI GTMKAC 2 cut(s) 372, 861
AccII CGCG 5 cut(s) 216, 454, 456, 1353, 1355
AciI CCGC 3 cut(s) 219, 1351, 1355
AclWI GGATC 4 cut(s) 131, 1004, 1013, 1376
AcoI YGGCCR 4 cut(s) 7, 198, 760, 1326
AcsI RAATTY 4 cut(s) 95, 426, 517, 912
AfiI CCNNNNNNNGG 2 cut(s) 146, 1409
AgsI TTSAA 7 cut(s) 280, 464, 482, 815, 901, 944, 1243
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 3 cut(s) 885, 1041, 1508
AluBI AGCT 9 cut(s) 24, 79, 209, 419, 460, 467, 566, 614, 635
AluI AGCT 9 cut(s) 24, 79, 209, 419, 460, 467, 566, 614, 635
Alw21I GWGCWC 2 cut(s) 444, 666
Alw26I GTCTC 3 cut(s) 122, 683, 1342
AlwI GGATC 4 cut(s) 131, 1004, 1013, 1376
AoxI GGCC 7 cut(s) 7, 198, 232, 760, 1288, 1326, 1453
ApeKI GCWGC 8 cut(s) 209, 416, 563, 701, 779, 782, 869, 1295
ApoI RAATTY 4 cut(s) 95, 426, 517, 912
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 4 cut(s) 218, 257, 456, 1355
AspS9I GGNCC 3 cut(s) 233, 1037, 1217
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 166, 594, 700, 822
AvaII GGWCC 2 cut(s) 1037, 1217
AxyI CCTNAGG 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 1361
BalI TGGCCA 2 cut(s) 9, 1328
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 444, 666
BbvI GCAGC 8 cut(s) 196, 428, 575, 688, 766, 794, 856, 1307
BccI CCATC 3 cut(s) 49, 650, 713
BceAI ACGGC 3 cut(s) 185, 353, 747
BciT130I CCWGG 3 cut(s) 887, 1043, 1510
BciVI GTATCC 2 cut(s) 322, 1406
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 122, 683, 1342
BfaI CTAG 4 cut(s) 317, 632, 818, 1292
BfmI CTRYAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 598
BfuI GTATCC 2 cut(s) 322, 1406
BglII AGATCT 1 cut(s) 1343
BisI GCNGC 9 cut(s) 210, 219, 417, 564, 702, 780, 783, 870, 1296
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 9 cut(s) 211, 220, 418, 565, 703, 781, 784, 871, 1297
Bme1390I CCNGG 4 cut(s) 252, 887, 1043, 1510
Bme18I GGWCC 2 cut(s) 1037, 1217
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 233, 1037, 1217
BmiI GGNNCC 3 cut(s) 235, 748, 1039
BmrFI CCNGG 4 cut(s) 252, 887, 1043, 1510
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 426, 458
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 1324
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 2 cut(s) 102, 1320
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 8 cut(s) 36, 229, 512, 558, 886, 1041, 1200, 1508
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1409
Bse118I RCCGGY 1 cut(s) 1298
Bse1I ACTGG 2 cut(s) 682, 748
Bse21I CCTNAGG 1 cut(s) 381
BseBI CCWGG 3 cut(s) 887, 1043, 1510
BseCI ATCGAT 2 cut(s) 102, 1320
BseDI CCNNGG 8 cut(s) 36, 229, 512, 558, 886, 1041, 1200, 1508
BseGI GGATG 2 cut(s) 1189, 1210
BseLI CCNNNNNNNGG 2 cut(s) 146, 1409
BseMII CTCAG 4 cut(s) 249, 395, 585, 744
BseNI ACTGG 2 cut(s) 682, 748
BseRI GAGGAG 2 cut(s) 53, 1268
BseSI GKGCMC 1 cut(s) 1361
BseXI GCAGC 8 cut(s) 196, 428, 575, 688, 766, 794, 856, 1307
BseYI CCCAGC 2 cut(s) 341, 524
BsgI GTGCAG 2 cut(s) 195, 435
Bsh1236I CGCG 5 cut(s) 216, 454, 456, 1353, 1355
BshFI GGCC 7 cut(s) 9, 200, 234, 762, 1290, 1328, 1455
BshVI ATCGAT 2 cut(s) 102, 1320
BsiHKAI GWGCWC 2 cut(s) 444, 666
BsiSI CCGG 2 cut(s) 252, 1299
BslFI GGGAC 1 cut(s) 1385
BslI CCNNNNNNNGG 2 cut(s) 146, 1409
BsmAI GTCTC 3 cut(s) 122, 683, 1342
BsmBI CGTCTC 1 cut(s) 1342
BsmFI GGGAC 1 cut(s) 1385
BsnI GGCC 7 cut(s) 9, 200, 234, 762, 1290, 1328, 1455
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 444, 666, 1361
Bsp143I GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
Bsp1720I GCTNAGC 1 cut(s) 594
Bsp19I CCATGG 2 cut(s) 229, 512
BspACI CCGC 3 cut(s) 219, 1351, 1355
BspANI GGCC 7 cut(s) 9, 200, 234, 762, 1290, 1328, 1455
BspCNI CTCAG 4 cut(s) 250, 394, 586, 745
BspDI ATCGAT 2 cut(s) 102, 1320
BspFNI CGCG 5 cut(s) 216, 454, 456, 1353, 1355
BspLI GGNNCC 3 cut(s) 235, 748, 1039
BspMAI CTGCAG 1 cut(s) 784
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 4 cut(s) 131, 1004, 1013, 1376
BspQI GCTCTTC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 1298
BsrI ACTGG 2 cut(s) 682, 748
BssAI RCCGGY 1 cut(s) 1298
BssECI CCNNGG 8 cut(s) 36, 229, 512, 558, 886, 1041, 1200, 1508
BssMI GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
BssT1I CCWWGG 3 cut(s) 229, 512, 558
Bst2UI CCWGG 3 cut(s) 887, 1043, 1510
Bst4CI ACNGT 2 cut(s) 334, 1336
Bst6I CTCTTC 2 cut(s) 86, 902
BstC8I GCNNGC 6 cut(s) 214, 458, 777, 1127, 1300, 1357
BstDEI CTNAG 6 cut(s) 258, 381, 543, 594, 636, 753
BstDSI CCRYGG 3 cut(s) 229, 512, 1200
BstENI CCTNNNNNAGG 1 cut(s) 1407
BstF5I GGATG 2 cut(s) 1189, 1210
BstFNI CGCG 5 cut(s) 216, 454, 456, 1353, 1355
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 4 cut(s) 218, 257, 456, 1355
BstKTI GATC 5 cut(s) 139, 1012, 1021, 1346, 1371
BstMAI GTCTC 3 cut(s) 122, 683, 1342
BstMBI GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
BstNI CCWGG 3 cut(s) 887, 1043, 1510
BstNSI RCATGY 2 cut(s) 33, 1192
BstSCI CCNGG 4 cut(s) 250, 885, 1041, 1508
BstSFI CTRYAG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 1361
BstUI CGCG 5 cut(s) 216, 454, 456, 1353, 1355
BstV1I GCAGC 8 cut(s) 196, 428, 575, 688, 766, 794, 856, 1307
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 3 cut(s) 136, 1009, 1343
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 3 cut(s) 136, 1009, 1343
Bsu15I ATCGAT 2 cut(s) 102, 1320
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 2 cut(s) 322, 1406
BsuRI GGCC 7 cut(s) 9, 200, 234, 762, 1290, 1328, 1455
BsuTUI ATCGAT 2 cut(s) 102, 1320
BtgI CCRYGG 3 cut(s) 229, 512, 1200
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 1189, 1210
BtsIMutI CAGTG 2 cut(s) 675, 1170
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 6 cut(s) 214, 458, 777, 1127, 1300, 1357
CfoI GCGC 4 cut(s) 218, 257, 456, 1355
Cfr10I RCCGGY 1 cut(s) 1298
Cfr13I GGNCC 3 cut(s) 233, 1037, 1217
ClaI ATCGAT 2 cut(s) 102, 1320
CspCI CAANNNNNGTGG 2 cut(s) 1405, 1440
CviAII CATG 7 cut(s) 30, 230, 513, 865, 1088, 1189, 1225
DdeI CTNAG 6 cut(s) 258, 381, 543, 594, 636, 753
DpnI GATC 5 cut(s) 138, 1011, 1020, 1345, 1370
DpnII GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
DraI TTTAAA 1 cut(s) 798
EaeI YGGCCR 4 cut(s) 7, 198, 760, 1326
Eam1104I CTCTTC 2 cut(s) 86, 902
EarI CTCTTC 2 cut(s) 86, 902
Eco130I CCWWGG 3 cut(s) 229, 512, 558
Eco147I AGGCCT 1 cut(s) 1455
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 1037, 1217
Eco81I CCTNAGG 1 cut(s) 381
EcoNI CCTNNNNNAGG 1 cut(s) 1407
EcoO109I RGGNCCY 1 cut(s) 1037
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 3 cut(s) 885, 1041, 1508
EcoT14I CCWWGG 3 cut(s) 229, 512, 558
ErhI CCWWGG 3 cut(s) 229, 512, 558
Esp3I CGTCTC 1 cut(s) 1342
FaeI CATG 7 cut(s) 33, 233, 516, 868, 1091, 1192, 1228
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 1 cut(s) 1385
FatI CATG 7 cut(s) 29, 229, 512, 864, 1087, 1188, 1224
FauI CCCGC 1 cut(s) 1348
FauNDI CATATG 1 cut(s) 717
FblI GTMKAC 2 cut(s) 372, 861
Fnu4HI GCNGC 9 cut(s) 210, 219, 417, 564, 702, 780, 783, 870, 1296
FokI GGATG 2 cut(s) 1196, 1217
Fsp4HI GCNGC 9 cut(s) 210, 219, 417, 564, 702, 780, 783, 870, 1296
FspBI CTAG 4 cut(s) 317, 632, 818, 1292
GlaI GCGC 4 cut(s) 217, 256, 455, 1354
GluI GCNGC 9 cut(s) 210, 219, 417, 564, 702, 780, 783, 870, 1296
GsaI CCCAGC 2 cut(s) 345, 528
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 7 cut(s) 9, 200, 234, 762, 1290, 1328, 1455
HapII CCGG 2 cut(s) 252, 1299
HhaI GCGC 4 cut(s) 218, 257, 456, 1355
Hin1II CATG 7 cut(s) 33, 233, 516, 868, 1091, 1192, 1228
Hin6I GCGC 4 cut(s) 216, 255, 454, 1353
HinP1I GCGC 4 cut(s) 216, 255, 454, 1353
HincII GTYRAC 2 cut(s) 978, 1116
HindII GTYRAC 2 cut(s) 978, 1116
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 3 cut(s) 41, 104, 892
HpaI GTTAAC 1 cut(s) 1116
HpaII CCGG 2 cut(s) 252, 1299
HphI GGTGA 4 cut(s) 166, 594, 700, 822
Hpy166II GTNNAC 4 cut(s) 373, 862, 978, 1116
Hpy188I TCNGA 6 cut(s) 37, 500, 754, 1217, 1391, 1517
Hpy188III TCNNGA 8 cut(s) 114, 127, 653, 944, 970, 1072, 1243, 1341
Hpy8I GTNNAC 4 cut(s) 373, 862, 978, 1116
HpyAV CCTTC 6 cut(s) 167, 564, 941, 979, 1135, 1396
HpyCH4III ACNGT 2 cut(s) 334, 1336
HpyCH4IV ACGT 2 cut(s) 189, 400
HpyCH4V TGCA 8 cut(s) 29, 212, 416, 573, 775, 782, 1450, 1471
HpyF3I CTNAG 6 cut(s) 258, 381, 543, 594, 636, 753
HpySE526I ACGT 2 cut(s) 189, 400
Hsp92II CATG 7 cut(s) 33, 233, 516, 868, 1091, 1192, 1228
HspAI GCGC 4 cut(s) 216, 255, 454, 1353
KroI GCCGGC 1 cut(s) 1298
KroNI GCCGGC 1 cut(s) 1300
KspAI GTTAAC 1 cut(s) 1116
Kzo9I GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 3 cut(s) 266, 556, 1103
Lsp1109I GCAGC 8 cut(s) 196, 428, 575, 688, 766, 794, 856, 1307
LweI GCATC 1 cut(s) 328
MaeI CTAG 4 cut(s) 317, 632, 818, 1292
MaeII ACGT 2 cut(s) 189, 400
MaeIII GTNAC 5 cut(s) 401, 828, 1227, 1306, 1486
MalI GATC 5 cut(s) 138, 1011, 1020, 1345, 1370
MboI GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
MboII GAAGA 6 cut(s) 64, 73, 197, 323, 889, 1150
MfeI CAATTG 1 cut(s) 1248
MflI RGATCY 3 cut(s) 136, 1009, 1343
MhlI GDGCHC 3 cut(s) 444, 666, 1361
MlsI TGGCCA 2 cut(s) 9, 1328
MluCI AATT 6 cut(s) 95, 426, 517, 793, 912, 1248
MluNI TGGCCA 2 cut(s) 9, 1328
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 4 cut(s) 306, 469, 478, 985
Mox20I TGGCCA 2 cut(s) 9, 1328
MroNI GCCGGC 1 cut(s) 1298
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 2 cut(s) 9, 1328
MseI TTAA 2 cut(s) 797, 1115
MslI CAYNNNNRTG 1 cut(s) 1322
Msp20I TGGCCA 2 cut(s) 9, 1328
MspA1I CMGCKG 2 cut(s) 419, 566
MspI CCGG 2 cut(s) 252, 1299
MspR9I CCNGG 4 cut(s) 252, 887, 1043, 1510
MunI CAATTG 1 cut(s) 1248
MvaI CCWGG 3 cut(s) 887, 1043, 1510
MvnI CGCG 5 cut(s) 216, 454, 456, 1353, 1355
NaeI GCCGGC 1 cut(s) 1300
NciI CCSGG 1 cut(s) 252
NcoI CCATGG 2 cut(s) 229, 512
NdeI CATATG 1 cut(s) 717
NdeII GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
NgoMIV GCCGGC 1 cut(s) 1298
NlaIII CATG 7 cut(s) 33, 233, 516, 868, 1091, 1192, 1228
NlaIV GGNNCC 3 cut(s) 235, 748, 1039
NmuCI GTSAC 3 cut(s) 828, 1227, 1486
NspI RCATGY 2 cut(s) 33, 1192
PceI AGGCCT 1 cut(s) 1455
PciSI GCTCTTC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 1300
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 104, 892
PflFI GACNNNGTC 1 cut(s) 731
PkrI GCNGC 9 cut(s) 211, 220, 418, 565, 703, 781, 784, 871, 1297
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 1037
PsiI TTATAA 1 cut(s) 1500
Psp5II RGGWCCY 1 cut(s) 1037
Psp6I CCWGG 3 cut(s) 885, 1041, 1508
PspFI CCCAGC 2 cut(s) 341, 524
PspGI CCWGG 3 cut(s) 885, 1041, 1508
PspN4I GGNNCC 3 cut(s) 235, 748, 1039
PspPI GGNCC 3 cut(s) 233, 1037, 1217
PspPPI RGGWCCY 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 784
PsuI RGATCY 3 cut(s) 136, 1009, 1343
PsyI GACNNNGTC 1 cut(s) 731
PvuII CAGCTG 2 cut(s) 419, 566
RseI CAYNNNNRTG 1 cut(s) 1322
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 797, 1115
SatI GCNGC 9 cut(s) 210, 219, 417, 564, 702, 780, 783, 870, 1296
Sau3AI GATC 5 cut(s) 136, 1009, 1018, 1343, 1368
Sau96I GGNCC 3 cut(s) 233, 1037, 1217
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 4 cut(s) 252, 887, 1043, 1510
SduI GDGCHC 3 cut(s) 444, 666, 1361
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 780
SinI GGWCC 2 cut(s) 1037, 1217
SmiMI CAYNNNNRTG 1 cut(s) 1322
SmlI CTYRAG 1 cut(s) 1339
SmoI CTYRAG 1 cut(s) 1339
Sse9I AATT 6 cut(s) 95, 426, 517, 793, 912, 1248
SseBI AGGCCT 1 cut(s) 1455
SsiI CCGC 3 cut(s) 219, 1351, 1355
SspI AATATT 2 cut(s) 1167, 1212
SspMI CTAG 4 cut(s) 317, 632, 818, 1292
StuI AGGCCT 1 cut(s) 1455
StyD4I CCNGG 4 cut(s) 250, 885, 1041, 1508
StyI CCWWGG 3 cut(s) 229, 512, 558
TaaI ACNGT 2 cut(s) 334, 1336
TaiI ACGT 2 cut(s) 192, 403
TaqI TCGA 3 cut(s) 102, 126, 1320
TasI AATT 6 cut(s) 95, 426, 517, 793, 912, 1248
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 104, 892
Tru1I TTAA 2 cut(s) 797, 1115
Tru9I TTAA 2 cut(s) 797, 1115
TscAI CASTG 2 cut(s) 682, 1177
TseFI GTSAC 3 cut(s) 828, 1227, 1486
TseI GCWGC 8 cut(s) 209, 416, 563, 701, 779, 782, 869, 1295
Tsp45I GTSAC 3 cut(s) 828, 1227, 1486
TspDTI ATGAA 8 cut(s) 61, 73, 88, 315, 975, 1141, 1221, 1250
TspGWI ACGGA 4 cut(s) 97, 105, 447, 1217
TspRI CASTG 2 cut(s) 682, 1177
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 2 cut(s) 1037, 1217
XagI CCTNNNNNAGG 1 cut(s) 1407
XapI RAATTY 4 cut(s) 95, 426, 517, 912
XceI RCATGY 2 cut(s) 33, 1192
XmiI GTMKAC 2 cut(s) 372, 861
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 4 cut(s) 317, 632, 818, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.