Rh7AG203000

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
18494670 .. 18495224
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG203000.1

Sequence Viewer

Length: 486 bp
ATGAGCAGCAACCCAACTCGTTTCCGGAGTTGGCAAGAGCCACAACCAGATATTATGGAGAAGATTATACAGCGTCTCGACATAACCGATCGAATACGTTTAAGATTTGTCTGTGAGTCTTGGAGGTCAGTTGCTAGGCGAAGAGACATCCGTGGTGCTCCGCAGCTCCCCTGGTTAGTACACCCTCATAACCCTAGGTCCAAGATATTTTCGAGCCTCACTAATGGTCAAGTTCACAAGTTGAGGCTCCCTCCAGGAGGGTGGTGGTTTTATGGTTCTTCTAAAGGTTGGTTGATTATGGTCAAAGGAAAAGGACTAAACGCTGAGATACTTGTACTAAACCCGATTTCTGGAGCCCAGCACAAGGTTCCATCTTTCCATGATGAGTCTGTAGTAATTGATCATGAAGCTGATTCTTTCCTCGAAAATATTGAATTATCTAGCCCAAACGAGTCCGAATGTATGGTGGCTGCGCGCAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.5

Weight (kDa)

9.38

Isoelectric Point (pI)

70.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 49 1.3e-08 F-box domain
Beta-prop_KIB1-4 PF03478 70 - 157 9.7e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 475
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 1 cut(s) 161
AfaI GTAC 2 cut(s) 180, 336
AfiI CCNNNNNNNGG 3 cut(s) 257, 350, 364
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 2 cut(s) 170, 253
AluBI AGCT 2 cut(s) 166, 410
AluI AGCT 2 cut(s) 166, 410
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 80, 138
Aor13HI TCCGGA 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 6, 163, 470
AspA2I CCTAGG 1 cut(s) 194
AspLEI GCGC 2 cut(s) 475, 477
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
AvrII CCTAGG 1 cut(s) 194
BanII GRGCYC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 18, 175, 457
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 2 cut(s) 172, 255
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 80, 138
BfaI CTAG 3 cut(s) 135, 195, 441
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 7, 164, 471
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 3 cut(s) 8, 165, 472
Bme1390I CCNGG 2 cut(s) 172, 255
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 3 cut(s) 248, 355, 369
BmrFI CCNGG 2 cut(s) 172, 255
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 2 cut(s) 237, 372
BsaJI CCNNGG 3 cut(s) 151, 170, 194
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 350, 364
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 2 cut(s) 172, 255
BseDI CCNNGG 3 cut(s) 151, 170, 194
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 257, 350, 364
BseMII CTCAG 1 cut(s) 315
BsePI GCGCGC 1 cut(s) 473
BseXI GCAGC 3 cut(s) 18, 175, 457
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 257, 350, 364
BsmAI GTCTC 2 cut(s) 80, 138
BsmBI CGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 160, 358
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 88, 400
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 316
BspEI TCCGGA 1 cut(s) 24
BspFNI CGCG 1 cut(s) 475
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 248, 355, 369
BssECI CCNNGG 3 cut(s) 151, 170, 194
BssHII GCGCGC 1 cut(s) 473
BssMI GATC 2 cut(s) 88, 400
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 172, 255
Bst6I CTCTTC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 2 cut(s) 475, 477
BstKTI GATC 2 cut(s) 91, 403
BstMAI GTCTC 2 cut(s) 80, 138
BstMBI GATC 2 cut(s) 88, 400
BstMCI CGRYCG 1 cut(s) 91
BstNI CCWGG 2 cut(s) 172, 255
BstSCI CCNGG 2 cut(s) 170, 253
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 3 cut(s) 18, 175, 457
BstXI CCANNNNNNTGG 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 475
CciI TCATGA 1 cut(s) 403
CfoI GCGC 2 cut(s) 475, 477
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 179, 335
CviAII CATG 2 cut(s) 380, 404
CviJI RGCY 8 cut(s) 40, 166, 216, 247, 356, 410, 444, 470
CviKI_1 RGCY 8 cut(s) 40, 166, 216, 247, 356, 410, 444, 470
CviQI GTAC 2 cut(s) 179, 335
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 90, 402
DpnII GATC 2 cut(s) 88, 400
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 170, 253
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 2 cut(s) 383, 407
FaiI YATR 9 cut(s) 56, 68, 83, 189, 273, 299, 381, 405, 464
FatI CATG 2 cut(s) 379, 403
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 7, 164, 471
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 3 cut(s) 7, 164, 471
FspBI CTAG 3 cut(s) 135, 195, 441
GlaI GCGC 2 cut(s) 474, 476
GluI GCNGC 3 cut(s) 7, 164, 471
GsaI CCCAGC 1 cut(s) 361
GsuI CTGGAG 2 cut(s) 237, 372
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 475, 477
Hin1II CATG 2 cut(s) 383, 407
Hin6I GCGC 2 cut(s) 473, 475
HinP1I GCGC 2 cut(s) 473, 475
HinfI GANTC 4 cut(s) 116, 386, 413, 452
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 181, 235
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 4 cut(s) 25, 77, 351, 404
Hpy8I GTNNAC 2 cut(s) 181, 235
HpyCH4IV ACGT 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 383, 407
HspAI GCGC 2 cut(s) 473, 475
Kpn2I TCCGGA 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 2 cut(s) 88, 400
LmnI GCTCC 4 cut(s) 163, 171, 252, 353
LpnPI CCDG 8 cut(s) 38, 60, 157, 184, 240, 267, 336, 371
Lsp1109I GCAGC 3 cut(s) 18, 175, 457
MaeI CTAG 3 cut(s) 135, 195, 441
MaeII ACGT 1 cut(s) 97
MalI GATC 2 cut(s) 90, 402
MboI GATC 2 cut(s) 88, 400
MboII GAAGA 3 cut(s) 73, 153, 270
MhlI GDGCHC 2 cut(s) 160, 358
MluCI AATT 2 cut(s) 396, 434
MlyI GAGTC 3 cut(s) 125, 395, 461
MnlI CCTC 7 cut(s) 117, 195, 227, 237, 251, 261, 431
MroI TCCGGA 1 cut(s) 24
MseI TTAA 2 cut(s) 101, 484
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 172, 255
MvaI CCWGG 2 cut(s) 172, 255
MvnI CGCG 1 cut(s) 475
NdeII GATC 2 cut(s) 88, 400
NlaIII CATG 2 cut(s) 383, 407
NlaIV GGNNCC 3 cut(s) 248, 355, 369
PagI TCATGA 1 cut(s) 403
PauI GCGCGC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 3 cut(s) 8, 165, 472
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 3 cut(s) 124, 394, 460
PpsI GAGTC 3 cut(s) 124, 394, 460
Psp6I CCWGG 2 cut(s) 170, 253
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 2 cut(s) 170, 253
PspN4I GGNNCC 3 cut(s) 248, 355, 369
PspPI GGNCC 1 cut(s) 198
PteI GCGCGC 1 cut(s) 473
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 2 cut(s) 180, 336
RsaNI GTAC 2 cut(s) 179, 335
SaqAI TTAA 2 cut(s) 101, 484
SatI GCNGC 3 cut(s) 7, 164, 471
Sau3AI GATC 2 cut(s) 88, 400
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 3 cut(s) 125, 395, 461
ScrFI CCNGG 2 cut(s) 172, 255
SduI GDGCHC 2 cut(s) 160, 358
SetI ASST 7 cut(s) 100, 128, 168, 200, 289, 369, 412
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 198
Sse9I AATT 2 cut(s) 396, 434
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 430
SspMI CTAG 3 cut(s) 135, 195, 441
StyD4I CCNGG 2 cut(s) 170, 253
StyI CCWWGG 1 cut(s) 194
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 78, 91, 212, 423
TasI AATT 2 cut(s) 396, 434
TatI WGTACW 2 cut(s) 178, 334
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 101, 484
Tru9I TTAA 2 cut(s) 101, 484
TseI GCWGC 3 cut(s) 6, 163, 470
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 3 cut(s) 135, 195, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.