Rh7BG202700

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000144
Physical Location & Seq
Reverse (-)
16869381 .. 16870307
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG202700.1

Sequence Viewer

Length: 927 bp
ATGGAAGATGAAAGTTTGAATTTTGGAGATAATGTAGTAGAAGTGAAGTTCGTCTTTGACAGTTTTGAAAATTTATTGAATAACCCCGAGTTTATTGTACCAGAGATTTATCCCGACTCTACGATCATGCGGAATAGTGAAGTGAACTCATATTTGTTAGAATCAGCGAACAATGAAGTTTTGTTGATCCATCAAATTTATGATCGAAAAACAATGTATGTGGGTGAGGAAGATGATCTAATTCACATCTGCATTATCATCCACATCATCAGCATTCTGTTAGGGCAGATCGGCCTTATGATTGAACTCAATTCTTTTACTGTTGCTGATGCCCTTGTATGCTTATTCATTTTCGTTGGTGCTTTCCTCGTTTCCTTTTTTCTTGGTGGTGTTTTCGTCGCCGTTAATAAGGATGATGAGGGTGGTGATGAAGGAAACAACAACAATGAACATTTAAAAGGAGATGACGACGATGAAGCGGACGGTGCACCAGTAGGTGACGACGACAATGAGGATGGTGAGAGTGATGAGGAAGTTGACGACAGCGACGAAGAAGACGAGGGCGGTGTGGAAGGTGATAGAGATCTAGGTTACGAAGGACAGAATGTGTACTTTAGAACAAGTGGTTTTAGGGTATACAAGATTGGCTCGGGCAACAACTTTGATAGGGTACAAAGTTTGGGGGATCAAATATTATTATTGGCAGACCAAGGTTCTTCCTTGTGCCTCTCAGCAAGTGACTTCGAAGGCTTAAATGGGAATTGCATTTATTTTGCGTCAAACGGAATGCGTAGGCTACATCCTTTGGAAACACTCAAACCAAATATGAATTATGATCTTAGTGTCTTCTGCTTAGATGATGAAAAAATTGAGCCATTTTTTTCAGGTTTTGACATGCAAATGCGTTTCTTCATTCCATGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

308

Amino Acids

34.42

Weight (kDa)

4.05

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 205 - 267 7.4e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 925
AccI GTMKAC 1 cut(s) 636
AciI CCGC 3 cut(s) 130, 479, 564
AclWI GGATC 2 cut(s) 181, 693
AcsI RAATTY 3 cut(s) 19, 70, 195
AfaI GTAC 3 cut(s) 99, 611, 672
AgsI TTSAA 4 cut(s) 19, 68, 79, 305
Alw21I GWGCWC 1 cut(s) 490
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 2 cut(s) 181, 693
Ama87I CYCGRG 2 cut(s) 86, 649
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 486
ApoI RAATTY 3 cut(s) 19, 70, 195
AsuHPI GGTGA 5 cut(s) 236, 437, 509, 530, 587
AsuII TTCGAA 1 cut(s) 744
AvaI CYCGRG 2 cut(s) 86, 649
BaeGI GKGCMC 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 561, 838
Bbv12I GWGCWC 1 cut(s) 490
BccI CCATC 2 cut(s) 198, 509
BceAI ACGGC 1 cut(s) 386
BfaI CTAG 1 cut(s) 587
BglII AGATCT 1 cut(s) 583
BmeT110I CYCGRG 2 cut(s) 86, 649
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 2 cut(s) 561, 838
Bpu14I TTCGAA 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 709
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse1I ACTGG 1 cut(s) 491
Bse8I GATNNNNATC 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 709
BseGI GGATG 4 cut(s) 258, 418, 520, 799
BseJI GATNNNNATC 1 cut(s) 582
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 490
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 86, 649
BsmI GAATGC 2 cut(s) 273, 792
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 2 cut(s) 86, 649
Bsp119I TTCGAA 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
BspACI CCGC 3 cut(s) 130, 479, 564
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 743
BspPI GGATC 2 cut(s) 181, 693
BspT104I TTCGAA 1 cut(s) 744
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
BssNAI GTATAC 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 709
Bst1107I GTATAC 1 cut(s) 637
Bst4CI ACNGT 3 cut(s) 62, 322, 485
BstBI TTCGAA 1 cut(s) 744
BstDEI CTNAG 3 cut(s) 730, 839, 853
BstF5I GGATG 4 cut(s) 258, 418, 520, 799
BstKTI GATC 8 cut(s) 126, 189, 205, 238, 291, 586, 688, 838
BstMBI GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 898
BstSLI GKGCMC 1 cut(s) 490
BstV2I GAAGAC 2 cut(s) 561, 838
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BstZ17I GTATAC 1 cut(s) 637
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 4 cut(s) 258, 418, 520, 799
CseI GACGC 1 cut(s) 765
Csp6I GTAC 3 cut(s) 98, 610, 671
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 3 cut(s) 127, 895, 918
CviJI RGCY 5 cut(s) 294, 648, 750, 796, 874
CviKI_1 RGCY 5 cut(s) 294, 648, 750, 796, 874
CviQI GTAC 3 cut(s) 98, 610, 671
DdeI CTNAG 3 cut(s) 730, 839, 853
DpnI GATC 8 cut(s) 125, 188, 204, 237, 290, 585, 687, 837
DpnII GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
DraI TTTAAA 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 709
Eco88I CYCGRG 2 cut(s) 86, 649
EcoT14I CCWWGG 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 3 cut(s) 130, 898, 921
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 3 cut(s) 126, 894, 917
FblI GTMKAC 1 cut(s) 636
FokI GGATG 4 cut(s) 245, 425, 527, 786
FspBI CTAG 1 cut(s) 587
HaeIII GGCC 1 cut(s) 294
HgaI GACGC 1 cut(s) 765
Hin1II CATG 3 cut(s) 130, 898, 921
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 2 cut(s) 116, 161
HphI GGTGA 5 cut(s) 236, 437, 509, 530, 587
Hpy166II GTNNAC 5 cut(s) 145, 488, 538, 610, 637
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 5 cut(s) 145, 488, 538, 610, 637
Hpy99I CGWCG 4 cut(s) 401, 473, 506, 551
HpyAV CCTTC 4 cut(s) 425, 566, 590, 740
HpyCH4III ACNGT 3 cut(s) 62, 322, 485
HpyCH4V TGCA 4 cut(s) 252, 488, 765, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 3 cut(s) 730, 839, 853
Hsp92II CATG 3 cut(s) 130, 898, 921
Kzo9I GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
LpnPI CCDG 3 cut(s) 114, 504, 870
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 587
MaeIII GTNAC 3 cut(s) 497, 590, 737
MalI GATC 8 cut(s) 125, 188, 204, 237, 290, 585, 687, 837
MboI GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
MboII GAAGA 7 cut(s) 17, 242, 563, 566, 708, 838, 901
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 8 cut(s) 19, 70, 195, 240, 310, 760, 829, 867
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 7 cut(s) 220, 377, 412, 505, 523, 553, 737
MseI TTAA 3 cut(s) 405, 455, 752
MslI CAYNNNNRTG 1 cut(s) 899
Mva1269I GAATGC 2 cut(s) 273, 792
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
NlaIII CATG 3 cut(s) 130, 898, 921
NmuCI GTSAC 2 cut(s) 497, 737
NspI RCATGY 1 cut(s) 898
NspV TTCGAA 1 cut(s) 744
PcsI WCGNNNNNNNCGW 2 cut(s) 546, 555
PctI GAATGC 2 cut(s) 273, 792
PfeI GAWTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 925
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 99, 611, 672
RsaNI GTAC 3 cut(s) 98, 610, 671
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 3 cut(s) 405, 455, 752
Sau3AI GATC 8 cut(s) 123, 186, 202, 235, 288, 583, 685, 835
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 490
SetI ASST 5 cut(s) 499, 577, 592, 715, 889
SfaNI GCATC 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 899
Sse9I AATT 8 cut(s) 19, 70, 195, 240, 310, 760, 829, 867
SsiI CCGC 3 cut(s) 130, 479, 564
SspI AATATT 1 cut(s) 693
SspMI CTAG 1 cut(s) 587
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 3 cut(s) 62, 322, 485
TaqI TCGA 2 cut(s) 205, 744
TasI AATT 8 cut(s) 19, 70, 195, 240, 310, 760, 829, 867
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 405, 455, 752
Tru9I TTAA 3 cut(s) 405, 455, 752
TseFI GTSAC 2 cut(s) 497, 737
Tsp45I GTSAC 2 cut(s) 497, 737
TspDTI ATGAA 9 cut(s) 24, 189, 337, 444, 462, 489, 842, 876, 901
TspGWI ACGGA 1 cut(s) 798
VneI GTGCAC 1 cut(s) 486
XapI RAATTY 3 cut(s) 19, 70, 195
XceI RCATGY 1 cut(s) 898
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.