Rroxscaffold_7G00205830

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000144
Physical Location & Seq
Forward (+)
55517872 .. 55523565
5694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205830.1

Sequence Viewer

Length: 1614 bp
ATGGTCATGCTCTCTCTATATTTGTCTTACACTAACCTGGGAAACTACCTCCGCTGGTTCACCAGGTCTGTTTCCTTCAAGAAATTACATGAACACAAAATATCTGCAGGCAAGAGAAAACAAATAGAGAACTGCGACGACGACCAAATTACTTGTCATGGGTCAGTTGGGTGCTGGCAGACACCACCACAAGACATCATGGAGGAGATTCTACGAAATATGGGTTTGATTGCTGGTATACCCTTAGCCAACGTCTGCATGTCTTGGAGTTCACTTGTTATGCGAGCTGAAATCCGCAGTGCTCCGCAACTTCCATGGTTAGTACACCCTCAAACTCCAAACACCAACTACTTAACCTTTTCCAGCCTCTCTGAGGGTGAAGTTATGAACTTGGAGCTCCCAAAGCGATTACGAGGAGAAGGCAAGCTCAAGTTTCGAGCGTCTTCTAAAGGTTGGTTGATCATTTTACAAGAAAAAGGATTCGGCTTTGATATGTTCCTATACAATCCGATTTCTAGAGCCCGACACCAACTTCCTTCCTTAAACACTATTCCATCTTTCCTATCTTTCCAACTGGCAAGAATGCTAGGGAAGGTTATCAACAATCATGCCGACAAACATGCCGAGAATTTTGTGTCTAAAGTTGTGTTGTCTAGTCCAAATATCTCAGAATGCATTGTGGCTGCAGTTTTCCAACCTCAGAAGGAATTGGGATTATGCAGACCTGGAGACAAAAGCTGGACTGTCTTTGAGATACTGAATCATGAGGACCACTTCCTCATGGATTTACTTTTTTCGCAGGGCATGCTATACGGCTTAGTTGATAATGTTGATAATAGCAAGTCCACCAATAAGAATGGCATCGGCGCAGCTCGCATCTTAAACTTTGGAGATGATCAGGCAATGACAGTGGAATTGAAGTTGGTCTACGGCCATAAAGAAGTTGGTAATACTACAGAATATCATGATGACTATCTAATCTTTTTAAATAGAGACTACAACTCATATTTGTTAGAATCAACAAAAAATAGCGACAAGGAAATCTTGTTGATCCATCAAATGCTCGATTGTTTAATGCCCAACTGTGCTGCTGCCGCTGCTGATGACGACGACGACGACGATGATGAGTCGGAAATCGAATACCAGAGGACAAGCGGGTTTGCAGTATACAAGATTGACCTCGAGTGTGGCAACTTTCATGAGGTCCAAAATTTGGGGGACCAAATAATATTTTTGGCAGAACATAGCTCTTCCTTGTCCTTTCCGGCAAGTGATTTCAAACTACAAGGAAATTGCATTTATTTTGCAACAAGCGGATACGCAACTATCAACCTAGCTCGTAAGAACCTTCTTGGATCAAATATCTCTCGTGAAATCGGAATCTTTAGTTTAGATGACGGAAAAATTAAGCGACCGTTTCCAAGTCTTGATGTTGCTGGCATTTCATCACCTAGTCAATTGAGTTGGTTTAGTCCAAATATCAAAGGGATAGAACGCGCCCCACCCATGAAGAAAAAAGGGAAAACTCGAAGTTGTTCGTTCTCTCCCGGCCGAACGCTACCCGGCGATCTCGCCGCTGCGTTCCTGCCGGGAGAGGATGTCGTTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

537

Amino Acids

60.07

Weight (kDa)

5.74

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 120 - 462 3.8e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1213
AccI GTMKAC 3 cut(s) 238, 927, 1167
AccII CGCG 1 cut(s) 1497
AciI CCGC 7 cut(s) 52, 295, 305, 1095, 1155, 1314, 1575
AclWI GGATC 2 cut(s) 1045, 1363
AcoI YGGCCR 2 cut(s) 931, 1549
AcsI RAATTY 2 cut(s) 628, 1210
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 373, 1213
AgsI TTSAA 3 cut(s) 79, 919, 1279
AjnI CCWGG 3 cut(s) 36, 62, 724
AluBI AGCT 7 cut(s) 287, 397, 427, 738, 872, 1248, 1337
AluI AGCT 7 cut(s) 287, 397, 427, 738, 872, 1248, 1337
Alw21I GWGCWC 2 cut(s) 304, 399
Alw26I GTCTC 2 cut(s) 723, 987
AlwI GGATC 2 cut(s) 1045, 1363
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 2 cut(s) 931, 1549
ApeKI GCWGC 6 cut(s) 683, 869, 1088, 1091, 1097, 1577
ApoI RAATTY 2 cut(s) 628, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp700I GAANNNNTTC 1 cut(s) 1534
AspLEI GCGC 2 cut(s) 869, 1499
AspS9I GGNCC 3 cut(s) 769, 1204, 1219
AsuC2I CCSGG 3 cut(s) 1548, 1563, 1590
AsuHPI GGTGA 3 cut(s) 52, 389, 1440
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 3 cut(s) 769, 1204, 1219
BanII GRGCYC 2 cut(s) 399, 523
BarI GAAGNNNNNNTAC 2 cut(s) 911, 943
BauI CACGAG 1 cut(s) 1368
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 304, 399
BbvI GCAGC 6 cut(s) 670, 881, 1075, 1078, 1084, 1564
BccI CCATC 2 cut(s) 562, 1062
BceAI ACGGC 2 cut(s) 829, 946
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 3 cut(s) 38, 64, 726
BciVI GTATCC 1 cut(s) 1310
BclI TGATCA 2 cut(s) 459, 895
BcnI CCSGG 3 cut(s) 1548, 1563, 1590
BcoDI GTCTC 2 cut(s) 723, 987
BfaI CTAG 5 cut(s) 516, 587, 654, 1334, 1452
BfmI CTRYAG 3 cut(s) 105, 684, 954
BfuI GTATCC 1 cut(s) 1310
BisI GCNGC 8 cut(s) 684, 870, 1089, 1092, 1095, 1098, 1575, 1578
BlsI GCNGC 8 cut(s) 685, 871, 1090, 1093, 1096, 1099, 1576, 1579
Bme1390I CCNGG 6 cut(s) 38, 64, 726, 1548, 1563, 1590
Bme18I GGWCC 3 cut(s) 769, 1204, 1219
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 3 cut(s) 769, 1204, 1219
BmiI GGNNCC 1 cut(s) 1220
BmrFI CCNGG 6 cut(s) 38, 64, 726, 1548, 1563, 1590
BmsI GCATC 2 cut(s) 870, 885
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 3 cut(s) 1548, 1563, 1590
BsaBI GATNNNNATC 1 cut(s) 972
BsaJI CCNNGG 2 cut(s) 37, 314
BsaXI ACNNNNNCTCC 2 cut(s) 1584, 1614
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 1213
Bse1I ACTGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 972
BseBI CCWGG 3 cut(s) 38, 64, 726
BseDI CCNNGG 2 cut(s) 37, 314
BseGI GGATG 1 cut(s) 1603
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 2 cut(s) 373, 1213
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 3 cut(s) 363, 681, 713
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 2 cut(s) 218, 429
BseX3I CGGCCG 1 cut(s) 1549
BseXI GCAGC 6 cut(s) 670, 881, 1075, 1078, 1084, 1564
Bsh1236I CGCG 1 cut(s) 1497
Bsh1285I CGRYCG 2 cut(s) 1415, 1552
BshFI GGCC 2 cut(s) 933, 1551
BsiEI CGRYCG 2 cut(s) 1415, 1552
BsiHKAI GWGCWC 2 cut(s) 304, 399
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 4 cut(s) 1265, 1548, 1563, 1589
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 2 cut(s) 373, 1213
BsmAI GTCTC 2 cut(s) 723, 987
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 2 cut(s) 588, 677
BsnI GGCC 2 cut(s) 933, 1551
BsoBI CYCGRG 1 cut(s) 1181
Bsp1286I GDGCHC 3 cut(s) 304, 399, 523
Bsp143I GATC 5 cut(s) 459, 895, 1050, 1355, 1567
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 7 cut(s) 52, 295, 305, 1095, 1155, 1314, 1575
BspANI GGCC 2 cut(s) 933, 1551
BspCNI CTCAG 3 cut(s) 364, 680, 712
BspFNI CGCG 1 cut(s) 1497
BspHI TCATGA 3 cut(s) 763, 964, 1198
BspLI GGNNCC 1 cut(s) 1220
BspMAI CTGCAG 2 cut(s) 109, 688
BspPI GGATC 2 cut(s) 1045, 1363
BspQI GCTCTTC 1 cut(s) 1255
BsrDI GCAATG 1 cut(s) 909
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 37, 314
BssMI GATC 5 cut(s) 459, 895, 1050, 1355, 1567
BssNAI GTATAC 2 cut(s) 239, 1168
BssSI CACGAG 1 cut(s) 1368
BssT1I CCWWGG 1 cut(s) 314
Bst1107I GTATAC 2 cut(s) 239, 1168
Bst2BI CACGAG 1 cut(s) 1368
Bst2UI CCWGG 3 cut(s) 38, 64, 726
Bst4CI ACNGT 4 cut(s) 745, 910, 1085, 1416
Bst6I CTCTTC 1 cut(s) 1255
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 7 cut(s) 109, 176, 285, 425, 806, 874, 1438
BstDEI CTNAG 5 cut(s) 244, 372, 667, 699, 817
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 1603
BstFNI CGCG 1 cut(s) 1497
BstHHI GCGC 2 cut(s) 869, 1499
BstKTI GATC 5 cut(s) 462, 898, 1053, 1358, 1570
BstMAI GTCTC 2 cut(s) 723, 987
BstMBI GATC 5 cut(s) 459, 895, 1050, 1355, 1567
BstMCI CGRYCG 2 cut(s) 1415, 1552
BstMWI GCNNNNNNNGC 5 cut(s) 403, 805, 873, 1094, 1097
BstNI CCWGG 3 cut(s) 38, 64, 726
BstNSI RCATGY 3 cut(s) 262, 623, 808
BstSCI CCNGG 6 cut(s) 36, 62, 724, 1546, 1561, 1588
BstSFI CTRYAG 3 cut(s) 105, 684, 954
BstUI CGCG 1 cut(s) 1497
BstV1I GCAGC 6 cut(s) 670, 881, 1075, 1078, 1084, 1564
BstV2I GAAGAC 1 cut(s) 435
BstZ17I GTATAC 2 cut(s) 239, 1168
BstZI CGGCCG 1 cut(s) 1549
BsuI GTATCC 1 cut(s) 1310
BsuRI GGCC 2 cut(s) 933, 1551
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 1603
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 915
Cac8I GCNNGC 7 cut(s) 109, 176, 285, 425, 806, 874, 1438
CciI TCATGA 3 cut(s) 763, 964, 1198
CfoI GCGC 2 cut(s) 869, 1499
Cfr13I GGNCC 3 cut(s) 769, 1204, 1219
CseI GACGC 1 cut(s) 429
CsiI ACCWGGT 1 cut(s) 62
Csp6I GTAC 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 5 cut(s) 244, 372, 667, 699, 817
DpnI GATC 5 cut(s) 461, 897, 1052, 1357, 1569
DpnII GATC 5 cut(s) 459, 895, 1050, 1355, 1567
DraI TTTAAA 1 cut(s) 987
EaeI YGGCCR 2 cut(s) 931, 1549
EagI CGGCCG 1 cut(s) 1549
Eam1104I CTCTTC 1 cut(s) 1255
EarI CTCTTC 1 cut(s) 1255
Ecl136II GAGCTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 1549
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 399, 523
Eco47I GGWCC 3 cut(s) 769, 1204, 1219
Eco52I CGGCCG 1 cut(s) 1549
Eco53kI GAGCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 36, 62, 724
EcoT14I CCWWGG 1 cut(s) 314
EcoT22I ATGCAT 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 399, 523
ErhI CCWWGG 1 cut(s) 314
FalI AAGNNNNNCTT 2 cut(s) 1028, 1060
FaqI GGGAC 1 cut(s) 1232
FauI CCCGC 1 cut(s) 1148
FbaI TGATCA 2 cut(s) 459, 895
FblI GTMKAC 3 cut(s) 238, 927, 1167
Fnu4HI GCNGC 8 cut(s) 684, 870, 1089, 1092, 1095, 1098, 1575, 1578
FokI GGATG 1 cut(s) 1610
FriOI GRGCYC 2 cut(s) 399, 523
Fsp4HI GCNGC 8 cut(s) 684, 870, 1089, 1092, 1095, 1098, 1575, 1578
FspBI CTAG 5 cut(s) 516, 587, 654, 1334, 1452
GlaI GCGC 2 cut(s) 868, 1498
GluI GCNGC 8 cut(s) 684, 870, 1089, 1092, 1095, 1098, 1575, 1578
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 2 cut(s) 933, 1551
HapII CCGG 4 cut(s) 1265, 1548, 1563, 1589
HgaI GACGC 1 cut(s) 429
HhaI GCGC 2 cut(s) 869, 1499
Hin6I GCGC 2 cut(s) 867, 1497
HinP1I GCGC 2 cut(s) 867, 1497
HinfI GANTC 6 cut(s) 208, 480, 760, 1016, 1127, 1380
HpaII CCGG 4 cut(s) 1265, 1548, 1563, 1589
HphI GGTGA 3 cut(s) 52, 389, 1440
Hpy166II GTNNAC 7 cut(s) 60, 239, 272, 325, 846, 928, 1168
Hpy188I TCNGA 6 cut(s) 373, 510, 670, 702, 1132, 1379
Hpy188III TCNNGA 7 cut(s) 79, 516, 764, 965, 1199, 1370, 1427
Hpy8I GTNNAC 7 cut(s) 60, 239, 272, 325, 846, 928, 1168
Hpy99I CGWCG 6 cut(s) 140, 143, 1112, 1115, 1118, 1121
HpyAV CCTTC 6 cut(s) 85, 413, 546, 586, 697, 1358
HpyCH4III ACNGT 4 cut(s) 745, 910, 1085, 1416
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 8 cut(s) 107, 258, 675, 686, 720, 1163, 1296, 1307
HpyF10VI GCNNNNNNNGC 5 cut(s) 403, 805, 873, 1094, 1097
HpyF3I CTNAG 5 cut(s) 244, 372, 667, 699, 817
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 2 cut(s) 867, 1497
Ksp22I TGATCA 2 cut(s) 459, 895
Kzo9I GATC 5 cut(s) 459, 895, 1050, 1355, 1567
LguI GCTCTTC 1 cut(s) 1255
LmnI GCTCC 3 cut(s) 307, 394, 402
Lsp1109I GCAGC 6 cut(s) 670, 881, 1075, 1078, 1084, 1564
LweI GCATC 2 cut(s) 870, 885
MabI ACCWGGT 1 cut(s) 62
MaeI CTAG 5 cut(s) 516, 587, 654, 1334, 1452
MaeII ACGT 1 cut(s) 252
MalI GATC 5 cut(s) 461, 897, 1052, 1357, 1569
MboI GATC 5 cut(s) 459, 895, 1050, 1355, 1567
MboII GAAGA 3 cut(s) 435, 1242, 1522
MfeI CAATTG 1 cut(s) 1457
MhlI GDGCHC 3 cut(s) 304, 399, 523
MluCI AATT 9 cut(s) 83, 147, 628, 707, 914, 1210, 1291, 1404, 1457
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 3 cut(s) 595, 718, 1110
Mph1103I ATGCAT 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 1534
MseI TTAA 6 cut(s) 353, 542, 881, 986, 1073, 1407
MspA1I CMGCKG 3 cut(s) 54, 1097, 1577
MspI CCGG 4 cut(s) 1265, 1548, 1563, 1589
MspR9I CCNGG 6 cut(s) 38, 64, 726, 1548, 1563, 1590
MunI CAATTG 1 cut(s) 1457
Mva1269I GAATGC 2 cut(s) 588, 677
MvaI CCWGG 3 cut(s) 38, 64, 726
MvnI CGCG 1 cut(s) 1497
MwoI GCNNNNNNNGC 5 cut(s) 403, 805, 873, 1094, 1097
NciI CCSGG 3 cut(s) 1548, 1563, 1590
NcoI CCATGG 1 cut(s) 314
NdeII GATC 5 cut(s) 459, 895, 1050, 1355, 1567
NlaIV GGNNCC 1 cut(s) 1220
NmeAIII GCCGAG 1 cut(s) 649
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 3 cut(s) 262, 623, 808
PaeI GCATGC 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 1181
PagI TCATGA 3 cut(s) 763, 964, 1198
PciSI GCTCTTC 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 2 cut(s) 1113, 1116
PctI GAATGC 2 cut(s) 588, 677
PdmI GAANNNNTTC 1 cut(s) 1534
PfeI GAWTC 5 cut(s) 208, 480, 760, 1016, 1380
PflMI CCANNNNNTGG 1 cut(s) 1213
PkrI GCNGC 8 cut(s) 685, 871, 1090, 1093, 1096, 1099, 1576, 1579
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 3 cut(s) 36, 62, 724
PspGI CCWGG 3 cut(s) 36, 62, 724
PspN4I GGNNCC 1 cut(s) 1220
PspPI GGNCC 3 cut(s) 769, 1204, 1219
PspXI VCTCGAGB 1 cut(s) 1181
PstI CTGCAG 2 cut(s) 109, 688
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 1255
SaqAI TTAA 6 cut(s) 353, 542, 881, 986, 1073, 1407
SatI GCNGC 8 cut(s) 684, 870, 1089, 1092, 1095, 1098, 1575, 1578
Sau3AI GATC 5 cut(s) 459, 895, 1050, 1355, 1567
Sau96I GGNCC 3 cut(s) 769, 1204, 1219
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 6 cut(s) 38, 64, 726, 1548, 1563, 1590
SduI GDGCHC 3 cut(s) 304, 399, 523
SexAI ACCWGGT 1 cut(s) 62
SfaNI GCATC 2 cut(s) 870, 885
SfcI CTRYAG 3 cut(s) 105, 684, 954
Sfr274I CTCGAG 1 cut(s) 1181
SinI GGWCC 3 cut(s) 769, 1204, 1219
SlaI CTCGAG 1 cut(s) 1181
SmlI CTYRAG 2 cut(s) 428, 1181
SmoI CTYRAG 2 cut(s) 428, 1181
SphI GCATGC 1 cut(s) 808
Sse9I AATT 9 cut(s) 83, 147, 628, 707, 914, 1210, 1291, 1404, 1457
SsiI CCGC 7 cut(s) 52, 295, 305, 1095, 1155, 1314, 1575
SspI AATATT 1 cut(s) 1230
SspMI CTAG 5 cut(s) 516, 587, 654, 1334, 1452
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 6 cut(s) 36, 62, 724, 1546, 1561, 1588
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 4 cut(s) 745, 910, 1085, 1416
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 436, 1065, 1137, 1182, 1528
TasI AATT 9 cut(s) 83, 147, 628, 707, 914, 1210, 1291, 1404, 1457
TatI WGTACW 1 cut(s) 322
TauI GCSGC 2 cut(s) 1097, 1577
TfiI GAWTC 5 cut(s) 208, 480, 760, 1016, 1380
Tru1I TTAA 6 cut(s) 353, 542, 881, 986, 1073, 1407
Tru9I TTAA 6 cut(s) 353, 542, 881, 986, 1073, 1407
TscAI CASTG 2 cut(s) 304, 915
TseI GCWGC 6 cut(s) 683, 869, 1088, 1091, 1097, 1577
TspDTI ATGAA 5 cut(s) 105, 401, 1187, 1434, 1523
TspGWI ACGGA 1 cut(s) 1413
TspRI CASTG 2 cut(s) 304, 915
Van91I CCANNNNNTGG 1 cut(s) 1213
VpaK11BI GGWCC 3 cut(s) 769, 1204, 1219
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 2 cut(s) 628, 1210
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 3 cut(s) 262, 623, 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 941
XhoI CTCGAG 1 cut(s) 1181
XmiI GTMKAC 3 cut(s) 238, 927, 1167
XmnI GAANNNNTTC 1 cut(s) 1534
XspI CTAG 5 cut(s) 516, 587, 654, 1334, 1452
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.