Rh6DG059700

Protein of unknown function (DUF295)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
6113604 .. 6114308
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG059700.1

Sequence Viewer

Length: 513 bp
ATGAACTCGCATGGTTACTGCTGCCTCAAGCCCCCAAACAAGTGCTTGAGCTTTGCCAGCCTCACTGAGAAGAGAGAAGTACTCAAGTTAAAGCTTCCTAAGGAAGTTCGAGGAAGCTGGATTTATGGGTCTTCTAAAGGTTGGTTGATCATGGTCAAGGAAAAAGGATTACAGTCTACGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACAAAAACTTCCGCCGTTGAGGACAATTCCATCTTTCAAAAAGATTGTAAAAACGAGGCAATGGAAACGTTTTGGTGCCAATATTTTCCTCTTGTATGTTGCATTACTTACCTCTCATGATCTTAATTCTTCAGGCCATTTTACGGTAGCCATAATTTTTGAGGATTTTAAGGGCCAGAAGACATTGGGTTTATGCAAACTTGAAGACCTAACATGGAGTGTCTTCCGGGTATTCGACAACAACGACCGCATTGAGCTTTCACCTGTTTTCTCGAGGCATTCTGTATGCTTTAGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.41

Weight (kDa)

9.8

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 19 - 147 3.7e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 2 cut(s) 176, 187
AciI CCGC 2 cut(s) 224, 460
AclI AACGTT 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 203, 355
AgsI TTSAA 2 cut(s) 250, 416
AluBI AGCT 4 cut(s) 51, 94, 117, 469
AluI AGCT 4 cut(s) 51, 94, 117, 469
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 2 cut(s) 346, 385
ApeKI GCWGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 484
AxyI CCTNAGG 1 cut(s) 99
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 4 cut(s) 123, 398, 423, 427
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 211
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 440
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 208, 289
BmrFI CCNGG 1 cut(s) 440
BpiI GAAGAC 4 cut(s) 123, 398, 423, 427
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpuEI CTTGAG 3 cut(s) 11, 67, 68
BpuMI CCSGG 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 355
Bse21I CCTNAGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 203, 355
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 348, 387
BshNI GGYRCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 203, 355
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 2 cut(s) 348, 387
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 147, 331
BspACI CCGC 2 cut(s) 224, 460
BspANI GGCC 2 cut(s) 348, 387
BspCNI CTCAG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 208, 289
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 278
BssMI GATC 2 cut(s) 147, 331
Bst4CI ACNGT 2 cut(s) 174, 358
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 66, 99
BstKTI GATC 2 cut(s) 150, 334
BstMBI GATC 2 cut(s) 147, 331
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 4 cut(s) 123, 398, 423, 427
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 348, 387
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 80
CviAII CATG 4 cut(s) 11, 151, 329, 426
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 66, 99
DpnI GATC 2 cut(s) 149, 333
DpnII GATC 2 cut(s) 147, 331
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 4 cut(s) 14, 154, 332, 429
FaiI YATR 9 cut(s) 12, 126, 152, 309, 330, 365, 406, 427, 499
FatI CATG 4 cut(s) 10, 150, 328, 425
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 2 cut(s) 176, 187
Fnu4HI GCNGC 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 348, 387
HapII CCGG 1 cut(s) 439
Hin1II CATG 4 cut(s) 14, 154, 332, 429
HindIII AAGCTT 1 cut(s) 92
HpaII CCGG 1 cut(s) 439
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 177, 188
Hpy188III TCNNGA 3 cut(s) 204, 329, 484
Hpy8I GTNNAC 2 cut(s) 177, 188
HpyCH4III ACNGT 2 cut(s) 174, 358
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 314, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 66, 99
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 4 cut(s) 14, 154, 332, 429
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 2 cut(s) 147, 331
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 70, 103, 189, 330, 401, 452, 489
Lsp1109I GCAGC 1 cut(s) 8
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 149, 333
MboI GATC 2 cut(s) 147, 331
MboII GAAGA 6 cut(s) 82, 123, 333, 403, 427, 428
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 4 cut(s) 198, 237, 337, 366
MnlI CCTC 9 cut(s) 35, 71, 104, 225, 261, 311, 334, 367, 480
MseI TTAA 4 cut(s) 89, 192, 336, 381
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 440
Mva1269I GAATGC 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 440
NdeII GATC 2 cut(s) 147, 331
NlaIII CATG 4 cut(s) 14, 154, 332, 429
NlaIV GGNNCC 2 cut(s) 208, 289
PaeR7I CTCGAG 1 cut(s) 484
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PctI GAATGC 1 cut(s) 490
PkrI GCNGC 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 208, 289
PspPI GGNCC 1 cut(s) 385
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 89, 192, 336, 381
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 147, 331
Sau96I GGNCC 1 cut(s) 385
ScaI AGTACT 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 53, 96, 119, 142, 283, 326, 423, 471, 478
Sfr274I CTCGAG 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 484
SmlI CTYRAG 4 cut(s) 26, 46, 83, 484
SmoI CTYRAG 4 cut(s) 26, 46, 83, 484
Sse9I AATT 4 cut(s) 198, 237, 337, 366
SsiI CCGC 2 cut(s) 224, 460
SspI AATATT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 174, 358
TaiI ACGT 1 cut(s) 283
TaqI TCGA 4 cut(s) 109, 447, 485, 508
TasI AATT 4 cut(s) 198, 237, 337, 366
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 4 cut(s) 89, 192, 336, 381
Tru9I TTAA 4 cut(s) 89, 192, 336, 381
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 70
XhoI CTCGAG 1 cut(s) 484
XmiI GTMKAC 2 cut(s) 176, 187
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.