Rh6DG053700

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000144
Physical Location & Seq
Reverse (-)
5584351 .. 5592382
8032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG053700.1

Sequence Viewer

Length: 663 bp
ATGTTGCGGCAAAGGAAGAATATGCTGCAGAAAAGGAAGAATATAGTGATGATTGAGAGAAAGGAAAAGCGAAATGTCGGTAGTGAGTGTAGCCCTTGGCACACACCACCAGAAGATATCATGGAGATGATTCTACTGTTTGTCGACTTTGCTGATCAAAGAAGGTTACGTCAGAGCTTTCTCACCTTCCCTGAGAACAAACTCTCCAAGGGCAAAGCTGTCAAGTTAAAGCTGCCTAAGCAACTTAAAGGCGGGTGGATATACGGATCTTCTAAAGGTGGTTTTAATTCTTCAAGCAACTTTACTGTAGCTGCATATTTCGAGGATCAGAAGACTTTAGGTTTGTGCAGACCAGGAGACCAAAAATGGAGTGTCTTCCCGGTATTAGATGGTAATCAAGATGACTGCCTCTGTGATATATTGTTTTCTTCTGGAAGGTTATATGCTTTAGTTGGGAGTAAAAAAATTGACGGCAGCGTCGCACCTACTCGCGCCTTAAACTTCGCATTTCAGGATGCTGAACACTTAAAGTTGACGTTGGTCTATGACAAGCATGAAGACCATAATGACAATATTCCTCCAGATCTTACAAATTACACGCCATGGTTGTTAGAATCAACCAACAAGGAAGTTCTGTTAATCCATCGATCAAATGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

220

Amino Acids

25.23

Weight (kDa)

9.1

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 97 - 216 4.5e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 492
AciI CCGC 2 cut(s) 7, 252
AclWI GGATC 2 cut(s) 274, 333
AgsI TTSAA 1 cut(s) 294
AjnI CCWGG 1 cut(s) 352
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 4 cut(s) 177, 218, 232, 311
AluI AGCT 4 cut(s) 177, 218, 232, 311
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 2 cut(s) 274, 333
ApeKI GCWGC 4 cut(s) 25, 232, 311, 474
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 175
BbsI GAAGAC 3 cut(s) 338, 367, 564
BbvI GCAGC 4 cut(s) 12, 219, 298, 486
BccI CCATC 2 cut(s) 383, 651
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 351
BfmI CTRYAG 2 cut(s) 26, 306
BglII AGATCT 1 cut(s) 583
BisI GCNGC 5 cut(s) 8, 26, 233, 312, 475
BlsI GCNGC 5 cut(s) 9, 27, 234, 313, 476
Bme1390I CCNGG 2 cut(s) 354, 380
BmrFI CCNGG 2 cut(s) 354, 380
BmsI GCATC 1 cut(s) 505
BoxI GACNNNNGTC 1 cut(s) 539
BpiI GAAGAC 3 cut(s) 338, 367, 564
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 95, 207, 602
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 3 cut(s) 95, 207, 602
BseGI GGATG 1 cut(s) 520
BseJI GATNNNNATC 1 cut(s) 393
BseMII CTCAG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 12, 219, 298, 486
BsgI GTGCAG 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 492
BshVI ATCGAT 1 cut(s) 646
BsiSI CCGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 154, 266, 325, 583, 647
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 2 cut(s) 7, 252
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 646
BspFNI CGCG 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 2 cut(s) 274, 333
BspTNI GGTCTC 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 95, 207, 602
BssMI GATC 5 cut(s) 154, 266, 325, 583, 647
BssT1I CCWWGG 3 cut(s) 95, 207, 602
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 138, 307
BstDEI CTNAG 2 cut(s) 192, 237
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 5 cut(s) 157, 269, 328, 586, 650
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 5 cut(s) 154, 266, 325, 583, 647
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 354
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 352, 378
BstSFI CTRYAG 2 cut(s) 26, 306
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 12, 219, 298, 486
BstV2I GAAGAC 3 cut(s) 338, 367, 564
BstX2I RGATCY 2 cut(s) 266, 583
BstYI RGATCY 2 cut(s) 266, 583
Bsu15I ATCGAT 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 646
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 1 cut(s) 520
CfoI GCGC 1 cut(s) 494
ClaI ATCGAT 1 cut(s) 646
CseI GACGC 1 cut(s) 466
CviAII CATG 4 cut(s) 121, 554, 603, 657
CviJI RGCY 5 cut(s) 93, 177, 218, 232, 311
CviKI_1 RGCY 5 cut(s) 93, 177, 218, 232, 311
DdeI CTNAG 2 cut(s) 192, 237
DpnI GATC 5 cut(s) 156, 268, 327, 585, 649
DpnII GATC 5 cut(s) 154, 266, 325, 583, 647
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eco130I CCWWGG 3 cut(s) 95, 207, 602
Eco31I GGTCTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 3 cut(s) 95, 207, 602
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 3 cut(s) 95, 207, 602
FaeI CATG 4 cut(s) 124, 557, 606, 660
FatI CATG 4 cut(s) 120, 553, 602, 656
FauI CCCGC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 5 cut(s) 8, 26, 233, 312, 475
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 5 cut(s) 8, 26, 233, 312, 475
GlaI GCGC 1 cut(s) 493
GluI GCNGC 5 cut(s) 8, 26, 233, 312, 475
GsuI CTGGAG 1 cut(s) 564
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 466
HhaI GCGC 1 cut(s) 494
Hin1II CATG 4 cut(s) 124, 557, 606, 660
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HincII GTYRAC 2 cut(s) 145, 534
HindII GTYRAC 2 cut(s) 145, 534
HinfI GANTC 2 cut(s) 130, 614
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 145, 534
Hpy188I TCNGA 2 cut(s) 174, 330
Hpy188III TCNNGA 4 cut(s) 398, 432, 512, 581
Hpy8I GTNNAC 2 cut(s) 145, 534
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 3 cut(s) 156, 196, 429
HpyCH4III ACNGT 2 cut(s) 138, 307
HpyCH4IV ACGT 2 cut(s) 169, 536
HpyCH4V TGCA 4 cut(s) 28, 314, 348, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 192, 237
HpySE526I ACGT 2 cut(s) 169, 536
Hsp92II CATG 4 cut(s) 124, 557, 606, 660
HspAI GCGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 5 cut(s) 154, 266, 325, 583, 647
LpnPI CCDG 8 cut(s) 123, 204, 339, 366, 393, 417, 497, 594
Lsp1109I GCAGC 4 cut(s) 12, 219, 298, 486
LweI GCATC 1 cut(s) 505
MaeII ACGT 2 cut(s) 169, 536
MaeIII GTNAC 1 cut(s) 165
MalI GATC 5 cut(s) 156, 268, 327, 585, 649
MboI GATC 5 cut(s) 154, 266, 325, 583, 647
MboII GAAGA 9 cut(s) 28, 49, 125, 261, 282, 343, 367, 420, 569
MflI RGATCY 2 cut(s) 266, 583
MluCI AATT 3 cut(s) 286, 465, 592
MnlI CCTC 3 cut(s) 316, 419, 588
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 6 cut(s) 227, 246, 285, 497, 527, 638
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 354, 380
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 602
NdeII GATC 5 cut(s) 154, 266, 325, 583, 647
NlaIII CATG 4 cut(s) 124, 557, 606, 660
NsiI ATGCAT 1 cut(s) 658
PfeI GAWTC 2 cut(s) 130, 614
PkrI GCNGC 5 cut(s) 9, 27, 234, 313, 476
PshAI GACNNNNGTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 2 cut(s) 266, 583
RseI CAYNNNNRTG 1 cut(s) 125
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 6 cut(s) 227, 246, 285, 497, 527, 638
SatI GCNGC 5 cut(s) 8, 26, 233, 312, 475
Sau3AI GATC 5 cut(s) 154, 266, 325, 583, 647
ScrFI CCNGG 2 cut(s) 354, 380
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 2 cut(s) 26, 306
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 3 cut(s) 286, 465, 592
SsiI CCGC 2 cut(s) 7, 252
SspI AATATT 1 cut(s) 574
StyD4I CCNGG 2 cut(s) 352, 378
StyI CCWWGG 3 cut(s) 95, 207, 602
TaaI ACNGT 2 cut(s) 138, 307
TaiI ACGT 2 cut(s) 172, 539
TaqI TCGA 3 cut(s) 144, 321, 646
TasI AATT 3 cut(s) 286, 465, 592
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 130, 614
Tru1I TTAA 6 cut(s) 227, 246, 285, 497, 527, 638
Tru9I TTAA 6 cut(s) 227, 246, 285, 497, 527, 638
TseI GCWGC 4 cut(s) 25, 232, 311, 474
TspDTI ATGAA 1 cut(s) 570
TspGWI ACGGA 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.