Rh6BG063100

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000144
Physical Location & Seq
Forward (+)
9862307 .. 9867256
4950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG063100.1

Sequence Viewer

Length: 903 bp
ATGGAGAACATTCTACAACGTGTCAATTTAGGAGATCGAATATGGTTAAGAAACTCTTGCAAGCATTGGAAGTCAATTGTTATGCGAAGAGACATCCCCGGGGCTTCGCATGAACTCCCATGGTTACTGCTGCCTCAAGCCCCCAAATGCAGCAACAAGTGCTTGAGCTTTGCCAGCCTCACTGAGAGGAAAGAAGTCAAGTTAAAGCTTCCTAAGGAAGTTCGAGGAAGCTGGATTTTTGGGTCTTCTAAAGGTTGGTTGATCATGGTCAAGGAAAAAGGATTACAGTCTACGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACACAAACTTCCGCCGTTGAGGACAATTCCATCTTTCAAAAAGATTGTAAAAATGAGGCAGTGGAAACGTTTTGGTGCCAACTCTTTCCTTTTTAATGTTTCATTACTTACTTCTCATGATCTTAATTCTTCAGGCCATTTTACGGTAGCCATAATCTTTGAGGATTTTAAGGACCAAAAGACATTAGGTTTATGCAAAATTGGAGACCTAACATGGAGTGTCTTCCAGGTATTTAATAACAACGACCGCCTTGAGCTTGTGGATATACTGTTTTCTCGAGGCATTCTGTATGCTTTAGTCAGTAGTCAAAAGGATGGCTTGGTAGCAGCTACTCGTGTTTTAAACTTTGCAGATCATGGAGTGAAGTTGAAATTGATTCACAACAAGCATGAACACAGGAATGTGATAATTGATGATTTTTATAGTGACTATCCGAGAGTTTCCAATGCAAACTATCGATCAATATTGCTAGAATCCACCAGCAATGAAGTCTTGGCCATTGGCAATCTCTCCAAGTCAAGACTGAAAGCAGGTCGATCGCCGTTTTACTTCTTTATAACGTTTCTAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

300

Amino Acids

34.35

Weight (kDa)

9.96

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 57 - 276 3.6e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000144)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03062 FvH4_2g03731 FvH4_2g04271 FvH4_2g04880 FvH4_2g04887 FvH4_2g06581 FvH4_2g16550 FvH4_2g16551 FvH4_2g16580 FvH4_4g01551 FvH4_4g01581 FvH4_4g01590 FvH4_4g01970 FvH4_4g02080 FvH4_4g02090 FvH4_4g02150 FvH4_5g18721 FvH4_5g33551 FvH4_5g33621 FvH4_7g08620
malus_domestica MD03G1012300.v1.1 MD05G1134000.v1.1 MD17G1018900.v1.1
prunus_persica Prupe.8G151600_v2.0.a1 Prupe.8G152400_v2.0.a1
pyrus_communis pycom03g01090 pycom17g01570
rosa_chinensis RchiOBHm_Chr4g0388141 RchiOBHm_Chr4g0388171 RchiOBHm_Chr4g0393001 RchiOBHm_Chr4g0393391 RchiOBHm_Chr4g0393471 RchiOBHm_Chr5g0063131 RchiOBHm_Chr6g0247891 RchiOBHm_Chr6g0254551 RchiOBHm_Chr6g0254611 RchiOBHm_Chr6g0254631 RchiOBHm_Chr6g0254681 RchiOBHm_Chr6g0280611
rosa_laevigata RLG00000001327 RLG00000001371 RLG00000003555 RLG00000003556 RLG00000009751 RLG00000009755 RLG00000010077 RLG00000012931 RLG00000013040 RLG00000013044 RLG00000013045 RLG00000014594 RLG00000014599 RLG00000014600 RLG00000014604 RLG00000014897 RLG00000014902 RLG00000014904 RLG00000014975 RLG00000014978 RLG00000014979 RLG00000015006 RLG00000023873 RLG00000035608
rosa_multiflora Rmu_co8471587.1_g000001 Rmu_sc0000976.1_g000004 Rmu_sc0001432.1_g000003 Rmu_sc0001432.1_g000004 Rmu_sc0001590.1_g000006 Rmu_sc0003093.1_g000008 Rmu_sc0005045.1_g000035 Rmu_sc0006323.1_g000014 Rmu_sc0007214.1_g000010 Rmu_sc0007839.1_g000011 Rmu_sc0008530.1_g000006 Rmu_sc0008789.1_g000010 Rmu_sc0009578.1_g000013 Rmu_sc0012965.1_g000003 Rmu_sc0036636.1_g000001
rosa_roxburghii Rroxscaffold_178G00437520 Rroxscaffold_178G00437560 Rroxscaffold_2G00106430 Rroxscaffold_5G00334690 Rroxscaffold_5G00338370 Rroxscaffold_5G00356450 Rroxscaffold_6G00388740 Rroxscaffold_6G00406660 Rroxscaffold_7G00187690 Rroxscaffold_7G00187810 Rroxscaffold_7G00187840 Rroxscaffold_7G00187880 Rroxscaffold_7G00205770 Rroxscaffold_7G00205790 Rroxscaffold_7G00205830 Rroxscaffold_7G00205840 Rroxscaffold_7G00205880 Rroxscaffold_7G00205920 Rroxscaffold_7G00205990 Rroxscaffold_7G00210640 Rroxscaffold_7G00210680 Rroxscaffold_7G00211580 Rroxscaffold_7G00211600
rosa_rugosa Rorug03G0315100 Rorug03G0315200 Rorug03G0315800 Rorug04G0001400 Rorug04G0001700 Rorug04G0003000 Rorug05G0354500 Rorug05G0546700 Rorug05G0546800 Rorug05G0546900 Rorug05G0553400 Rorug05G0553500 Rorug05G0553500 Rorug05G0553600 Rorug05G0553900 Rorug05G0554100 Rorug05G0554300 Rorug05G0582500 Rorug06G0132600 Rorug06G0132700 Rorug06G0132800 Rorug06G0133300 Rorug06G0133300 Rorug06G0185400 Rorug07G0074300 Rorug07G0074400 Rorug07G0275100
rosa_samantha Rh3AG195300 Rh3BG225400 Rh3BG225500 Rh3CG220300 Rh3DG220800 Rh3DG220900 Rh4AG020900 Rh4AG021400 Rh4AG047100 Rh4BG015300 Rh4BG041200 Rh4BG042800 Rh4BG043400 Rh4CG021500 Rh4CG021600 Rh4CG050100 Rh4CG050200 Rh5AG414800 Rh5CG453300 Rh6AG062600 Rh6AG070300 Rh6AG070500 Rh6AG070900 Rh6AG071200 Rh6AG099000 Rh6AG245300 Rh6AG245400 Rh6AG245800 Rh6BG055700 Rh6BG056000 Rh6BG062800 Rh6BG063100 Rh6BG063200 Rh6BG063300 Rh6BG247500 Rh6BG247600 Rh6BG247700 Rh6BG248200 Rh6BG249300 Rh6BG508200 Rh6DG034800 Rh6DG053300 Rh6DG053600 Rh6DG053700 Rh6DG059700 Rh6DG059800 Rh6DG082300 Rh6DG240400 Rh7AG202900 Rh7AG203000 Rh7AG407700 Rh7AG429300 Rh7BG202700 Rh7BG403000 Rh7CG213700 Rh7CG448100
rosa_wichuraiana Rw3G017790 Rw4G001400 Rw4G003730 Rw5G039000 Rw6G005550 Rw6G005570 Rw6G006160 Rw6G006180 Rw6G006200 Rw6G006220 Rw6G006250 Rw6G021280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 2 cut(s) 290, 301
AciI CCGC 2 cut(s) 338, 574
AclI AACGTT 2 cut(s) 394, 887
AcoI YGGCCR 1 cut(s) 822
AcuI CTGAAG 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 317, 469
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 364, 697
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 5 cut(s) 168, 208, 231, 583, 656
AluI AGCT 5 cut(s) 168, 208, 231, 583, 656
Alw26I GTCTC 2 cut(s) 84, 525
Ama87I CYCGRG 2 cut(s) 98, 603
AoxI GGCC 2 cut(s) 460, 822
ApeKI GCWGC 3 cut(s) 130, 150, 653
AspS9I GGNCC 1 cut(s) 499
AsuC2I CCSGG 2 cut(s) 99, 100
AvaI CYCGRG 2 cut(s) 98, 603
AvaII GGWCC 1 cut(s) 499
AxyI CCTNAGG 1 cut(s) 213
BalI TGGCCA 1 cut(s) 824
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 237, 541
BbvI GCAGC 3 cut(s) 117, 162, 665
BccI CCATC 2 cut(s) 364, 635
BceAI ACGGC 2 cut(s) 325, 853
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 2 cut(s) 99, 100
BcoDI GTCTC 2 cut(s) 84, 525
BfaI CTAG 1 cut(s) 797
BfuAI ACCTGC 1 cut(s) 848
BisI GCNGC 3 cut(s) 131, 151, 654
BlsI GCNGC 3 cut(s) 132, 152, 655
Bme1390I CCNGG 3 cut(s) 99, 100, 554
Bme18I GGWCC 1 cut(s) 499
BmeT110I CYCGRG 2 cut(s) 98, 603
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 2 cut(s) 322, 403
BmrFI CCNGG 3 cut(s) 99, 100, 554
BpiI GAAGAC 2 cut(s) 237, 541
BpuEI CTTGAG 3 cut(s) 120, 184, 599
BpuMI CCSGG 2 cut(s) 99, 100
Bsa29I ATCGAT 1 cut(s) 784
BsaI GGTCTC 1 cut(s) 525
BsaJI CCNNGG 4 cut(s) 97, 98, 99, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 469
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 817
BseBI CCWGG 1 cut(s) 554
BseCI ATCGAT 1 cut(s) 784
BseDI CCNNGG 4 cut(s) 97, 98, 99, 119
BseGI GGATG 2 cut(s) 93, 646
BseLI CCNNNNNNNGG 2 cut(s) 317, 469
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 117, 162, 665
Bsh1285I CGRYCG 2 cut(s) 574, 866
BshFI GGCC 2 cut(s) 462, 824
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 784
BsiEI CGRYCG 2 cut(s) 574, 866
BsiHKCI CYCGRG 2 cut(s) 98, 603
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 317, 469
BsmAI GTCTC 2 cut(s) 84, 525
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 2 cut(s) 462, 824
Bso31I GGTCTC 1 cut(s) 525
BsoBI CYCGRG 2 cut(s) 98, 603
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 6 cut(s) 34, 261, 445, 679, 785, 863
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 338, 574
BspANI GGCC 2 cut(s) 462, 824
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 784
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 322, 403
BspMI ACCTGC 1 cut(s) 848
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 817
BssECI CCNNGG 4 cut(s) 97, 98, 99, 119
BssMI GATC 6 cut(s) 34, 261, 445, 679, 785, 863
BssSI CACGAG 1 cut(s) 660
BssT1I CCWWGG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 288, 472, 597
Bst6I CTCTTC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 62, 175
BstDEI CTNAG 2 cut(s) 183, 213
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 93, 646
BstKTI GATC 6 cut(s) 37, 264, 448, 682, 788, 866
BstMAI GTCTC 2 cut(s) 84, 525
BstMBI GATC 6 cut(s) 34, 261, 445, 679, 785, 863
BstMCI CGRYCG 2 cut(s) 574, 866
BstMWI GCNNNNNNNGC 2 cut(s) 159, 174
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 97, 98, 552
BstV1I GCAGC 3 cut(s) 117, 162, 665
BstV2I GAAGAC 2 cut(s) 237, 541
Bsu15I ATCGAT 1 cut(s) 784
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 462, 824
BsuTUI ATCGAT 1 cut(s) 784
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 93, 646
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 2 cut(s) 180, 392
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 2 cut(s) 62, 175
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 499
Cfr9I CCCGGG 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 784
CviAII CATG 7 cut(s) 110, 120, 265, 443, 540, 683, 716
DdeI CTNAG 2 cut(s) 183, 213
DpnI GATC 6 cut(s) 36, 263, 447, 681, 787, 865
DpnII GATC 6 cut(s) 34, 261, 445, 679, 785, 863
DraI TTTAAA 1 cut(s) 669
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 441
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 98, 603
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 113, 123, 268, 446, 543, 686, 719
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 629, 661
FatI CATG 7 cut(s) 109, 119, 264, 442, 539, 682, 715
FbaI TGATCA 1 cut(s) 261
FblI GTMKAC 2 cut(s) 290, 301
Fnu4HI GCNGC 3 cut(s) 131, 151, 654
FokI GGATG 2 cut(s) 80, 653
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 131, 151, 654
FspBI CTAG 1 cut(s) 797
GluI GCNGC 3 cut(s) 131, 151, 654
HaeIII GGCC 2 cut(s) 462, 824
HapII CCGG 1 cut(s) 99
Hin1II CATG 7 cut(s) 113, 123, 268, 446, 543, 686, 719
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 703, 800
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 291, 302
Hpy188I TCNGA 1 cut(s) 762
Hpy188III TCNNGA 4 cut(s) 318, 443, 603, 846
Hpy8I GTNNAC 2 cut(s) 291, 302
HpyCH4III ACNGT 3 cut(s) 288, 472, 597
HpyCH4IV ACGT 3 cut(s) 19, 394, 887
HpyCH4V TGCA 5 cut(s) 60, 150, 522, 677, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 174
HpyF3I CTNAG 2 cut(s) 183, 213
HpySE526I ACGT 3 cut(s) 19, 394, 887
Hsp92II CATG 7 cut(s) 113, 123, 268, 446, 543, 686, 719
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 6 cut(s) 34, 261, 445, 679, 785, 863
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 3 cut(s) 117, 162, 665
MaeI CTAG 1 cut(s) 797
MaeII ACGT 3 cut(s) 19, 394, 887
MaeIII GTNAC 2 cut(s) 123, 752
MalI GATC 6 cut(s) 36, 263, 447, 681, 787, 865
MboI GATC 6 cut(s) 34, 261, 445, 679, 785, 863
MboII GAAGA 4 cut(s) 99, 237, 447, 541
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 8 cut(s) 25, 75, 312, 351, 451, 525, 698, 735
MluNI TGGCCA 1 cut(s) 824
MnlI CCTC 8 cut(s) 144, 180, 188, 218, 339, 375, 481, 599
Mox20I TGGCCA 1 cut(s) 824
MscI TGGCCA 1 cut(s) 824
MseI TTAA 8 cut(s) 47, 203, 306, 420, 450, 495, 561, 668
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 824
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 99, 100, 554
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 159, 174
NciI CCSGG 2 cut(s) 99, 100
NcoI CCATGG 1 cut(s) 119
NdeII GATC 6 cut(s) 34, 261, 445, 679, 785, 863
NlaIII CATG 7 cut(s) 113, 123, 268, 446, 543, 686, 719
NlaIV GGNNCC 2 cut(s) 322, 403
NmuCI GTSAC 1 cut(s) 752
PaeR7I CTCGAG 1 cut(s) 603
PagI TCATGA 1 cut(s) 442
PctI GAATGC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 703, 800
PkrI GCNGC 3 cut(s) 132, 152, 655
Ple19I CGATCG 1 cut(s) 866
PsiI TTATAA 1 cut(s) 884
Psp1406I AACGTT 2 cut(s) 394, 887
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 322, 403
PspPI GGNCC 1 cut(s) 499
PvuI CGATCG 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 8 cut(s) 47, 203, 306, 420, 450, 495, 561, 668
SatI GCNGC 3 cut(s) 131, 151, 654
Sau3AI GATC 6 cut(s) 34, 261, 445, 679, 785, 863
Sau96I GGNCC 1 cut(s) 499
ScrFI CCNGG 3 cut(s) 99, 100, 554
SduI GDGCHC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 499
SlaI CTCGAG 1 cut(s) 603
SmaI CCCGGG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 4 cut(s) 135, 163, 578, 603
SmoI CTYRAG 4 cut(s) 135, 163, 578, 603
Sse9I AATT 8 cut(s) 25, 75, 312, 351, 451, 525, 698, 735
SsiI CCGC 2 cut(s) 338, 574
SspI AATATT 1 cut(s) 792
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 3 cut(s) 97, 98, 552
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 3 cut(s) 288, 472, 597
TaiI ACGT 3 cut(s) 22, 397, 890
TaqI TCGA 5 cut(s) 37, 223, 604, 784, 862
TasI AATT 8 cut(s) 25, 75, 312, 351, 451, 525, 698, 735
TfiI GAWTC 2 cut(s) 703, 800
Tru1I TTAA 8 cut(s) 47, 203, 306, 420, 450, 495, 561, 668
Tru9I TTAA 8 cut(s) 47, 203, 306, 420, 450, 495, 561, 668
TscAI CASTG 2 cut(s) 187, 392
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 3 cut(s) 130, 150, 653
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 4 cut(s) 126, 417, 732, 828
TspMI CCCGGG 1 cut(s) 98
TspRI CASTG 2 cut(s) 187, 392
VpaK11BI GGWCC 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 98
XmiI GTMKAC 2 cut(s) 290, 301
XspI CTAG 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.