Rroxscaffold_7G00187850

EF-hand domain pair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015545
Physical Location & Seq
Forward (+)
27283466 .. 27286582
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187850.1

Sequence Viewer

Length: 387 bp
ATGGAGAACGCGACTCTTCTCAGAGAGTGGTTCGCGCGAGTTGACTCAGAGAAAACCGGAAGCATCACTGCCCCTCAGCTCAAGAATGCTCTCGCCGTTGGAAACCTCGAATTCCCTCTCTCAATTGTTCAGCAAATGATCAGCCTTTTTGCCAGGATGTATGATTTTGATAGAAATGGAACTATGAGCTTTGAAGAGTTTGTTGCCCTCAACAAGTTCCTACTAAAGGTTCAACAAGCTTTCTCAGAGCGAGAGAGGGGTCGGGGTTATCTTGTTCCTGATGATGTGTATGAGGCATTGGGGAAAATTGGTTTCTTCCTGACTCCCCTGCTTTCTACACAGTCTGCGAGAGCTTTGATCAAAAGAAGAATGGAATGTTCCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_7 EF-hand_8

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

6.33

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 7 - 70 2.6e-07 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015545)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16570
malus_domestica MD10G1139000.v1.1
prunus_persica Prupe.8G177800_v2.0.a1
pyrus_communis pycom10g11820
rosa_chinensis RchiOBHm_Chr6g0280641
rosa_laevigata RLG00000013041
rosa_multiflora Rmu_sc0000976.1_g000003
rosa_roxburghii Rroxscaffold_7G00187850
rosa_rugosa Rorug06G0133300 Rorug06G0133300 Rorug06G0133300
rosa_samantha Rh6AG245700 Rh6BG248100 Rh6CG249500 Rh6DG240800
rosa_wichuraiana Rw6G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 11, 35, 37
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 194, 233
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 79, 189, 239, 353
AluI AGCT 4 cut(s) 79, 189, 239, 353
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 2 cut(s) 138, 357
BfaI CTAG 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 4 cut(s) 34, 60, 89, 258
Bsh1236I CGCG 3 cut(s) 11, 35, 37
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 226
BsmI GAATGC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 138, 357
BspCNI CTCAG 4 cut(s) 33, 59, 88, 257
BspFNI CGCG 3 cut(s) 11, 35, 37
BssMI GATC 2 cut(s) 138, 357
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 2 cut(s) 21, 189
BstDEI CTNAG 4 cut(s) 20, 46, 75, 244
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 3 cut(s) 11, 35, 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 141, 360
BstMBI GATC 2 cut(s) 138, 357
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 3 cut(s) 11, 35, 37
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 37
CviJI RGCY 5 cut(s) 79, 144, 189, 239, 353
CviKI_1 RGCY 5 cut(s) 79, 144, 189, 239, 353
DdeI CTNAG 4 cut(s) 20, 46, 75, 244
DpnI GATC 2 cut(s) 140, 359
DpnII GATC 2 cut(s) 138, 357
Eam1104I CTCTTC 2 cut(s) 21, 189
EarI CTCTTC 2 cut(s) 21, 189
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 152
FaiI YATR 3 cut(s) 162, 185, 291
FbaI TGATCA 2 cut(s) 138, 357
FokI GGATG 1 cut(s) 169
FspBI CTAG 1 cut(s) 385
GlaI GCGC 1 cut(s) 36
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 37
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 3 cut(s) 13, 44, 322
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 4 cut(s) 23, 49, 247, 382
Hpy188III TCNNGA 3 cut(s) 82, 278, 319
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 342
HpyF3I CTNAG 4 cut(s) 20, 46, 75, 244
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 138, 357
Kzo9I GATC 2 cut(s) 138, 357
LpnPI CCDG 6 cut(s) 70, 139, 166, 291, 332, 341
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 385
MalI GATC 2 cut(s) 140, 359
MboI GATC 2 cut(s) 138, 357
MboII GAAGA 4 cut(s) 8, 206, 307, 378
MfeI CAATTG 1 cut(s) 123
MluCI AATT 3 cut(s) 110, 123, 306
MlyI GAGTC 3 cut(s) 7, 38, 316
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 84, 116, 126, 218, 249, 286
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 3 cut(s) 11, 35, 37
NdeII GATC 2 cut(s) 138, 357
PctI GAATGC 1 cut(s) 91
PleI GAGTC 3 cut(s) 7, 38, 316
PpsI GAGTC 3 cut(s) 7, 38, 316
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
Sau3AI GATC 2 cut(s) 138, 357
SchI GAGTC 3 cut(s) 7, 38, 316
ScrFI CCNGG 1 cut(s) 154
SetI ASST 6 cut(s) 81, 108, 191, 231, 241, 355
SfaNI GCATC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 110, 123, 306
SspMI CTAG 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 110, 123, 306
TscAI CASTG 1 cut(s) 73
TspRI CASTG 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 224
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.